BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0470.0036.p (260 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KHP9.1 B3KHP9_9BACI Polar amino acid ABC transporter, inner me... 381 e-104 B1D6E5.1 B1D6E5_9BACL Polar amino acid ABC transporter, inner me... 323 1e-86 Q71X81.1 Q71X81_LISMF Amino acid ABC transporter, permease protein 202 3e-50 Q4EJL1.1 Q4EJL1_LISMO Amino acid ABC transporter, permease protein 202 3e-50 Q8Y4T4.1 Q8Y4T4_LISMO Lmo2348 protein 202 3e-50 >B3KHP9.1 B3KHP9_9BACI Polar amino acid ABC transporter, inner membrane subunit Length = 261 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 194/259 (74%), Positives = 214/259 (82%) Query: 1 MGAPFDISYVFXXXXXXXXXXXXXXXIVGFSLLAGIVVGFLVALPRLYKVPVLKTFAEIY 60 MGAPFD SYVF IV SLL GIVVGFLVALPRLY++P+L F+ +Y Sbjct: 1 MGAPFDYSYVFSFLPKLLSTLGVTMLIVAGSLLVGIVVGFLVALPRLYRIPMLNAFSMVY 60 Query: 61 ISFFRGTPILIQLFLFYYGLPEILKLVHVDVTRTPVLFFVILTYGLHTGAFMSEMIRASV 120 ISFFRGTPILIQLFLFYYGLPE+LKLVH+D++R PV+ FVILTYGLHTGAFMSEMIRASV Sbjct: 61 ISFFRGTPILIQLFLFYYGLPEMLKLVHIDLSRAPVMVFVILTYGLHTGAFMSEMIRASV 120 Query: 121 TAVDRGQVEAAYAAGMTSFQAFSRIVLPQALGIAVPVFSNLVIALLKDTSLAFTLGVMEM 180 TAVDRGQVEAAYA GM QAF RIVLPQAL IAVPVFSN+VIALLKDTSLAFTLG+MEM Sbjct: 121 TAVDRGQVEAAYAMGMKGHQAFLRIVLPQALAIAVPVFSNMVIALLKDTSLAFTLGLMEM 180 Query: 181 TGKAQTLGSISQHFIETYIALALIYLVISFTLEKLLLVAERRLLRHEVPGSPERKTFSLQ 240 TGKAQTLG+I+QHFIE Y+ALA IYLVISFTLEKLLL AERRL+RHEVP S RK F +Q Sbjct: 181 TGKAQTLGNITQHFIEAYLALAFIYLVISFTLEKLLLRAERRLMRHEVPESAARKRFRIQ 240 Query: 241 KHGSYRRMIAQMGSGKGGG 259 + SYRR+IA + KGG Sbjct: 241 EKLSYRRIIAGIRPEKGGA 259 >B1D6E5.1 B1D6E5_9BACL Polar amino acid ABC transporter, inner membrane subunit Length = 262 Score = 323 bits (827), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 162/238 (68%), Positives = 195/238 (81%) Query: 5 FDISYVFXXXXXXXXXXXXXXXIVGFSLLAGIVVGFLVALPRLYKVPVLKTFAEIYISFF 64 FDI+YVF IV ++ G++VGFLVALPRLY VPVL+ + +Y+SFF Sbjct: 5 FDINYVFDFIPKLLSTLNITLLIVAGAIGLGLLVGFLVALPRLYNVPVLRNVSMVYVSFF 64 Query: 65 RGTPILIQLFLFYYGLPEILKLVHVDVTRTPVLFFVILTYGLHTGAFMSEMIRASVTAVD 124 RGTP+LIQLFLFYYGLPEILKLV +D+++ PVL+FVILT+GL+ GA++SE IRA+V AV+ Sbjct: 65 RGTPVLIQLFLFYYGLPEILKLVSIDISKLPVLYFVILTFGLNVGAYVSETIRAAVLAVN 124 Query: 125 RGQVEAAYAAGMTSFQAFSRIVLPQALGIAVPVFSNLVIALLKDTSLAFTLGVMEMTGKA 184 RGQVEAAYA GMT +QAF+RIVLPQA+GIAVPVF+NLVIA+LKDTSLAFTLGVMEMTGKA Sbjct: 125 RGQVEAAYAVGMTGYQAFTRIVLPQAVGIAVPVFTNLVIAMLKDTSLAFTLGVMEMTGKA 184 Query: 185 QTLGSISQHFIETYIALALIYLVISFTLEKLLLVAERRLLRHEVPGSPERKTFSLQKH 242 QTLGS+SQHFIETYIALALIYLV+S LE+L+L+AERRL RH S E+ F +K Sbjct: 185 QTLGSLSQHFIETYIALALIYLVMSIVLERLMLLAERRLSRHLRRDSNEKNRFFSRKR 242 >Q71X81.1 Q71X81_LISMF Amino acid ABC transporter, permease protein Length = 238 Score = 202 bits (513), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 98/201 (48%), Positives = 145/201 (72%) Query: 27 IVGFSLLAGIVVGFLVALPRLYKVPVLKTFAEIYISFFRGTPILIQLFLFYYGLPEILKL 86 I+ SL+ G ++G L++LPR+YK+PVL A +YISFFRGTPI++QLF+ +YG+P + + Sbjct: 27 ILALSLIFGFILGVLLSLPRIYKIPVLDQLARVYISFFRGTPIMVQLFIVFYGIPALSSI 86 Query: 87 VHVDVTRTPVLFFVILTYGLHTGAFMSEMIRASVTAVDRGQVEAAYAAGMTSFQAFSRIV 146 V +D+++ L+ I TY L + A ++E+IRA V +VD GQ EAAY+ G++S Q F RI+ Sbjct: 87 VGIDLSQMDPLYAAIATYALSSAATIAEVIRAGVNSVDAGQAEAAYSIGLSSRQTFLRII 146 Query: 147 LPQALGIAVPVFSNLVIALLKDTSLAFTLGVMEMTGKAQTLGSISQHFIETYIALALIYL 206 LPQAL A+P F NLVI LKDTSLAF++GVM+M+G+ QTL ++S H +E YI+L++IY Sbjct: 147 LPQALYQALPNFGNLVIGYLKDTSLAFSIGVMDMSGRGQTLITLSNHALEVYISLSIIYY 206 Query: 207 VISFTLEKLLLVAERRLLRHE 227 + + LE E+R+ + Sbjct: 207 LTAVLLEYSFKWIEKRVKKEN 227 >Q4EJL1.1 Q4EJL1_LISMO Amino acid ABC transporter, permease protein Length = 238 Score = 202 bits (513), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 98/201 (48%), Positives = 145/201 (72%) Query: 27 IVGFSLLAGIVVGFLVALPRLYKVPVLKTFAEIYISFFRGTPILIQLFLFYYGLPEILKL 86 I+ SL+ G ++G L++LPR+YK+PVL A +YISFFRGTPI++QLF+ +YG+P + + Sbjct: 27 ILALSLIFGFILGVLLSLPRIYKIPVLDQLARVYISFFRGTPIMVQLFIVFYGIPALSSI 86 Query: 87 VHVDVTRTPVLFFVILTYGLHTGAFMSEMIRASVTAVDRGQVEAAYAAGMTSFQAFSRIV 146 V +D+++ L+ I TY L + A ++E+IRA V +VD GQ EAAY+ G++S Q F RI+ Sbjct: 87 VGIDLSQMDPLYAAIATYALSSAATIAEVIRAGVNSVDAGQAEAAYSIGLSSRQTFLRII 146 Query: 147 LPQALGIAVPVFSNLVIALLKDTSLAFTLGVMEMTGKAQTLGSISQHFIETYIALALIYL 206 LPQAL A+P F NLVI LKDTSLAF++GVM+M+G+ QTL ++S H +E YI+L++IY Sbjct: 147 LPQALYQALPNFGNLVIGYLKDTSLAFSIGVMDMSGRGQTLITLSNHALEVYISLSIIYY 206 Query: 207 VISFTLEKLLLVAERRLLRHE 227 + + LE E+R+ + Sbjct: 207 LTAVLLEYSFKWIEKRVKKEN 227 >Q8Y4T4.1 Q8Y4T4_LISMO Lmo2348 protein Length = 238 Score = 202 bits (513), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 98/201 (48%), Positives = 145/201 (72%) Query: 27 IVGFSLLAGIVVGFLVALPRLYKVPVLKTFAEIYISFFRGTPILIQLFLFYYGLPEILKL 86 I+ SL+ G ++G L++LPR+YKVP+L FA +YISFFRGTPI++QLF+ +YG+P + + Sbjct: 27 ILALSLIFGFILGVLLSLPRIYKVPILDQFARVYISFFRGTPIMVQLFIVFYGIPALSSV 86 Query: 87 VHVDVTRTPVLFFVILTYGLHTGAFMSEMIRASVTAVDRGQVEAAYAAGMTSFQAFSRIV 146 +D+++ L+ I TY L + A ++E+IRA V +VD GQ EAAY+ G++S Q F RI+ Sbjct: 87 FGIDLSQMDPLYAAIATYALSSAATIAEVIRAGVNSVDAGQAEAAYSIGLSSRQTFLRII 146 Query: 147 LPQALGIAVPVFSNLVIALLKDTSLAFTLGVMEMTGKAQTLGSISQHFIETYIALALIYL 206 LPQAL A+P F NLVI LKDTSLAF++GVM+M+G+ QTL ++S H +E YI+L++IY Sbjct: 147 LPQALYQALPNFGNLVIGYLKDTSLAFSIGVMDMSGRGQTLITLSNHALEVYISLSIIYY 206 Query: 207 VISFTLEKLLLVAERRLLRHE 227 + + LE E+R+ + Sbjct: 207 LTAVLLEYSFKWIEKRVKKEN 227 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.144 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,349,178,179 Number of extensions: 52147500 Number of successful extensions: 223949 Number of sequences better than 1.0e-05: 7685 Number of HSP's gapped: 216742 Number of HSP's successfully gapped: 7696 Length of query: 260 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 127 Effective length of database: 1,807,701,208 Effective search space: 229578053416 Effective search space used: 229578053416 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)