BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0471.0018.p (234 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKS9.1 B3KKS9_9BACI PspA/IM30 family protein 387 e-106 B1DF44.1 B1DF44_9BACL Phage shock protein A, PspA 324 3e-87 C0Z624.1 C0Z624_BREBN Putative uncharacterized protein 171 4e-41 Q65F41.1 Q65F41_BACLD YvqH 136 1e-30 C1EW80.1 C1EW80_BACC3 Putative uncharacterized protein 132 2e-29 >B3KKS9.1 B3KKS9_9BACI PspA/IM30 family protein Length = 228 Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust. Identities = 188/227 (82%), Positives = 207/227 (91%) Query: 1 MGVFQRIKDMTKASVNDLLDKVEDPIVMLNQYLRDMEAEIHEAEVTVAKQMANERRMKQR 60 MGVF+RIKDMTKASVN+LLDKVEDPIVMLNQYLRDMEAEIHEAEVTVAKQMANERRMKQR Sbjct: 1 MGVFKRIKDMTKASVNELLDKVEDPIVMLNQYLRDMEAEIHEAEVTVAKQMANERRMKQR 60 Query: 61 VEEAAKVSGQRAAQAELALKNGQEEVTRKLLEEKIYFDQKHAEYSELHAQAEVQAKELVQ 120 V+EA K++ QR AQAELALKNGQEEV RKLLEEKIYFDQK EY ELH Q+E QAKELV Sbjct: 61 VDEAVKMAAQREAQAELALKNGQEEVARKLLEEKIYFDQKETEYVELHLQSEAQAKELVA 120 Query: 121 QLHDMKDEFYKLRNKRNELVSRAQMAKAKKQMSQISSVHAIESGSASLGFHRMEEKIMQL 180 QLH+MKDEFYK+RNKRNELV+RAQMAKAKKQMSQ+SS+H IESGSAS+GFHRMEEKIMQ+ Sbjct: 121 QLHEMKDEFYKMRNKRNELVARAQMAKAKKQMSQVSSLHTIESGSASMGFHRMEEKIMQM 180 Query: 181 EAEADVLRAPYSPSATAYSKPVDAEKQLKVEEQLAALKSKLNTTPSS 227 EAEADVLRAPY P+ AY+ PVDAEKQLKV+EQL ALK+K+ + S Sbjct: 181 EAEADVLRAPYRPNNAAYTSPVDAEKQLKVDEQLQALKNKMGKSSKS 227 >B1DF44.1 B1DF44_9BACL Phage shock protein A, PspA Length = 233 Score = 324 bits (831), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 162/229 (70%), Positives = 196/229 (85%), Gaps = 8/229 (3%) Query: 1 MGVFQRIKDMTKASVNDLLDKVEDPIVMLNQYLRDMEAEIHEAEVTVAKQMANERRMKQR 60 MG+F+R+KD+TKASVN++LDK+EDP+VMLNQYLRDME+EIH+AEVTVAKQMANERR+KQR Sbjct: 1 MGIFKRMKDLTKASVNEVLDKMEDPVVMLNQYLRDMESEIHQAEVTVAKQMANERRLKQR 60 Query: 61 VEEAAKVSGQRAAQAELALKNGQEEVTRKLLEEKIYFDQKHAEYSELHAQAEVQAKELVQ 120 ++EA + R ++AE AL+ GQEE RKLLEEK+YFDQK EYS+LHAQA+ QA+EL+Q Sbjct: 61 LDEAVRSIADRESKAEAALRAGQEEFARKLLEEKLYFDQKVNEYSDLHAQAKTQAEELMQ 120 Query: 121 QLHDMKDEFYKLRNKRNELVSRAQMAKAKKQMSQISSVHAIESGSASLGFHRMEEKIMQL 180 QLH MKDEFY+LRNKRNEL SRAQ+AKA+KQM+QISS H I+SG+AS GF+RMEEKIMQL Sbjct: 121 QLHGMKDEFYQLRNKRNELASRAQIAKAQKQMAQISSNHTIDSGTASRGFYRMEEKIMQL 180 Query: 181 EAEADVLRAPYSP-------SATAYSKPVDAEKQLKVEEQLAALKSKLN 222 EAEADVLR PYS +A ++S D EK+LKV+EQL ALKSKLN Sbjct: 181 EAEADVLRTPYSAAYSGTGNNAGSFS-SADMEKKLKVDEQLEALKSKLN 228 >C0Z624.1 C0Z624_BREBN Putative uncharacterized protein Length = 231 Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 92/227 (40%), Positives = 156/227 (68%), Gaps = 5/227 (2%) Query: 1 MGVFQRIKDMTKASVNDLLDKVEDPIVMLNQYLRDMEAEIHEAEVTVAKQMANERRMKQR 60 M +F+R++D+T ASVND LD +EDP+VMLNQY+RDME EI + EV VA+Q+A E++ +Q+ Sbjct: 1 MSIFKRLRDLTVASVNDALDSMEDPVVMLNQYMRDMEVEIGQVEVAVARQVALEKKFRQQ 60 Query: 61 VEEAAKVSGQRAAQAELALKNGQEEVTRKLLEEKIYFDQKHAEYSELHAQAEVQAKELVQ 120 ++EA + +R Q +LAL G++E+ R+ L +K ++ + AEY L+ A A ++ + Sbjct: 61 LDEANALIEKRDRQVKLALTEGEDELARRALADKKQYEGRAAEYETLYLSASESATQMRE 120 Query: 121 QLHDMKDEFYKLRNKRNELVSRAQMAKAKKQMSQISSVHAIESGSASLGFHRMEEKIMQL 180 +L ++K+EFYK+R K+ L++RAQ+A+ +KQ++Q +V I + SA GF RMEEK+M++ Sbjct: 121 KLAELKEEFYKMRAKKFTLMARAQVARTQKQVNQ--AVVGIGNQSAGRGFARMEEKVMRM 178 Query: 181 EAEADVLRAPYSPSATAYSKPVDAEKQLKVEEQLAALKSKLN--TTP 225 EAEA + + + A+ + ++ ++ +LA++K+ +N TP Sbjct: 179 EAEAQ-MSGQWRQTNRAWENALSELEKDDLDAELASIKASINEVKTP 224 >Q65F41.1 Q65F41_BACLD YvqH Length = 227 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/218 (39%), Positives = 138/218 (63%), Gaps = 7/218 (3%) Query: 4 FQRIKDMTKASVNDLLDKVEDPIVMLNQYLRDMEAEIHEAEVTVAKQMANERRMKQRVEE 63 +RI+DM ASVN+ LDK+E+P VMLNQY+RDME++I +A+ T+ KQ E K +VEE Sbjct: 3 LKRIRDMFVASVNEGLDKLENPRVMLNQYVRDMESDIAKAKHTIVKQQTIEHSFKGKVEE 62 Query: 64 AAKVSGQRAAQAELALKNGQEEVTRKLLEEKIYFDQKHAEYSELHAQAEVQAKELVQQLH 123 A K++ +R QA+LA G+EE+ +K L E YF++K AEY + H A+ Q EL +QL Sbjct: 63 AEKLAVKRRNQAQLAFDAGEEELAKKALSEMKYFEEKAAEYKDAHQHAKKQLAELKEQLE 122 Query: 124 DMKDEFYKLRNKRNELVSRAQMAKAKKQMSQISSVHAIESGSASLGFHRMEEKIMQLEAE 183 ++ + ++++++ L++RA KAK+ M+ +S + I+S SA F RME +I ++E Sbjct: 123 TLEVKLRDIKDRKHALIARANAVKAKEHMN--ASFNKIDSESAYREFMRMENRIEEMETR 180 Query: 184 ADVLRAPYSPSATAYSKPVD-AEKQLKVEEQLAALKSK 220 + Y+ + + S P E +VEE+L +++K Sbjct: 181 VN----SYAELSASSSSPFGRLEYAKEVEEELEKMRAK 214 >C1EW80.1 C1EW80_BACC3 Putative uncharacterized protein Length = 221 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/185 (41%), Positives = 120/185 (64%), Gaps = 2/185 (1%) Query: 1 MGVFQRIKDMTKASVNDLLDKVEDPIVMLNQYLRDMEAEIHEAEVTVAKQMANERRMKQR 60 M VF+R++D+T ++V L++K EDP+ M +QYLRDM+A++ EAE +VA Q+A E++ K Sbjct: 1 MSVFKRLRDLTMSNVYSLIEKAEDPVKMTDQYLRDMQADVQEAEKSVAAQIALEKKFKIL 60 Query: 61 VEEAAKVSGQRAAQAELALKNGQEEVTRKLLEEKIYFDQKHAEYSELHAQAEVQAKELVQ 120 EE + +R QA +A++ ++ R+ LEEK +QK EY + Q +V A L Sbjct: 61 FEEQEALVKKREEQAHMAVQASNLDLARRALEEKQNAEQKMKEYKASYEQNKVAADNLRL 120 Query: 121 QLHDMKDEFYKLRNKRNELVSRAQMAKAKKQMSQISSVHAIESGSASLGFHRMEEKIMQL 180 +L +M+ + +L+NKR LV+R AKA+K ++Q ++ +S SA G RMEEK +QL Sbjct: 121 KLEEMRKQLTELKNKRETLVARVNAAKAQKNINQ--AMSGFDSNSAKAGLSRMEEKALQL 178 Query: 181 EAEAD 185 EAEA+ Sbjct: 179 EAEAE 183 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.309 0.122 0.313 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,113,515,951 Number of extensions: 39592988 Number of successful extensions: 218451 Number of sequences better than 1.0e-05: 737 Number of HSP's gapped: 218657 Number of HSP's successfully gapped: 739 Length of query: 234 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 103 Effective length of database: 1,826,543,238 Effective search space: 188133953514 Effective search space used: 188133953514 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 129 (54.3 bits)