BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0471.0007.p (150 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z7C2.1 C0Z7C2_BREBN Transcriptional regulator 177 3e-43 C1R0F5.1 C1R0F5_9ACTO Transcriptional regulator, AsnC family 74 5e-12 Q9RKY4.1 Q9RKY4_STRCO Putative AsnC-family transcriptional regul... 71 3e-11 B1W4B9.1 B1W4B9_STRGG Putative AsnC-family transcriptional regul... 71 3e-11 B5I397.1 B5I397_9ACTO AsnC-family transcriptional regulatory pro... 71 3e-11 >C0Z7C2.1 C0Z7C2_BREBN Transcriptional regulator Length = 150 Score = 177 bits (449), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 80/136 (58%), Positives = 103/136 (75%) Query: 15 NGRLPHEEIGRLLHISRPTVHQRVSKLEKNGVIKGYRGIVDWGKLDXXXXXXXXXXXXXX 74 NGR+ HEEI +LLHISRP VHQRV+KLEKNGVIKGYRGI+DW KL+ Sbjct: 15 NGRISHEEISKLLHISRPAVHQRVAKLEKNGVIKGYRGIIDWRKLEQRLKVLIFVKARCQ 74 Query: 75 XFRQAADQIIGIQIPGVSVLECQRMAGEWCMLLKVRVASPEQLTLLLDEILRIPDIKETS 134 F++ +I+ +Q+P V+++ECQR+AGEWCM+LKVR +PE +T L+DE+++ +I ETS Sbjct: 75 DFKEITAKIMNVQVPNVTIMECQRLAGEWCMMLKVRATAPEDITNLIDEMVQYDEILETS 134 Query: 135 TTFILSTIYEDGMKGI 150 TTFILSTIYEDG K I Sbjct: 135 TTFILSTIYEDGRKEI 150 >C1R0F5.1 C1R0F5_9ACTO Transcriptional regulator, AsnC family Length = 149 Score = 73.9 bits (180), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 74/136 (54%), Gaps = 6/136 (4%) Query: 15 NGRLPHEEIGRLLHISRPTVHQRVSKLEKNGVIKGYRGIVDWGKLDXXXXXXXXXXXXXX 74 +GR+ + ++G+L+ +S VHQRV KLE+ GV++G+R +VD L Sbjct: 15 DGRMSYTDLGKLIGLSTSAVHQRVQKLEERGVLRGFRAVVDPEAL----GLSLTAFISVK 70 Query: 75 XFRQAADQIIGIQIPGVSVLE-CQRMAGEWCMLLKVRVASPEQLTLLLDEILRIPDIKET 133 AA + ++ G+ +E C +AG+ +LKVRV +P QL LL I ++ T Sbjct: 71 PIDPAAPDDVPDRLKGLEEVEDCYSVAGDENYILKVRVGTPGQLESLLSRIRTAAEVS-T 129 Query: 134 STTFILSTIYEDGMKG 149 TT +LST +E M+G Sbjct: 130 RTTVVLSTPFEARMRG 145 >Q9RKY4.1 Q9RKY4_STRCO Putative AsnC-family transcriptional regulatory protein Length = 165 Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 6/131 (4%) Query: 15 NGRLPHEEIGRLLHISRPTVHQRVSKLEKNGVIKGYRGIVDWGKLDXXXXXXXXXXXXXX 74 +GR+ + ++G+ +S VHQRV +LE+ GVI+GY +VD + Sbjct: 34 DGRMSYTDLGKATGLSTSAVHQRVRRLEQRGVIRGYAAVVDPEAVG----LPMTAFISVK 89 Query: 75 XFRQAADQIIGIQIPGVSVLE-CQRMAGEWCMLLKVRVASPEQLTLLLDEILRIPDIKET 133 F +A I ++ GV +E C +AG+ +LKVRVA+P +L LL + + + T Sbjct: 90 PFDPSAPDDIADRLAGVPEIEACHSVAGDENYILKVRVATPHELEELLARVRSLAGVS-T 148 Query: 134 STTFILSTIYE 144 TT +LST YE Sbjct: 149 RTTVVLSTPYE 159 >B1W4B9.1 B1W4B9_STRGG Putative AsnC-family transcriptional regulator Length = 146 Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 70/131 (53%), Gaps = 6/131 (4%) Query: 15 NGRLPHEEIGRLLHISRPTVHQRVSKLEKNGVIKGYRGIVDWGKLDXXXXXXXXXXXXXX 74 +GR+ + ++G+ +S VHQRV +LE+ GVI+GY +VD + Sbjct: 15 DGRMSYTDLGKATGLSTSAVHQRVRRLEQRGVIRGYAAVVDPEAVG----LPITAFISVK 70 Query: 75 XFRQAADQIIGIQIPGVSVLE-CQRMAGEWCMLLKVRVASPEQLTLLLDEILRIPDIKET 133 F +A I ++ GV LE C +AG+ +LKVRVA+P +L LL I + + T Sbjct: 71 PFDPSAPDDIAERLAGVPELEACHSVAGDENYILKVRVATPLELEHLLTRIRTLAGVS-T 129 Query: 134 STTFILSTIYE 144 TT +LST YE Sbjct: 130 RTTVVLSTPYE 140 >B5I397.1 B5I397_9ACTO AsnC-family transcriptional regulatory protein Length = 165 Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 6/131 (4%) Query: 15 NGRLPHEEIGRLLHISRPTVHQRVSKLEKNGVIKGYRGIVDWGKLDXXXXXXXXXXXXXX 74 +GR+ + ++G+ +S VHQRV +LE+ GVI+GY +VD + Sbjct: 34 DGRMSYTDLGKATGLSTSAVHQRVRRLEQRGVIRGYAAVVDPEAVG----LPMTAFISVK 89 Query: 75 XFRQAADQIIGIQIPGVSVLE-CQRMAGEWCMLLKVRVASPEQLTLLLDEILRIPDIKET 133 F +A I ++ GV +E C +AG+ +LKVRVA+P +L LL + + + T Sbjct: 90 PFDPSAPDDIADRLAGVPEIEACHSVAGDENYILKVRVATPHELEELLARVRSLAGVS-T 148 Query: 134 STTFILSTIYE 144 TT +LST YE Sbjct: 149 RTTVVLSTPYE 159 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.141 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 684,580,531 Number of extensions: 21230378 Number of successful extensions: 64190 Number of sequences better than 1.0e-05: 148 Number of HSP's gapped: 64697 Number of HSP's successfully gapped: 148 Length of query: 150 Length of database: 3,060,696,203 Length adjustment: 112 Effective length of query: 38 Effective length of database: 2,005,542,523 Effective search space: 76210615874 Effective search space used: 76210615874 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)