BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0471.0013.p (344 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B7ANM7.1 B7ANM7_9BACE Sensor protein EC=2.7.13.3 248 7e-64 B0P859.1 B0P859_9FIRM Sensor protein EC=2.7.13.3 246 2e-63 B9E6C6.1 B9E6C6_CLOK1 Sensor protein EC=2.7.13.3 243 2e-62 A5N2Q0.1 A5N2Q0_CLOK5 Sensor protein EC=2.7.13.3 243 3e-62 C0FN90.1 C0FN90_9FIRM Sensor protein EC=2.7.13.3 241 6e-62 >B7ANM7.1 B7ANM7_9BACE Sensor protein EC=2.7.13.3 Length = 299 Score = 248 bits (632), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 136/300 (45%), Positives = 195/300 (65%), Gaps = 10/300 (3%) Query: 47 VLFVSCMLLLGGVRNWTLRRQITSFMDSVDEMVDRAIHGREKMTHFDETSLSSLEHKLWR 106 V+ + C L W RR+I M+ ++ M+D A+ G T+FDE+ LS+LE K Sbjct: 7 VIILLCFLAAIAAVLWE-RRKIRKTMEEIERMLDAAMTGSFSETNFDESQLSALETKFAH 65 Query: 107 YIEINKTNEQNLETEKNTIKELISDISHQTKTPLSSIMMYSQLLAETPELSGNTRLLLNE 166 Y+ + + QN+ EK+ IK LI+DISHQTKTP++++++YS+LL E + + + + Sbjct: 66 YLSAAEASSQNIAQEKDKIKTLIADISHQTKTPIANLLLYSELLMEET-MPASAKANVEA 124 Query: 167 IESQSEKLEWLITSLVKLSRLEAGMITL---QSTSGPVIETITRAVSHIYTRAEHKGIDL 223 + QSEKL +LI SLVKLSRLE G+I+L Q+ P++E++ V +A KG+ L Sbjct: 125 LYKQSEKLRFLIDSLVKLSRLENGIISLSPQQAALQPLLESV---VEQYTAKASEKGLSL 181 Query: 224 QIECDPLTRARHDHKWTSEALFNLLENAVKYTKAGGTIRISAESNEMFTRIDVSDTGIGI 283 Q++ D A D KWT+EAL N+++NA+KYT+ GTI ISA S EMF RID+SDTG+GI Sbjct: 182 QMQ-DTDAFAVFDFKWTAEALANIVDNAIKYTE-HGTITISAVSYEMFARIDISDTGLGI 239 Query: 284 QRDELEHIFKRFYRGCSARDYEGIGIGLYLTQKIISIQGGFITAASEAGKGTKLTVFLPQ 343 E IF RFYR S + EG+GIGLYL ++IIS +GG+I AS GKG+ ++FLP+ Sbjct: 240 PETEQAKIFARFYRSNSVQKQEGVGIGLYLARQIISGEGGYIKVASVPGKGSTFSIFLPK 299 >B0P859.1 B0P859_9FIRM Sensor protein EC=2.7.13.3 Length = 343 Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 131/317 (41%), Positives = 193/317 (60%), Gaps = 2/317 (0%) Query: 27 GYAGTAVFLEGGHPAFIEWTVLFVSCMLLLGGVRNWTLRRQITSFMDSVDEMVDRAIHG- 85 G AV+L + + LF +LL +RR++ F D+ +D + G Sbjct: 24 GAVCAAVYLLTQNITAVRCVFLFSLFVLLCVIFFVALIRRKLVRFSDAFCGQMDDMLSGD 83 Query: 86 -REKMTHFDETSLSSLEHKLWRYIEINKTNEQNLETEKNTIKELISDISHQTKTPLSSIM 144 + K T +E+ + ++L R E+ + N+ ++ E+ ++ELISDISHQ KTP++++ Sbjct: 84 IQPKQTVEEESLFYKINYRLGRLYEVMQENKNSIAKERADLQELISDISHQVKTPIANLK 143 Query: 145 MYSQLLAETPELSGNTRLLLNEIESQSEKLEWLITSLVKLSRLEAGMITLQSTSGPVIET 204 M + L E + L SQ +KL++L+ +++K SRLE G+I+L+ PV +T Sbjct: 144 MINNTLLENEVPPQKQKEFLTAQASQLDKLDFLMQAMIKTSRLETGVISLEQKQQPVYDT 203 Query: 205 ITRAVSHIYTRAEHKGIDLQIECDPLTRARHDHKWTSEALFNLLENAVKYTKAGGTIRIS 264 + A+ I AE K ID+Q+EC ARHD KWTSEALFN+L+NAVKYT AGG IR+S Sbjct: 204 LAAALGGILLNAEKKQIDVQVECPEHLDARHDRKWTSEALFNILDNAVKYTPAGGQIRVS 263 Query: 265 AESNEMFTRIDVSDTGIGIQRDELEHIFKRFYRGCSARDYEGIGIGLYLTQKIISIQGGF 324 E EM+ +ID++DTGIGI IFKRFYR + D +GIGIGLYL ++I+++QGG+ Sbjct: 264 VEGWEMYVKIDIADTGIGISEQHQGTIFKRFYREDAVHDVDGIGIGLYLAREIVTLQGGY 323 Query: 325 ITAASEAGKGTKLTVFL 341 I ASE GKG+ +VFL Sbjct: 324 IRVASEVGKGSTFSVFL 340 >B9E6C6.1 B9E6C6_CLOK1 Sensor protein EC=2.7.13.3 Length = 351 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 129/319 (40%), Positives = 196/319 (61%), Gaps = 12/319 (3%) Query: 31 TAVFLEGGHPAFIEW-----TVLFVSCMLLLGGVRNWTLRRQITSFMDSVDEMVDRAIHG 85 TAVF F W LF+ + L + +R+++ F DS+ + ++ ++G Sbjct: 33 TAVFF-----YFQNWITRAIAFLFIIAFVTLAFIFILLVRKKVVDFSDSISQCIEDIMNG 87 Query: 86 REKMT-HFDETSLSSLEH-KLWRYIEINKTNEQNLETEKNTIKELISDISHQTKTPLSSI 143 ++++ H + L + H KL R +I + N + EK I+E++SDISHQ KTP+S++ Sbjct: 88 KDEIAFHMESEDLIAKIHIKLRRLYKIMRENSSRNKNEKQAIQEMVSDISHQVKTPVSNL 147 Query: 144 MMYSQLLAETPELSGNTRLLLNEIESQSEKLEWLITSLVKLSRLEAGMITLQSTSGPVIE 203 MY+ L ++ + R L +E+Q KL++L+ SLVK+SRLE G ITL P+ + Sbjct: 148 KMYNSTLLQSQLPAEKQRKFLLVMETQINKLDFLMQSLVKMSRLETGAITLYIKCMPLYD 207 Query: 204 TITRAVSHIYTRAEHKGIDLQIECDPLTRARHDHKWTSEALFNLLENAVKYTKAGGTIRI 263 T+ A+S I AE K I++ ++C+P + HD KWT+EALFN+L+NAVKYT+ GG I + Sbjct: 208 TMALALSSIVLPAEKKNIEVTVKCNPHIKVFHDRKWTAEALFNILDNAVKYTEKGGKISV 267 Query: 264 SAESNEMFTRIDVSDTGIGIQRDELEHIFKRFYRGCSARDYEGIGIGLYLTQKIISIQGG 323 EM+T+ID+SDTG GI++ + HIFKRFYR G+GIGLYL+++IIS Q G Sbjct: 268 EVTQWEMYTKIDISDTGKGIEKQHITHIFKRFYREEEVHHIYGVGIGLYLSRQIISQQRG 327 Query: 324 FITAASEAGKGTKLTVFLP 342 +I S+ GKG+ +VFLP Sbjct: 328 YIKVNSDVGKGSTFSVFLP 346 >A5N2Q0.1 A5N2Q0_CLOK5 Sensor protein EC=2.7.13.3 Length = 346 Score = 243 bits (619), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 129/319 (40%), Positives = 196/319 (61%), Gaps = 12/319 (3%) Query: 31 TAVFLEGGHPAFIEW-----TVLFVSCMLLLGGVRNWTLRRQITSFMDSVDEMVDRAIHG 85 TAVF F W LF+ + L + +R+++ F DS+ + ++ ++G Sbjct: 28 TAVFF-----YFQNWITRAIAFLFIIAFVTLAFIFILLVRKKVVDFSDSISQCIEDIMNG 82 Query: 86 REKMT-HFDETSLSSLEH-KLWRYIEINKTNEQNLETEKNTIKELISDISHQTKTPLSSI 143 ++++ H + L + H KL R +I + N + EK I+E++SDISHQ KTP+S++ Sbjct: 83 KDEIAFHMESEDLIAKIHIKLRRLYKIMRENSSRNKNEKQAIQEMVSDISHQVKTPVSNL 142 Query: 144 MMYSQLLAETPELSGNTRLLLNEIESQSEKLEWLITSLVKLSRLEAGMITLQSTSGPVIE 203 MY+ L ++ + R L +E+Q KL++L+ SLVK+SRLE G ITL P+ + Sbjct: 143 KMYNSTLLQSQLPAEKQRKFLLVMETQINKLDFLMQSLVKMSRLETGAITLYIKCMPLYD 202 Query: 204 TITRAVSHIYTRAEHKGIDLQIECDPLTRARHDHKWTSEALFNLLENAVKYTKAGGTIRI 263 T+ A+S I AE K I++ ++C+P + HD KWT+EALFN+L+NAVKYT+ GG I + Sbjct: 203 TMALALSSIVLPAEKKNIEVTVKCNPHIKVFHDRKWTAEALFNILDNAVKYTEKGGKISV 262 Query: 264 SAESNEMFTRIDVSDTGIGIQRDELEHIFKRFYRGCSARDYEGIGIGLYLTQKIISIQGG 323 EM+T+ID+SDTG GI++ + HIFKRFYR G+GIGLYL+++IIS Q G Sbjct: 263 EVTQWEMYTKIDISDTGKGIEKQHITHIFKRFYREEEVHHIYGVGIGLYLSRQIISQQRG 322 Query: 324 FITAASEAGKGTKLTVFLP 342 +I S+ GKG+ +VFLP Sbjct: 323 YIKVNSDVGKGSTFSVFLP 341 >C0FN90.1 C0FN90_9FIRM Sensor protein EC=2.7.13.3 Length = 343 Score = 241 bits (616), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 125/302 (41%), Positives = 187/302 (61%), Gaps = 3/302 (0%) Query: 45 WTVLFVSCMLLLGGVRNWTL-RRQITSFMDSVDEMVDRAIHG--REKMTHFDETSLSSLE 101 W V+ +LL V L RR++ F DS ++D + G + K +E+ +E Sbjct: 41 WYVVLFGIFVLLCAVCFMVLVRRKLAMFSDSFCSLIDNMLSGNMQPKQIIEEESLFYKIE 100 Query: 102 HKLWRYIEINKTNEQNLETEKNTIKELISDISHQTKTPLSSIMMYSQLLAETPELSGNTR 161 ++L R E+ + N+ ++ E+ ++ELISDISHQ KTP++++ M + L E + Sbjct: 101 YRLNRLYEVMQENKNSIAQERADLQELISDISHQVKTPIANLKMINSTLLENEVPVQKQK 160 Query: 162 LLLNEIESQSEKLEWLITSLVKLSRLEAGMITLQSTSGPVIETITRAVSHIYTRAEHKGI 221 L SQ +KL++L+ ++K SRLEAG+I+L+ S P+ +T+ A+ I AE K I Sbjct: 161 EFLTAQASQLDKLDFLMQMMIKTSRLEAGVISLEKKSQPLYDTLAAALGGILLNAEKKQI 220 Query: 222 DLQIECDPLTRARHDHKWTSEALFNLLENAVKYTKAGGTIRISAESNEMFTRIDVSDTGI 281 ++Q++C HD KWT EALFN+L+NAVKYT GG IR+S ES EM+ +ID++DTGI Sbjct: 221 NVQVDCPENLVVSHDRKWTGEALFNILDNAVKYTPEGGQIRVSVESWEMYVKIDIADTGI 280 Query: 282 GIQRDELEHIFKRFYRGCSARDYEGIGIGLYLTQKIISIQGGFITAASEAGKGTKLTVFL 341 GI IFKRFYR D +GIGIGLYL ++I+++QGG+I SE G+G+ +VFL Sbjct: 281 GISEQHQGAIFKRFYREDIVHDVDGIGIGLYLAREIVTLQGGYIRVTSEVGRGSTFSVFL 340 Query: 342 PQ 343 P+ Sbjct: 341 PR 342 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.133 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,821,748,189 Number of extensions: 69385043 Number of successful extensions: 317346 Number of sequences better than 1.0e-05: 27843 Number of HSP's gapped: 268562 Number of HSP's successfully gapped: 27912 Length of query: 344 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 208 Effective length of database: 1,779,438,163 Effective search space: 370123137904 Effective search space used: 370123137904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)