BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0471.0014.p (246 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q24YN9.1 Q24YN9_DESHY Putative uncharacterized protein 242 2e-62 B8FS42.1 B8FS42_DESHD Two component transcriptional regulator, w... 238 4e-61 C0EXI4.1 C0EXI4_9FIRM Putative uncharacterized protein 231 3e-59 A5Z5F8.1 A5Z5F8_9FIRM Putative uncharacterized protein 228 4e-58 B8I717.1 B8I717_CLOCE Two component transcriptional regulator, w... 209 1e-52 >Q24YN9.1 Q24YN9_DESHY Putative uncharacterized protein Length = 228 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 117/223 (52%), Positives = 154/223 (69%) Query: 19 MKTLLIVEDDRSLNKGIALTLAQNDLAIQQAYDITSAEQILSSNKXXXXXXXXHLPDGSG 78 + +LIVEDD +L++GI L N+ A Q ++T A Q + + +LPDG+G Sbjct: 4 INKILIVEDDLALSEGIVLAFKDNNFAFVQTRNLTEARQAVRNTSIQLVILDLNLPDGNG 63 Query: 79 LDYCEKIRRTSQVPIIFLTANDMEPDIVTGFELGGDDYITKPFSLMILRARVMAVLKRTA 138 L++ +++RRTS VP+I LTAND+E D+V G ELG DDYITKPFSLMILRARV A L+ Sbjct: 64 LEFLKELRRTSAVPVIILTANDLETDVVRGLELGADDYITKPFSLMILRARVNARLRNAH 123 Query: 139 SRGEDKITLGPLSFDFGKLEFYKNKEQLILSKTELKLLKILVTNPGTILTREQLIDRIWT 198 D + + F F K+EF KN L LSKTE KLL++L+ N G LTR QL+D IWT Sbjct: 124 PSAGDTVEMEGFCFSFAKMEFAKNGVPLELSKTEQKLLRLLLENRGQTLTRAQLVDAIWT 183 Query: 199 QEAEFVDENALTVAVKRLRTKIEDEPAAPKYIKTVYGLGYMWA 241 + AE+VDENAL+V V RLR K+ED P++P++IKTVYG+GY WA Sbjct: 184 EGAEYVDENALSVTVNRLRNKLEDRPSSPRFIKTVYGIGYTWA 226 >B8FS42.1 B8FS42_DESHD Two component transcriptional regulator, winged helix family Length = 228 Score = 238 bits (607), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 115/223 (51%), Positives = 154/223 (69%) Query: 19 MKTLLIVEDDRSLNKGIALTLAQNDLAIQQAYDITSAEQILSSNKXXXXXXXXHLPDGSG 78 + +LIVEDD +L++GI L N+ A Q ++T A Q + + +LPDG+G Sbjct: 4 INKILIVEDDLALSEGIVLAFKDNNFAFVQTRNLTEARQAVRNTSIQLVILDLNLPDGNG 63 Query: 79 LDYCEKIRRTSQVPIIFLTANDMEPDIVTGFELGGDDYITKPFSLMILRARVMAVLKRTA 138 L++ +++RRTS VP+I LTAND+E D+V G ELG DDYITKPFSLMILRARV A L+ Sbjct: 64 LEFLKELRRTSAVPVIILTANDLETDVVRGLELGADDYITKPFSLMILRARVNARLRNAH 123 Query: 139 SRGEDKITLGPLSFDFGKLEFYKNKEQLILSKTELKLLKILVTNPGTILTREQLIDRIWT 198 D + + F F K+EF K+ + LSKTE KLL++L+ N G LTR QL+D IWT Sbjct: 124 PSAGDTVEIEGFCFSFAKMEFAKDGVPIELSKTEQKLLRLLLENRGQTLTRAQLVDAIWT 183 Query: 199 QEAEFVDENALTVAVKRLRTKIEDEPAAPKYIKTVYGLGYMWA 241 + AE+VDENAL+V V RLR K+ED P++P++IKTVYG+GY WA Sbjct: 184 EGAEYVDENALSVTVNRLRNKLEDLPSSPRFIKTVYGIGYTWA 226 >C0EXI4.1 C0EXI4_9FIRM Putative uncharacterized protein Length = 227 Score = 231 bits (590), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 115/220 (52%), Positives = 146/220 (66%) Query: 22 LLIVEDDRSLNKGIALTLAQNDLAIQQAYDITSAEQILSSNKXXXXXXXXHLPDGSGLDY 81 LLIVEDD+ LN GI L L + Q + A +IL +LPDG+G+D+ Sbjct: 5 LLIVEDDKKLNDGIRLALKNDSYFFYQCQTLQKAREILKKEDITLVLLDVNLPDGNGIDF 64 Query: 82 CEKIRRTSQVPIIFLTANDMEPDIVTGFELGGDDYITKPFSLMILRARVMAVLKRTASRG 141 +IR+ SQVPII LT N+ME DIVTG E G +DYITKPFSLM+LRARV L+ + Sbjct: 65 VREIRKNSQVPIILLTVNNMEVDIVTGLEAGANDYITKPFSLMVLRARVSVQLRNKEAAA 124 Query: 142 EDKITLGPLSFDFGKLEFYKNKEQLILSKTELKLLKILVTNPGTILTREQLIDRIWTQEA 201 ++ + L F F K+EF+K+ E + LSKTE KLLK+L N G ++ RE LID +W E Sbjct: 125 KNSMELDGFEFYFDKMEFFKDGEPIELSKTEQKLLKVLCENRGKVVKREYLIDEVWQGET 184 Query: 202 EFVDENALTVAVKRLRTKIEDEPAAPKYIKTVYGLGYMWA 241 EFVD +ALTVAVKRLR K+ED+ P+YIKTVYG+GY WA Sbjct: 185 EFVDAHALTVAVKRLRDKLEDDTQKPEYIKTVYGIGYTWA 224 >A5Z5F8.1 A5Z5F8_9FIRM Putative uncharacterized protein Length = 227 Score = 228 bits (581), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 113/220 (51%), Positives = 146/220 (66%) Query: 22 LLIVEDDRSLNKGIALTLAQNDLAIQQAYDITSAEQILSSNKXXXXXXXXHLPDGSGLDY 81 LLIVEDD+ LN GI L L + Q + A IL+ +LPDG+G+D+ Sbjct: 5 LLIVEDDKKLNDGIRLALKNDAYFFYQCRTLQEARAILNREDITLVLLDVNLPDGNGIDF 64 Query: 82 CEKIRRTSQVPIIFLTANDMEPDIVTGFELGGDDYITKPFSLMILRARVMAVLKRTASRG 141 +IR+ SQVPII LT N+ME DIVTG E G +DYITKPFSLM+LRARV L+ + Sbjct: 65 VREIRKNSQVPIILLTVNNMEVDIVTGLEAGANDYITKPFSLMVLRARVSVQLRNKEAAA 124 Query: 142 EDKITLGPLSFDFGKLEFYKNKEQLILSKTELKLLKILVTNPGTILTREQLIDRIWTQEA 201 ++ + L F F K+EF+K+ E + LSKTE KLL++L N G +L RE LID +W + Sbjct: 125 KNSMELDGFEFYFDKMEFFKDGEPIELSKTEQKLLRVLCENRGKVLKREYLIDEVWQGDT 184 Query: 202 EFVDENALTVAVKRLRTKIEDEPAAPKYIKTVYGLGYMWA 241 EFVD +ALTVA+KRLR K+ED+ P+YIKTVYG+GY WA Sbjct: 185 EFVDAHALTVAIKRLRDKLEDDTQKPEYIKTVYGIGYTWA 224 >B8I717.1 B8I717_CLOCE Two component transcriptional regulator, winged helix family Length = 228 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 103/224 (45%), Positives = 143/224 (63%) Query: 19 MKTLLIVEDDRSLNKGIALTLAQNDLAIQQAYDITSAEQILSSNKXXXXXXXXHLPDGSG 78 M +LIVEDD+ LN+GI++ L ++ + Y A + +N +LPD SG Sbjct: 1 MARILIVEDDKLLNEGISIVLKKHGHTVLSGYSYNEALCLFLNNNFELILLDINLPDRSG 60 Query: 79 LDYCEKIRRTSQVPIIFLTANDMEPDIVTGFELGGDDYITKPFSLMILRARVMAVLKRTA 138 L+ C +IR+ S VPIIF+TAND E DIV GF G DDYI KPFSL ++ R+ AVL+RT Sbjct: 61 LELCNEIRKKSDVPIIFITANDTEQDIVNGFVNGCDDYIAKPFSLEVMNRRIQAVLRRTG 120 Query: 139 SRGEDKITLGPLSFDFGKLEFYKNKEQLILSKTELKLLKILVTNPGTILTREQLIDRIWT 198 + + G +S ++ K+ K K L L+ TE KLL +L N G +LTR+ ++ R+W Sbjct: 121 TEDKSIFRSGEISINYEKMVVSKGKISLKLTATEYKLLTLLTQNSGQVLTRDIILQRLWG 180 Query: 199 QEAEFVDENALTVAVKRLRTKIEDEPAAPKYIKTVYGLGYMWAE 242 + FVDENA++V ++RLR KIED+P PKYIKTV+G+GY W E Sbjct: 181 TDEAFVDENAVSVNMRRLRQKIEDDPKNPKYIKTVFGIGYTWGE 224 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,306,972,199 Number of extensions: 47519253 Number of successful extensions: 173268 Number of sequences better than 1.0e-05: 18014 Number of HSP's gapped: 151281 Number of HSP's successfully gapped: 18029 Length of query: 246 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 114 Effective length of database: 1,817,122,223 Effective search space: 207151933422 Effective search space used: 207151933422 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)