BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0470.0039.p (297 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KHP7.1 B3KHP7_9BACI LysR substrate-binding 445 e-123 B1D6E8.1 B1D6E8_9BACL Transcriptional regulator, LysR family 396 e-108 C2QKL6.1 C2QKL6_BACCE LysR family transcriptional regulator 243 2e-62 B4AF37.1 B4AF37_BACPU LysR family transcriptional regulator 239 2e-61 Q73EP9.1 Q73EP9_BACC1 Transcriptional regulator, LysR family pro... 239 3e-61 >B3KHP7.1 B3KHP7_9BACI LysR substrate-binding Length = 292 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 212/287 (73%), Positives = 245/287 (85%) Query: 1 LNIENIEAFVYINHYGSFNKAADVLYISQPTVTARIHSLERELDCRVFDRVGKQINLTDK 60 +NIENIEAFVYINHYGSFNKAADVL++SQPTVTARI SLERELDCR+FDR+GKQI+LTDK Sbjct: 1 MNIENIEAFVYINHYGSFNKAADVLFLSQPTVTARIQSLERELDCRLFDRLGKQIHLTDK 60 Query: 61 GRQFLPYAQQILQVYQSGKHQVQSKGLVPDELRIGSTISVSNYLMPQLLVHLKGAYPNLN 120 G+QFLPYAQQILQ +Q GKH +QSK +P+ELRIGST+SVSNYLMP LL+ L +P +N Sbjct: 61 GKQFLPYAQQILQTFQKGKHHLQSKASMPNELRIGSTVSVSNYLMPYLLMVLNRRFPEMN 120 Query: 121 IKLTTAPTEVLIDKLKAKDIDLAFIRKVVNPAIQAYPFCEDPISLYVYEGHPLAQARRAS 180 KLTT PTE L KL +KDIDLAF+RK++NPA Q+YPF EDPI LYVY+ HPLA A RAS Sbjct: 121 FKLTTGPTEELAGKLSSKDIDLAFVRKLMNPAFQSYPFFEDPIRLYVYKDHPLAAAGRAS 180 Query: 181 IQDIRRETLVFFECGSLDWLRLHRVFESMEQPPDIVYQVDNLETAKKLVLRKAGIAFLPA 240 I+DIR ETLVFFECGSLDWLR+HRVFES+EQPP+IV+QVDN ETAKKLVL +AGI FLP Sbjct: 181 IRDIRHETLVFFECGSLDWLRIHRVFESLEQPPNIVFQVDNSETAKKLVLGRAGICFLPG 240 Query: 241 LSVQEEVAAGTLTRVEIAETEGISLRTSLISLNGEYAGFIQTLLELG 287 Q+EVA G+L V+IAET GISL+T LISLNG F+ +LLELG Sbjct: 241 RCAQQEVAEGSLIPVDIAETAGISLQTHLISLNGHNNEFLDSLLELG 287 >B1D6E8.1 B1D6E8_9BACL Transcriptional regulator, LysR family Length = 294 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 188/284 (66%), Positives = 230/284 (80%) Query: 1 LNIENIEAFVYINHYGSFNKAADVLYISQPTVTARIHSLERELDCRVFDRVGKQINLTDK 60 +NIENIEAFVY+NHYGSFNKAA+VL++SQP+VTARI +LERELDCR+FDR+GKQI LT+K Sbjct: 1 MNIENIEAFVYVNHYGSFNKAAEVLFLSQPSVTARIQTLERELDCRLFDRLGKQIMLTEK 60 Query: 61 GRQFLPYAQQILQVYQSGKHQVQSKGLVPDELRIGSTISVSNYLMPQLLVHLKGAYPNLN 120 G+QFLPYAQQILQ Q G+ +Q KG P ELRIGST+SVSNYL+P LL L +P L Sbjct: 61 GKQFLPYAQQILQTIQKGRLHLQEKGARPQELRIGSTVSVSNYLIPDLLPRLTRLFPRLT 120 Query: 121 IKLTTAPTEVLIDKLKAKDIDLAFIRKVVNPAIQAYPFCEDPISLYVYEGHPLAQARRAS 180 KLTTAP++ L+ KL K+ID+AF+RK+V+P++Q++ + EDPI LYVYEGHP A+ R S Sbjct: 121 FKLTTAPSDDLVKKLLDKEIDIAFVRKLVHPSLQSFSYYEDPIRLYVYEGHPFAEEGRVS 180 Query: 181 IQDIRRETLVFFECGSLDWLRLHRVFESMEQPPDIVYQVDNLETAKKLVLRKAGIAFLPA 240 I +IR + LVFFECGSLDWLRLHRVFE +EQPP IV+ DN ETAKKLVL+KAGI FLP Sbjct: 181 IDEIRDQPLVFFECGSLDWLRLHRVFEHLEQPPRIVFHADNSETAKKLVLQKAGICFLPG 240 Query: 241 LSVQEEVAAGTLTRVEIAETEGISLRTSLISLNGEYAGFIQTLL 284 L +EEV+ G L +EI ET+GISL T+LI+L GE +IQ LL Sbjct: 241 LCAREEVSKGRLIPIEIEETKGISLHTNLIALTGENEEYIQALL 284 >C2QKL6.1 C2QKL6_BACCE LysR family transcriptional regulator Length = 289 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 115/274 (41%), Positives = 182/274 (66%), Gaps = 1/274 (0%) Query: 1 LNIENIEAFVYINHYGSFNKAADVLYISQPTVTARIHSLERELDCRVFDRVGKQINLTDK 60 +NIENIEAF+Y+ GSFNKAA+ LY++QP+VTARI SLERE++ ++F R G +I+LT+K Sbjct: 1 MNIENIEAFIYVCQLGSFNKAAEALYLAQPSVTARIQSLEREINIKLFHRNGNKISLTEK 60 Query: 61 GRQFLPYAQQILQVYQSGKHQVQSKGLVPDELRIGSTISVSNYLMPQLLVHLKGAYPNLN 120 G F P+AQ+ILQ YQ K+ +Q + +P +L IGS +S+SN + P++L K + ++ Sbjct: 61 GEYFFPHAQKILQSYQEAKYGLQ-QVTIPYDLVIGSALSISNNIFPEILPAFKSEFRDVR 119 Query: 121 IKLTTAPTEVLIDKLKAKDIDLAFIRKVVNPAIQAYPFCEDPISLYVYEGHPLAQARRAS 180 IK+ T ++ ++ K+ K++D IR +P +++ DPI L+V H + + + Sbjct: 120 IKIVTGHSQDILQKVINKEVDFGIIRTETHPQVESIRLYNDPIGLFVPRNHIFLKEEKVT 179 Query: 181 IQDIRRETLVFFECGSLDWLRLHRVFESMEQPPDIVYQVDNLETAKKLVLRKAGIAFLPA 240 I+D+ ++ L+FF+ GS+DWL +HR+F S + P+I +VDN+ETAK LV++ GI+FLP Sbjct: 180 IEDVSKQPLIFFDYGSMDWLMIHRLFSSNDVSPNISLEVDNMETAKNLVIQGMGISFLPE 239 Query: 241 LSVQEEVAAGTLTRVEIAETEGISLRTSLISLNG 274 ++E+ G L RVE+ I++ I L G Sbjct: 240 HCFKQELENGELIRVEMTPPVKINISIDFIYLKG 273 >B4AF37.1 B4AF37_BACPU LysR family transcriptional regulator Length = 291 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 114/275 (41%), Positives = 177/275 (64%), Gaps = 1/275 (0%) Query: 1 LNIENIEAFVYINHYGSFNKAADVLYISQPTVTARIHSLERELDCRVFDRVGKQINLTDK 60 +NIENIEAF+Y+ GS NKAA+ LY++QP+V+ARI SLE+ELD ++FDR +++LT+K Sbjct: 1 MNIENIEAFIYVCQLGSINKAAEALYLTQPSVSARIQSLEKELDLKLFDRQRNKLSLTEK 60 Query: 61 GRQFLPYAQQILQVYQSGKHQVQSKGLVPDELRIGSTISVSNYLMPQLLVHLKGAYPNLN 120 G QF P+A++IL YQ KH ++ + ++P EL IG S+SN L+P +L LK Y NL Sbjct: 61 GEQFYPHAKKILHSYQEAKHSLK-QTMIPYELTIGCASSISNNLLPNILPALKEKYENLK 119 Query: 121 IKLTTAPTEVLIDKLKAKDIDLAFIRKVVNPAIQAYPFCEDPISLYVYEGHPLAQARRAS 180 +K+ T ++ ++ K+ +D +R +P I++ P DPI L+V HPLA + Sbjct: 120 VKIVTGHSKDVVQKVINNQVDFGIVRTETHPQIESIPIFSDPIGLFVPTHHPLASLDNIN 179 Query: 181 IQDIRRETLVFFECGSLDWLRLHRVFESMEQPPDIVYQVDNLETAKKLVLRKAGIAFLPA 240 ++++ + +FF+ GS DWL LHR+F+ P+I +VD++ETAK LVL+ G++FLP Sbjct: 180 MKELEEQPFIFFDYGSFDWLMLHRLFQKNSITPNISIEVDHMETAKNLVLQGMGLSFLPH 239 Query: 241 LSVQEEVAAGTLTRVEIAETEGISLRTSLISLNGE 275 V+ EV GTL ++ I + ++ I G+ Sbjct: 240 HCVRNEVEQGTLKQISIDPSINFNINIEFIYKKGK 274 >Q73EP9.1 Q73EP9_BACC1 Transcriptional regulator, LysR family protein Length = 289 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 113/274 (41%), Positives = 182/274 (66%), Gaps = 1/274 (0%) Query: 1 LNIENIEAFVYINHYGSFNKAADVLYISQPTVTARIHSLERELDCRVFDRVGKQINLTDK 60 +NIENIEAF+Y+ GSFNKAA+ LY++QP+VTARI SLERE++ ++F R G +I+LT+K Sbjct: 1 MNIENIEAFIYVCQLGSFNKAAEALYLTQPSVTARIQSLEREINIKLFHRNGNKISLTEK 60 Query: 61 GRQFLPYAQQILQVYQSGKHQVQSKGLVPDELRIGSTISVSNYLMPQLLVHLKGAYPNLN 120 G F P+AQ+ILQ YQ K+ +Q + +P +L IGS +S+SN ++P++L K + ++ Sbjct: 61 GEYFFPHAQKILQSYQEAKYGLQ-QVTIPYDLVIGSALSISNNILPEILPGFKSEFKDVR 119 Query: 121 IKLTTAPTEVLIDKLKAKDIDLAFIRKVVNPAIQAYPFCEDPISLYVYEGHPLAQARRAS 180 IK+ T ++ ++ K+ K++D +R + +++ DPI L+V H + + + Sbjct: 120 IKIVTGHSQDILQKVINKEVDFGIVRTETHXQVESIRLYNDPIGLFVPRNHIFLKEEKVT 179 Query: 181 IQDIRRETLVFFECGSLDWLRLHRVFESMEQPPDIVYQVDNLETAKKLVLRKAGIAFLPA 240 I+ + ++ L+FF+ GS+DWL +HR+F S + P+I +VDN+ETAK LV++ GI+FLP Sbjct: 180 IEHVSKQPLIFFDYGSMDWLMIHRLFSSNDVSPNISLEVDNMETAKNLVIQGMGISFLPE 239 Query: 241 LSVQEEVAAGTLTRVEIAETEGISLRTSLISLNG 274 V++E+ G L RVE+ I++ I L G Sbjct: 240 HCVKQELENGELIRVEMTPPVKINISIDFIYLKG 273 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,631,543,057 Number of extensions: 63007037 Number of successful extensions: 198015 Number of sequences better than 1.0e-05: 13624 Number of HSP's gapped: 189599 Number of HSP's successfully gapped: 13624 Length of query: 297 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 162 Effective length of database: 1,788,859,178 Effective search space: 289795186836 Effective search space used: 289795186836 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)