BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0471.0005.p (164 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B2A733.1 B2A733_NATTJ YuaC 134 3e-30 A4J9F9.1 A4J9F9_DESRM Transcriptional regulator 130 4e-29 Q2FDP7.1 Q2FDP7_STAA3 Putative uncharacterized protein 108 1e-22 A8Z5A7.1 A8Z5A7_STAAT Possible transcriptional regulator 108 2e-22 Q5HCT8.1 Q5HCT8_STAAC Putative uncharacterized protein 107 3e-22 >B2A733.1 B2A733_NATTJ YuaC Length = 183 Score = 134 bits (337), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 96/158 (60%), Gaps = 2/158 (1%) Query: 4 AIAQTMDLYGANYSFGQLYGIMFFEDKPMTLEEMKQVMNMSKSNMSYGVRSLIASRMVTX 63 A+AQTMDLYG S G+LY I++F D+P TL+E++ +M MSK++MS GVR L ++MV Sbjct: 26 AMAQTMDLYGVPPSIGRLYAILYFSDEPKTLDELRDMMGMSKTSMSTGVRRLEKNKMVKK 85 Query: 64 XXXXXXXXXXYVAETDFFQAFKNFFSLKLQREIDVMQEAMSTVMPELQALIQAADTPEEE 123 Y ETDFF F NFF +REI+V EA+ V PEL+ + +++D E Sbjct: 86 VWKKGVRKHLYEGETDFFNTFLNFFIPMWKREIEVNMEAIKKVEPELKEMAESSDG--EV 143 Query: 124 RQACLRDLDKLQHAVEYYAWLQRFVSGLEEGEFFGRLP 161 + +DL KL+ A +YY WL + +E GE F +P Sbjct: 144 SKEAEKDLKKLEEAKQYYIWLNKLARSIESGEIFDFIP 181 >A4J9F9.1 A4J9F9_DESRM Transcriptional regulator Length = 189 Score = 130 bits (327), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 99/164 (60%) Query: 1 MIDAIAQTMDLYGANYSFGQLYGIMFFEDKPMTLEEMKQVMNMSKSNMSYGVRSLIASRM 60 +ID++A+ +DLYG S G LYG + F+DKPMTL+EM + + MSK++MS GVR+L+ M Sbjct: 23 VIDSLARNIDLYGITMSIGHLYGTLLFQDKPMTLDEMGEALGMSKTSMSTGVRTLLDLNM 82 Query: 61 VTXXXXXXXXXXXYVAETDFFQAFKNFFSLKLQREIDVMQEAMSTVMPELQALIQAADTP 120 V Y E D++Q F ++FS+K ++ ID +++ + EL+ L+ D P Sbjct: 83 VNKVWMKGTRKDHYEIEQDWYQNFIDYFSIKWRKGIDDNIQSLRKSLQELKTLLSKDDLP 142 Query: 121 EEERQACLRDLDKLQHAVEYYAWLQRFVSGLEEGEFFGRLPGRE 164 ++ D++K+++++EYY WL R + E E F +P +E Sbjct: 143 TPLQEMVQADIEKIKNSLEYYDWLNRLIDTFESHEIFKYVPKKE 186 >Q2FDP7.1 Q2FDP7_STAA3 Putative uncharacterized protein Length = 187 Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 91/161 (56%), Gaps = 1/161 (0%) Query: 1 MIDAIAQTMDLYGANYSFGQLYGIMFFEDKPMTLEEMKQVMNMSKSNMSYGVRSLIASRM 60 +I++I QTMDLYG N S G LYG M FE MTL+EM+ + MSK +MS GV+ L + Sbjct: 18 VINSIGQTMDLYGTNRSVGNLYGTMVFEG-SMTLDEMRHQLQMSKPSMSAGVKKLQEFDI 76 Query: 61 VTXXXXXXXXXXXYVAETDFFQAFKNFFSLKLQREIDVMQEAMSTVMPELQALIQAADTP 120 V ++AE DFF F+NFF+ K QREID+ EA+ + +L++++D Sbjct: 77 VKQQFTRGSRKQHFIAEKDFFIFFRNFFTKKFQREIDINVEAVKDAQAIINSLLESSDLT 136 Query: 121 EEERQACLRDLDKLQHAVEYYAWLQRFVSGLEEGEFFGRLP 161 E E Q + +L H YY WL++ +E GE F P Sbjct: 137 EAETQEAQKIKSQLDHTHVYYEWLEQLTEAIESGEIFKYFP 177 >A8Z5A7.1 A8Z5A7_STAAT Possible transcriptional regulator Length = 188 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 91/161 (56%), Gaps = 1/161 (0%) Query: 1 MIDAIAQTMDLYGANYSFGQLYGIMFFEDKPMTLEEMKQVMNMSKSNMSYGVRSLIASRM 60 +I++I QTMDLYG N S G LYG M FE MTL+EM+ + MSK +MS GV+ L + Sbjct: 19 VINSIGQTMDLYGTNRSVGNLYGTMVFEG-SMTLDEMRHQLQMSKPSMSAGVKKLQEFDI 77 Query: 61 VTXXXXXXXXXXXYVAETDFFQAFKNFFSLKLQREIDVMQEAMSTVMPELQALIQAADTP 120 V ++AE DFF F+NFF+ K QREID+ EA+ + +L++++D Sbjct: 78 VKQQFTRGSRKQHFIAEKDFFIFFRNFFTKKFQREIDINVEAVKDAQAIINSLLESSDLT 137 Query: 121 EEERQACLRDLDKLQHAVEYYAWLQRFVSGLEEGEFFGRLP 161 E E Q + +L H YY WL++ +E GE F P Sbjct: 138 EAETQEAQKIKSQLDHTHVYYEWLEQLTEAIESGEIFKYFP 178 >Q5HCT8.1 Q5HCT8_STAAC Putative uncharacterized protein Length = 187 Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 91/161 (56%), Gaps = 1/161 (0%) Query: 1 MIDAIAQTMDLYGANYSFGQLYGIMFFEDKPMTLEEMKQVMNMSKSNMSYGVRSLIASRM 60 +I++I QTMDLYG N S G LYG M FE MTL+EM+ + MSK +MS GV+ L + Sbjct: 18 VINSIGQTMDLYGTNRSVGNLYGTMVFEG-SMTLDEMRHQLQMSKPSMSAGVKKLQEFDI 76 Query: 61 VTXXXXXXXXXXXYVAETDFFQAFKNFFSLKLQREIDVMQEAMSTVMPELQALIQAADTP 120 V ++AE DFF F+NFF+ K QREID+ EA+ + +L++++D Sbjct: 77 VKQQFTRGSRKQHFIAEKDFFIFFRNFFTKKFQREIDINVEAVKDAQAIINSLLESSDLT 136 Query: 121 EEERQACLRDLDKLQHAVEYYAWLQRFVSGLEEGEFFGRLP 161 E E Q + +L H YY WL++ +E GE F P Sbjct: 137 EAETQEAQKIKAQLDHTHVYYEWLEQLTEAIESGEIFKYFP 177 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.135 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 825,174,685 Number of extensions: 26404475 Number of successful extensions: 77976 Number of sequences better than 1.0e-05: 70 Number of HSP's gapped: 77930 Number of HSP's successfully gapped: 70 Length of query: 164 Length of database: 3,060,696,203 Length adjustment: 124 Effective length of query: 40 Effective length of database: 1,892,490,343 Effective search space: 75699613720 Effective search space used: 75699613720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 125 (52.8 bits)