BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0470.0037.p (293 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D6E6.1 B1D6E6_9BACL Extracellular solute-binding protein family 3 418 e-115 B3KHP8.1 B3KHP8_9BACI Extracellular solute-binding protein family 3 392 e-107 C2BY34.1 C2BY34_LISGR Amino acid ABC superfamily ATP binding cas... 237 1e-60 B1HWB7.1 B1HWB7_LYSSC Polar amino acid transport system substrat... 231 4e-59 A3ICS4.1 A3ICS4_9BACI Putative uncharacterized protein 231 7e-59 >B1D6E6.1 B1D6E6_9BACL Extracellular solute-binding protein family 3 Length = 297 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 201/276 (72%), Positives = 231/276 (83%), Gaps = 5/276 (1%) Query: 18 AGCGTNNNANSSQGSNTAEAAAKTSXXXGPPAATDAGQVTKIVVGTGTGFPQVCFIDENG 77 AGCG+NN ++++Q N +AAA S + G+V K+V+GTGTGFPQVCFIDENG Sbjct: 27 AGCGSNNKSDNTQAQNGNKAAANVS-----ASGNAGGEVKKVVIGTGTGFPQVCFIDENG 81 Query: 78 KLTGFDVELLKDIDSRLPQYEFELQTMDFSNLLLSLDTKKIDLVAHVMEKNPEREQKYLF 137 KLTGFDVEL+K+ID RLPQYEF++QTM+FSNLLLSL+T KIDLVAH MEKNPERE KYLF Sbjct: 82 KLTGFDVELIKEIDKRLPQYEFDIQTMEFSNLLLSLETNKIDLVAHEMEKNPEREAKYLF 141 Query: 138 NTEPYAHWRNRIVVAKDNNSIKTLDDLKGKKALVGATSAQAQILENYNKEHDNAIKIVYQ 197 NTEPYAHWRN+IVV +DNN+I +LDDL GKK LVGATSAQAQILENYNK+HD I IVYQ Sbjct: 142 NTEPYAHWRNKIVVPQDNNTIHSLDDLAGKKVLVGATSAQAQILENYNKDHDKKINIVYQ 201 Query: 198 NGAANDTVSQISSGRVDATLAADFVLPVIDPQAKLKASGPELSSADILYVLRKDDADSKT 257 NGAANDTVSQI++GRVDATLAADF L +IDPQAKLK +G LS ADIL+VLRK+D + Sbjct: 202 NGAANDTVSQITTGRVDATLAADFTLSLIDPQAKLKTTGDNLSEADILFVLRKNDPAEQE 261 Query: 258 LADAIDGAIKELKADGTLAKLSTEWLGADVTADEVK 293 L+DAID A+KELKADGTL KLSTEWLG D TAD K Sbjct: 262 LSDAIDVALKELKADGTLGKLSTEWLGGDFTADSAK 297 >B3KHP8.1 B3KHP8_9BACI Extracellular solute-binding protein family 3 Length = 278 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 189/289 (65%), Positives = 226/289 (78%), Gaps = 14/289 (4%) Query: 1 MKKXXXXXXXXXXXXXXAGCGTNNNANSSQGSNTAEAAAKTSXXXGPPAATDAGQVTKIV 60 MKK AGCGT + +Q +TA AA G+VTK+V Sbjct: 1 MKKSIVAAVVIALAGVIAGCGTGTKSGEAQKDSTANAAE--------------GKVTKVV 46 Query: 61 VGTGTGFPQVCFIDENGKLTGFDVELLKDIDSRLPQYEFELQTMDFSNLLLSLDTKKIDL 120 VGTGT FP++CFIDENGKLTGFDVEL+++ID RLP+YEFELQT +FSNLLLSL+TKKID Sbjct: 47 VGTGTAFPRICFIDENGKLTGFDVELVREIDQRLPEYEFELQTQEFSNLLLSLETKKIDF 106 Query: 121 VAHVMEKNPEREQKYLFNTEPYAHWRNRIVVAKDNNSIKTLDDLKGKKALVGATSAQAQI 180 VAH MEKNPER +KYLFN EPYA+WRN+I+VAK+N+SI++L+DLKGKK L GATSA AQI Sbjct: 107 VAHQMEKNPERTEKYLFNKEPYAYWRNKIIVAKENDSIQSLNDLKGKKVLTGATSAAAQI 166 Query: 181 LENYNKEHDNAIKIVYQNGAANDTVSQISSGRVDATLAADFVLPVIDPQAKLKASGPELS 240 LENYNK+++NAI IVYQNGAANDTVSQI++GRVDAT+ ADF LP+IDPQ KLK +G LS Sbjct: 167 LENYNKDNNNAINIVYQNGAANDTVSQITTGRVDATVGADFTLPLIDPQGKLKTTGDHLS 226 Query: 241 SADILYVLRKDDADSKTLADAIDGAIKELKADGTLAKLSTEWLGADVTA 289 ADIL+V RKDD +S+ L+DA+D AIKELK+DGTL KLS EWLG D T+ Sbjct: 227 EADILFVFRKDDPESQKLSDAVDNAIKELKSDGTLTKLSKEWLGDDFTS 275 >C2BY34.1 C2BY34_LISGR Amino acid ABC superfamily ATP binding cassette transporter, binding protein Length = 284 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 116/233 (49%), Positives = 158/233 (67%), Gaps = 5/233 (2%) Query: 58 KIVVGTGTGFPQVCFIDENGKLTGFDVELLKDIDSRLPQYEFELQTMDFSNLLLSLDTKK 117 ++++GTGT FP +CFID+NGKLTG+DVE+++ ID +LP Y+F+ +TMDF+NLL SL +K Sbjct: 49 QVIIGTGTQFPNICFIDKNGKLTGYDVEVMRAIDKKLPDYQFKFKTMDFANLLTSLANRK 108 Query: 118 IDLVAHVMEKNPEREQKYLFNTEPYAHWRNRIVVAKDNNSIKTLDDLKGKKALVGATSAQ 177 ID+VAH M KN ERE+++LFN EPY + I K NNSI TLDDL GK +VGATS Sbjct: 109 IDVVAHNMAKNKEREKQFLFNQEPYNYSPLYITTKKSNNSIHTLDDLNGKNVIVGATSNA 168 Query: 178 AQILENYNKEHDNAIKIVYQNGAANDTVSQISSGRVDATLAADFVLPVIDP--QAKLKAS 235 A + NYNK++DN I + Y +ND +QI +GR DATL+ F + + AK K Sbjct: 169 ADYIRNYNKKNDNKIHLRYAGQGSNDAANQIETGRADATLSTPFAVDFQNKTQSAKQKTV 228 Query: 236 GPELSSADILYVLRKDDADSKTLADAIDGAIKELKADGTLAKLSTEWLGADVT 288 G + + ++ K++ K LAD +D AIKEL+ DGTL KLS +WLG D + Sbjct: 229 GKVILDTKVYFIFAKNN---KKLADEVDTAIKELEKDGTLKKLSEKWLGGDYS 278 >B1HWB7.1 B1HWB7_LYSSC Polar amino acid transport system substrate-binding protein Length = 272 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 115/237 (48%), Positives = 162/237 (68%), Gaps = 6/237 (2%) Query: 56 VTKIVVGTGTGFPQVCFIDENGKLTGFDVELLKDIDSRLPQYEFELQTMDFSNLLLSLDT 115 V KI+VGTGT FP +CFIDE G LTG+DVEL++ ID +LP+YEF+L+TM+FSNLLLSL+T Sbjct: 39 VQKIIVGTGTQFPNICFIDEKGNLTGYDVELVRAIDEKLPEYEFDLKTMEFSNLLLSLET 98 Query: 116 KKIDLVAHVMEKNPEREQKYLFNTEPYAHWRNRIVVAKDNNSIKTLDDLKGKKALVGATS 175 +KID +AH ME N ERE+K+LFN EPY + ++ V + NN I++++DLKGK V TS Sbjct: 99 RKIDFIAHQMEVNSEREEKFLFNKEPYNVFPLKVTVNEKNNEIQSIEDLKGKNVSVSPTS 158 Query: 176 AQAQILENYNKEHDNAIKIVYQNGAANDTVSQISSGRVDATLAADFVLPVIDP--QAKLK 233 A LE YNK+H IVY +G+ D +Q++SGR+DA + F + + +A+ K Sbjct: 159 NSAVFLEKYNKDHHLGANIVYSSGSV-DVNNQLASGRIDAIITTPFAVKYYNESNEAQQK 217 Query: 234 ASGPELSSADILYVLRKDDADSKTLADAIDGAIKELKADGTLAKLSTEWLGADVTAD 290 G L ++ + ++L KD+ L + +D AI ELK +G ++KLS +WLG D T D Sbjct: 218 VVGDALLNSKVYFLLNKDEV---KLQERLDEAIVELKKEGVISKLSKKWLGDDYTVD 271 >A3ICS4.1 A3ICS4_9BACI Putative uncharacterized protein Length = 274 Score = 231 bits (588), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 114/237 (48%), Positives = 161/237 (67%), Gaps = 6/237 (2%) Query: 56 VTKIVVGTGTGFPQVCFIDENGKLTGFDVELLKDIDSRLPQYEFELQTMDFSNLLLSLDT 115 V KI+VGTGT FP +CFIDE G LTG+DVEL++ ID +LP+YEFEL+TM+FSNLLLSL+T Sbjct: 41 VQKIIVGTGTQFPNICFIDEKGNLTGYDVELVRAIDEKLPEYEFELKTMEFSNLLLSLET 100 Query: 116 KKIDLVAHVMEKNPEREQKYLFNTEPYAHWRNRIVVAKDNNSIKTLDDLKGKKALVGATS 175 +KID +AH ME N ERE+K+LFN EPY + ++ V + NN I++++DLKGK V TS Sbjct: 101 RKIDFIAHQMEVNSEREEKFLFNKEPYNVFPLKVTVNEKNNEIQSIEDLKGKNVSVSPTS 160 Query: 176 AQAQILENYNKEHDNAIKIVYQNGAANDTVSQISSGRVDATLAADFVLPVIDP--QAKLK 233 A +E YNK+H IVY +G+ D +Q++SGR+DA + F + + +A+ K Sbjct: 161 NSAVFIEKYNKDHHLGANIVYSSGSV-DVNNQLASGRIDAIITTPFAVKYYNESNEAQQK 219 Query: 234 ASGPELSSADILYVLRKDDADSKTLADAIDGAIKELKADGTLAKLSTEWLGADVTAD 290 G L ++ + ++L KD+ L + +D AI ELK +G ++ LS +WLG D T D Sbjct: 220 VVGDALLNSKVYFLLNKDEV---KLQERLDEAIVELKKEGVISNLSKKWLGDDYTVD 273 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.311 0.128 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,601,341,891 Number of extensions: 64136258 Number of successful extensions: 173572 Number of sequences better than 1.0e-05: 3239 Number of HSP's gapped: 170620 Number of HSP's successfully gapped: 3246 Length of query: 293 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 159 Effective length of database: 1,798,280,193 Effective search space: 285926550687 Effective search space used: 285926550687 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 130 (54.7 bits)