BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0471.0003.p (278 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B2UYP8.1 B2UYP8_CLOBA Sugar ABC transporter, permease protein 266 2e-69 B2TQB9.1 B2TQB9_CLOBB Sugar transport system permease protein 266 2e-69 C4ILP1.1 C4ILP1_CLOBU Binding-protein-dependent transport system... 262 2e-68 B1QVY2.1 B1QVY2_CLOBU Sugar ABC transporter, permease 262 2e-68 C0C140.1 C0C140_9CLOT Putative uncharacterized protein 246 2e-63 >B2UYP8.1 B2UYP8_CLOBA Sugar ABC transporter, permease protein Length = 303 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 127/247 (51%), Positives = 175/247 (70%) Query: 27 WMVTSALKTNDEIWRSPPTLWPEVPLWGNFSAAWNEAPFARYMGNSIFVAASIVILQIIN 86 WMV+SALK DE++ PP L P P W NF + EA F +YM NS F + V Q+ Sbjct: 54 WMVSSALKVKDEVFIFPPKLIPSNPQWNNFIDVFKEAQFGQYMFNSFFTSFIEVAFQVFT 113 Query: 87 SGMMAYALTHMKFRLKGLFAGVILFGYMVPATAVYLPGYLVLSELHLLNSYAGLILSNCV 146 + M+AYALT ++FR K L GVI+ YM+P+ Y+P Y++LS L+L+++ +GLI+SN V Sbjct: 114 AAMIAYALTLLEFRGKRLLFGVIMAIYMLPSAVTYVPCYILLSNLNLIDTLSGLIVSNLV 173 Query: 147 SIFAIFLIRQAFLQVSHELVEAGEVDGASHMRILWTVLVPVTRSSFAVLALITFIDQYNN 206 SIF IFL+RQAFLQV+ L+EA +DGASH +ILW ++ P+T+ +F L LI F+ YN+ Sbjct: 174 SIFGIFLLRQAFLQVNKSLIEAARIDGASHFKILWKIVFPITKPTFITLILINFVTYYND 233 Query: 207 YFWPMLITKNPDLQLVSAGLRSFFVEGGAYGLQWPLIMAASAFTIAPLLLVFLLAQKTIM 266 Y +P LI K+P+ L+S+GLR FF+EGGAYG++WP IMAAS TI PLL++F+LAQK M Sbjct: 234 YMYPSLILKSPEKFLISSGLRQFFIEGGAYGIKWPQIMAASTITILPLLILFVLAQKWFM 293 Query: 267 QSVNMTA 273 + + T Sbjct: 294 KGIGDTG 300 >B2TQB9.1 B2TQB9_CLOBB Sugar transport system permease protein Length = 303 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 126/247 (51%), Positives = 175/247 (70%) Query: 27 WMVTSALKTNDEIWRSPPTLWPEVPLWGNFSAAWNEAPFARYMGNSIFVAASIVILQIIN 86 WM +SALK DE++ PP L P P W NF + EA F +YM NS F + V LQ+ Sbjct: 54 WMASSALKVKDEVFLFPPKLIPSNPQWNNFIDVFKEAQFGQYMFNSFFTSFIEVALQVFT 113 Query: 87 SGMMAYALTHMKFRLKGLFAGVILFGYMVPATAVYLPGYLVLSELHLLNSYAGLILSNCV 146 + M+AYALT +KFR K L GVI+ YM+P+ Y+P Y++LS L+L+++ +GLI+SN V Sbjct: 114 AAMIAYALTLLKFRGKRLLFGVIMAMYMLPSAVTYVPCYILLSNLNLVDTLSGLIVSNLV 173 Query: 147 SIFAIFLIRQAFLQVSHELVEAGEVDGASHMRILWTVLVPVTRSSFAVLALITFIDQYNN 206 SIF IFL+RQAFLQV+ L+EA +DGASH +ILW ++ P+T+ +F L LI F+ YN+ Sbjct: 174 SIFGIFLLRQAFLQVNKSLIEAARIDGASHFKILWKIVFPITKPTFITLILINFVTYYND 233 Query: 207 YFWPMLITKNPDLQLVSAGLRSFFVEGGAYGLQWPLIMAASAFTIAPLLLVFLLAQKTIM 266 Y +P LI K+P+ L+S+GLR FF+EGGAYG++WP +MAAS TI PLL++F++AQK M Sbjct: 234 YMYPSLILKSPEKFLISSGLRQFFIEGGAYGIKWPQVMAASTITILPLLILFVIAQKWFM 293 Query: 267 QSVNMTA 273 + + T Sbjct: 294 KGIGDTG 300 >C4ILP1.1 C4ILP1_CLOBU Binding-protein-dependent transport systems inner membrane component Length = 306 Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 126/266 (47%), Positives = 175/266 (65%) Query: 4 RLGGPVRHXXXXXXXXXXXXXXYWMVTSALKTNDEIWRSPPTLWPEVPLWGNFSAAWNEA 63 R+G RH WMVTSALK+ EI+ PP + P P W FS + EA Sbjct: 34 RIGTCSRHILLIFISIATFFPFIWMVTSALKSRQEIFTFPPNIIPANPNWHIFSDVFKEA 93 Query: 64 PFARYMGNSIFVAASIVILQIINSGMMAYALTHMKFRLKGLFAGVILFGYMVPATAVYLP 123 PFA YM NS+ VA VI QII++ M+AYALT KF + + G+++ YM+P+ Y+P Sbjct: 94 PFATYMFNSLSVATIEVIFQIISAAMIAYALTQFKFVGRKVLFGIVMCTYMLPSAVTYVP 153 Query: 124 GYLVLSELHLLNSYAGLILSNCVSIFAIFLIRQAFLQVSHELVEAGEVDGASHMRILWTV 183 Y++L +L+LL++ GL +SN V++ IFLIRQAF+QV +EA VDGASH++ILW + Sbjct: 154 CYIILGKLNLLDTLTGLTISNLVNVLGIFLIRQAFMQVDKSFIEAARVDGASHIKILWKI 213 Query: 184 LVPVTRSSFAVLALITFIDQYNNYFWPMLITKNPDLQLVSAGLRSFFVEGGAYGLQWPLI 243 + P+T+ +F LI+F+ YN Y +P LITK+P+ L+SAG+R FF++ GAYG +WP I Sbjct: 214 MFPLTKPTFITFGLISFVTYYNEYMYPSLITKSPEKFLISAGIRQFFIQDGAYGTKWPEI 273 Query: 244 MAASAFTIAPLLLVFLLAQKTIMQSV 269 MAAS T+ PLL++FL+AQK M V Sbjct: 274 MAASTITVLPLLILFLIAQKWFMDGV 299 >B1QVY2.1 B1QVY2_CLOBU Sugar ABC transporter, permease Length = 306 Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 126/266 (47%), Positives = 175/266 (65%) Query: 4 RLGGPVRHXXXXXXXXXXXXXXYWMVTSALKTNDEIWRSPPTLWPEVPLWGNFSAAWNEA 63 R+G RH WMVTSALK+ EI+ PP + P P W FS + EA Sbjct: 34 RIGTCSRHILLIFISIATFFPFIWMVTSALKSRQEIFTFPPNIIPANPNWHIFSDVFKEA 93 Query: 64 PFARYMGNSIFVAASIVILQIINSGMMAYALTHMKFRLKGLFAGVILFGYMVPATAVYLP 123 PFA YM NS+ VA VI QII++ M+AYALT KF + + G+++ YM+P+ Y+P Sbjct: 94 PFATYMFNSLSVATIEVIFQIISAAMIAYALTQFKFVGRKVLFGIVMCTYMLPSAVTYVP 153 Query: 124 GYLVLSELHLLNSYAGLILSNCVSIFAIFLIRQAFLQVSHELVEAGEVDGASHMRILWTV 183 Y++L +L+LL++ GL +SN V++ IFLIRQAF+QV +EA VDGASH++ILW + Sbjct: 154 CYIILGKLNLLDTLTGLTISNLVNVLGIFLIRQAFMQVDKSFIEAARVDGASHIKILWKI 213 Query: 184 LVPVTRSSFAVLALITFIDQYNNYFWPMLITKNPDLQLVSAGLRSFFVEGGAYGLQWPLI 243 + P+T+ +F LI+F+ YN Y +P LITK+P+ L+SAG+R FF++ GAYG +WP I Sbjct: 214 MFPLTKPTFITFGLISFVTYYNEYMYPSLITKSPEKFLISAGIRQFFIQDGAYGTKWPEI 273 Query: 244 MAASAFTIAPLLLVFLLAQKTIMQSV 269 MAAS T+ PLL++FL+AQK M V Sbjct: 274 MAASTITVLPLLILFLIAQKWFMDGV 299 >C0C140.1 C0C140_9CLOT Putative uncharacterized protein Length = 302 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 117/248 (47%), Positives = 165/248 (66%), Gaps = 1/248 (0%) Query: 27 WMVTSALKTNDEIWRSPPTLWPEVPLWGNFSAAWNEAPFARYMGNSIFVAASIVILQIIN 86 WMV SALKT E+ +P P W NF + E+P RY+GNS+FV+ + V LQ++ Sbjct: 53 WMVLSALKTKAEV-MDVTQFFPASPQWQNFRSVLFESPLLRYIGNSLFVSTATVGLQLVT 111 Query: 87 SGMMAYALTHMKFRLKGLFAGVILFGYMVPATAVYLPGYLVLSELHLLNSYAGLILSNCV 146 M+ YA+ M FR + +I+ YM+P A Y+P Y++L++ ++LN+Y GLI+S+ V Sbjct: 112 GAMITYAMVFMTFRGRKALFALIMGTYMLPTAATYIPSYIILADWNMLNTYRGLIISSMV 171 Query: 147 SIFAIFLIRQAFLQVSHELVEAGEVDGASHMRILWTVLVPVTRSSFAVLALITFIDQYNN 206 SIF IFL+RQAF+QV ++EA +DGASH +ILW ++ P+T+SSF L++FI YNN Sbjct: 172 SIFGIFLLRQAFMQVPAGMIEAARIDGASHWQILWKIVAPMTKSSFITFILMSFITCYNN 231 Query: 207 YFWPMLITKNPDLQLVSAGLRSFFVEGGAYGLQWPLIMAASAFTIAPLLLVFLLAQKTIM 266 Y WP LIT +P+L LVS GLR FF+EGGAYG +WPL+MA S + PLL++F QK + Sbjct: 232 YMWPSLITDSPELSLVSQGLRRFFIEGGAYGTEWPLVMAGSTLIVVPLLILFGFTQKWFI 291 Query: 267 QSVNMTAG 274 + G Sbjct: 292 NGIGGDTG 299 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.138 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,490,235,693 Number of extensions: 56764073 Number of successful extensions: 200136 Number of sequences better than 1.0e-05: 5678 Number of HSP's gapped: 193178 Number of HSP's successfully gapped: 5679 Length of query: 278 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 144 Effective length of database: 1,798,280,193 Effective search space: 258952347792 Effective search space used: 258952347792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)