BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0471.0004.p (378 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B2UYP9.1 B2UYP9_CLOBA ABC transporter, permease protein 324 1e-86 B2TQC0.1 B2TQC0_CLOBB ABC transporter, permease protein 322 5e-86 A7B8C9.1 A7B8C9_RUMGN Putative uncharacterized protein 303 2e-80 C4ILP0.1 C4ILP0_CLOBU Sugar ABC transporter permease 301 7e-80 B1QVY1.1 B1QVY1_CLOBU Sugar ABC transporter permease 301 7e-80 >B2UYP9.1 B2UYP9_CLOBA ABC transporter, permease protein Length = 295 Score = 324 bits (830), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 149/280 (53%), Positives = 204/280 (72%) Query: 98 ILFTLPAMVPFVLFWLAPLLYVLYLSFTEWDFMSPEKTFVGLQNYADLFSNPAFYKALRV 157 ++F LPA++P ++FW+ P+ L++SFT+WD++S E + VGL+NY +LFSN FY AL+ Sbjct: 16 LMFVLPAIIPLIVFWIVPIFKSLFISFTDWDYISAEYSIVGLKNYRELFSNKLFYDALKN 75 Query: 158 TVLFCAGSVXXXXXXXXXXXXXMNRKLKGSALYQVLLFSPWVTPTVAVSIVWSWIYEPEV 217 T +F G++ + K SA+Y+ ++FSPW+TPTVA+SIVWSWI+EP Sbjct: 76 TSIFTLGTLLPTIAGGLSLALLLRSNFKTSAIYKAIIFSPWITPTVAISIVWSWIFEPNY 135 Query: 218 GLANTVLDVFGLEKIGWLQDPKWALVGVLLVTIWKSVGWAMIFYLVALRNVPSDLLEAGD 277 G AN +L++ L K+ WLQ A+ GV++VT+WKS+GWAMIFYL AL +P DL E+ Sbjct: 136 GFANYILNLCNLPKLQWLQSSNTAMAGVIIVTVWKSIGWAMIFYLTALEKIPKDLYESAS 195 Query: 278 LDGASAGQKFFRITLPLISPTTLFLFVVQLIQALQAYDQINVLTQGGPSGSTRTLLYLYY 337 +DGA + KF ITLPLISPTT FLFV+ I +LQAYDQI VLTQGGPSGSTRTLLY+YY Sbjct: 196 IDGADSLNKFKSITLPLISPTTFFLFVITTINSLQAYDQIQVLTQGGPSGSTRTLLYMYY 255 Query: 338 QSAFESFQIGEASSVAVVLVTICMLLSVFSFGVSRRTTHY 377 Q AFE+F +GEA+++A V++ I ++LS+ F VS+R HY Sbjct: 256 QCAFENFNMGEATAIATVILFITLVLSLIQFVVSKRWVHY 295 >B2TQC0.1 B2TQC0_CLOBB ABC transporter, permease protein Length = 298 Score = 322 bits (824), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 148/280 (52%), Positives = 203/280 (72%) Query: 98 ILFTLPAMVPFVLFWLAPLLYVLYLSFTEWDFMSPEKTFVGLQNYADLFSNPAFYKALRV 157 ++F LPA++P ++FW+ P+ L++SFT+WD++S E + VGL+NY +LFSN FY AL+ Sbjct: 19 LMFVLPAIIPLIVFWIVPIFKSLFISFTDWDYISAEYSIVGLKNYRELFSNKLFYDALKN 78 Query: 158 TVLFCAGSVXXXXXXXXXXXXXMNRKLKGSALYQVLLFSPWVTPTVAVSIVWSWIYEPEV 217 T +F G++ + K SA+Y+ ++FSPW+TPTVA+SIVWSWI+EP Sbjct: 79 TSIFTLGTLLPTIAGGLSLALLLRSNFKSSAIYKAIIFSPWITPTVAISIVWSWIFEPNY 138 Query: 218 GLANTVLDVFGLEKIGWLQDPKWALVGVLLVTIWKSVGWAMIFYLVALRNVPSDLLEAGD 277 G AN +L++ L K+ WLQ A+ GV++VT+WKS+GWAMIFYL AL +P DL E+ Sbjct: 139 GFANYILNLCNLPKLQWLQSSNTAMGGVIIVTVWKSIGWAMIFYLTALEKIPKDLYESAS 198 Query: 278 LDGASAGQKFFRITLPLISPTTLFLFVVQLIQALQAYDQINVLTQGGPSGSTRTLLYLYY 337 +DGA + KF ITLPLISPTT FL V+ +I +LQAYDQI VLTQGGPSGSTRTLLY+YY Sbjct: 199 IDGADSLNKFKSITLPLISPTTFFLCVITMINSLQAYDQIQVLTQGGPSGSTRTLLYMYY 258 Query: 338 QSAFESFQIGEASSVAVVLVTICMLLSVFSFGVSRRTTHY 377 Q AFE+F +GEA+++A V++ I +LS+ F VS+R HY Sbjct: 259 QCAFENFNMGEATAIATVILVITCILSLIQFVVSKRWVHY 298 >A7B8C9.1 A7B8C9_RUMGN Putative uncharacterized protein Length = 293 Score = 303 bits (775), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 138/279 (49%), Positives = 197/279 (70%) Query: 99 LFTLPAMVPFVLFWLAPLLYVLYLSFTEWDFMSPEKTFVGLQNYADLFSNPAFYKALRVT 158 LF LPA++P ++FW+ P+L +Y+SFT+WD+M+P+ FV N+ LF + FY AL T Sbjct: 15 LFVLPALIPLIVFWIYPILRSVYISFTDWDYMTPDYNFVFFDNFISLFQDARFYDALWNT 74 Query: 159 VLFCAGSVXXXXXXXXXXXXXMNRKLKGSALYQVLLFSPWVTPTVAVSIVWSWIYEPEVG 218 V+F G++ M + KGS + + +LFSPW+TPTVAVSIVW+WIY+P G Sbjct: 75 VVFTLGTLIPTIVLGLMLALLMQKAFKGSGIIKFILFSPWITPTVAVSIVWTWIYDPNTG 134 Query: 219 LANTVLDVFGLEKIGWLQDPKWALVGVLLVTIWKSVGWAMIFYLVALRNVPSDLLEAGDL 278 +ANTV+ L ++ W++ A++ V++VT+WKS+G+AMIFYL AL VP +L EA L Sbjct: 135 IANTVMRFLHLPELQWIKSSDTAMLAVIIVTVWKSLGYAMIFYLSALEKVPKELYEASGL 194 Query: 279 DGASAGQKFFRITLPLISPTTLFLFVVQLIQALQAYDQINVLTQGGPSGSTRTLLYLYYQ 338 DGA Q+F +T+P ISPTT FL ++ ++ +LQAYDQI +LTQGGPSGSTRTLLY+YYQ Sbjct: 195 DGAKRWQRFRDVTIPCISPTTFFLVIITMVTSLQAYDQIQILTQGGPSGSTRTLLYMYYQ 254 Query: 339 SAFESFQIGEASSVAVVLVTICMLLSVFSFGVSRRTTHY 377 FE F +G+A++VA+V++ I ++LS FG S++ HY Sbjct: 255 LGFEEFNMGQATAVAIVMIIITVVLSAVQFGASKKWVHY 293 >C4ILP0.1 C4ILP0_CLOBU Sugar ABC transporter permease Length = 300 Score = 301 bits (771), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 146/292 (50%), Positives = 206/292 (70%) Query: 86 MTRSKVISGLKPILFTLPAMVPFVLFWLAPLLYVLYLSFTEWDFMSPEKTFVGLQNYADL 145 + + K+ + ++ ++F LPA++P +FWL P+ +++SFT+WD+MS VG +NY ++ Sbjct: 9 INKRKIKNLMRVLMFILPALIPLGVFWLFPMGQAIFMSFTDWDYMSSAYNIVGFENYRNI 68 Query: 146 FSNPAFYKALRVTVLFCAGSVXXXXXXXXXXXXXMNRKLKGSALYQVLLFSPWVTPTVAV 205 FS+ FY AL+ T+LF G++ + +K+ GSA+Y+ ++FSPWVTPTV + Sbjct: 69 FSDSMFYDALKNTLLFTLGTLVPTIALGLLAAVILRKKITGSAIYKAIIFSPWVTPTVVI 128 Query: 206 SIVWSWIYEPEVGLANTVLDVFGLEKIGWLQDPKWALVGVLLVTIWKSVGWAMIFYLVAL 265 SIVWSWI+EP+ GLAN +L + + K WLQ A+ V+LVT+WK GWAMIFYL AL Sbjct: 129 SIVWSWIFEPQYGLANYILQLLNMPKSQWLQSSDTAMTAVILVTVWKGFGWAMIFYLTAL 188 Query: 266 RNVPSDLLEAGDLDGASAGQKFFRITLPLISPTTLFLFVVQLIQALQAYDQINVLTQGGP 325 VP +L EA +DGA + QKF +ITLPLISPTT FL ++ I ++QAYDQI VLTQGGP Sbjct: 189 ERVPKELYEAAAVDGAGSWQKFKKITLPLISPTTFFLTIITTINSIQAYDQIQVLTQGGP 248 Query: 326 SGSTRTLLYLYYQSAFESFQIGEASSVAVVLVTICMLLSVFSFGVSRRTTHY 377 SGSTRT+LYLYYQ+AFE+F IGEA+S+AV+++ I L+ F S++ HY Sbjct: 249 SGSTRTILYLYYQTAFENFNIGEATSIAVIILLIIGALAGIQFIASKKWVHY 300 >B1QVY1.1 B1QVY1_CLOBU Sugar ABC transporter permease Length = 300 Score = 301 bits (771), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 146/292 (50%), Positives = 206/292 (70%) Query: 86 MTRSKVISGLKPILFTLPAMVPFVLFWLAPLLYVLYLSFTEWDFMSPEKTFVGLQNYADL 145 + + K+ + ++ ++F LPA++P +FWL P+ +++SFT+WD+MS VG +NY ++ Sbjct: 9 INKRKIKNLMRVLMFILPALIPLGVFWLFPMGQAIFMSFTDWDYMSSAYNIVGFENYRNI 68 Query: 146 FSNPAFYKALRVTVLFCAGSVXXXXXXXXXXXXXMNRKLKGSALYQVLLFSPWVTPTVAV 205 FS+ FY AL+ T+LF G++ + +K+ GSA+Y+ ++FSPWVTPTV + Sbjct: 69 FSDSMFYDALKNTLLFTLGTLVPTIALGLLAAVILRKKITGSAIYKAIIFSPWVTPTVVI 128 Query: 206 SIVWSWIYEPEVGLANTVLDVFGLEKIGWLQDPKWALVGVLLVTIWKSVGWAMIFYLVAL 265 SIVWSWI+EP+ GLAN +L + + K WLQ A+ V+LVT+WK GWAMIFYL AL Sbjct: 129 SIVWSWIFEPQYGLANYILQLLNMPKSQWLQSSDTAMTAVILVTVWKGFGWAMIFYLTAL 188 Query: 266 RNVPSDLLEAGDLDGASAGQKFFRITLPLISPTTLFLFVVQLIQALQAYDQINVLTQGGP 325 VP +L EA +DGA + QKF +ITLPLISPTT FL ++ I ++QAYDQI VLTQGGP Sbjct: 189 ERVPKELYEAAAVDGAGSWQKFKKITLPLISPTTFFLTIITTINSIQAYDQIQVLTQGGP 248 Query: 326 SGSTRTLLYLYYQSAFESFQIGEASSVAVVLVTICMLLSVFSFGVSRRTTHY 377 SGSTRT+LYLYYQ+AFE+F IGEA+S+AV+++ I L+ F S++ HY Sbjct: 249 SGSTRTILYLYYQTAFENFNIGEATSIAVIILLIIGALAGIQFIASKKWVHY 300 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.139 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,030,410,594 Number of extensions: 78581796 Number of successful extensions: 265469 Number of sequences better than 1.0e-05: 5979 Number of HSP's gapped: 256118 Number of HSP's successfully gapped: 5987 Length of query: 378 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 241 Effective length of database: 1,770,017,148 Effective search space: 426574132668 Effective search space used: 426574132668 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 132 (55.5 bits)