BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0470.0035.p (169 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D6E4.1 B1D6E4_9BACL Polar amino acid ABC transporter, inner me... 229 4e-59 B3KHQ0.1 B3KHQ0_9BACI Polar amino acid ABC transporter, inner me... 227 2e-58 B8DF27.1 B8DF27_LISMH L-cystine transport system permease protei... 135 1e-30 C1KXN9.1 C1KXN9_LISMC Putative amino acid ABC transporter (Perme... 134 3e-30 B1HWB5.1 B1HWB5_LYSSC Probable amino-acid ABC transporter permea... 134 4e-30 >B1D6E4.1 B1D6E4_9BACL Polar amino acid ABC transporter, inner membrane subunit Length = 236 Score = 229 bits (585), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 113/155 (72%), Positives = 129/155 (83%) Query: 2 MKLDPSFIWTAFVQILSAIPTTLYITLVSVSXXXXXXXXXXXXXXYKVPLLHPLATGYVT 61 MKLDPSFIWTAF+Q+ SA+PTTL ITLVSVS Y++P+L L++GYVT Sbjct: 1 MKLDPSFIWTAFLQLWSAVPTTLLITLVSVSVGFVIGVITALARIYRIPVLSQLSSGYVT 60 Query: 62 FIRGTPMLTHLLLIYFGLPMIIDGLAAHFGWGFRSVSIPMIGFAYIAFSITAGAYMSEVV 121 FIRGTPMLTHLLLIYFGLPM++DGL+A F G+ S IPMIGFAYI+FSITAGAY+SEVV Sbjct: 61 FIRGTPMLTHLLLIYFGLPMLVDGLSAQFDLGWNSAKIPMIGFAYISFSITAGAYLSEVV 120 Query: 122 RSGLLAVDRGQMEAAHAVGMTTSQALRRIVFPQAL 156 RSGLLAVDRGQMEAA ++GMTT QALRRIVFPQAL Sbjct: 121 RSGLLAVDRGQMEAARSIGMTTPQALRRIVFPQAL 155 >B3KHQ0.1 B3KHQ0_9BACI Polar amino acid ABC transporter, inner membrane subunit Length = 236 Score = 227 bits (579), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 111/155 (71%), Positives = 129/155 (83%) Query: 2 MKLDPSFIWTAFVQILSAIPTTLYITLVSVSXXXXXXXXXXXXXXYKVPLLHPLATGYVT 61 MK+DPSFIWTAFV +LSAIPTTL IT VSV+ YKVP+L +AT YVT Sbjct: 1 MKIDPSFIWTAFVNLLSAIPTTLLITAVSVTAGFMIGLIAAFARIYKVPVLSQIATAYVT 60 Query: 62 FIRGTPMLTHLLLIYFGLPMIIDGLAAHFGWGFRSVSIPMIGFAYIAFSITAGAYMSEVV 121 FIRGTPMLTHLLLIYFGLP+++D L+A GWGF+S SIPMI FA+I+FSITAGAYMSEV+ Sbjct: 61 FIRGTPMLTHLLLIYFGLPVLVDALSAQMGWGFKSSSIPMIWFAFISFSITAGAYMSEVI 120 Query: 122 RSGLLAVDRGQMEAAHAVGMTTSQALRRIVFPQAL 156 RSGLLAV+RGQ+EAA+++GMTT QALRRIVFPQAL Sbjct: 121 RSGLLAVNRGQLEAAYSIGMTTWQALRRIVFPQAL 155 >B8DF27.1 B8DF27_LISMH L-cystine transport system permease protein TcyM Length = 236 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 69/155 (44%), Positives = 98/155 (63%) Query: 1 MMKLDPSFIWTAFVQILSAIPTTLYITLVSVSXXXXXXXXXXXXXXYKVPLLHPLATGYV 60 MM LD FI TA + +L IP TL +T + Y V L P+A YV Sbjct: 1 MMPLDVPFIGTAVMAMLKTIPLTLAMTFFPILFGFIIAIGLTLIRMYHVRFLEPIAKFYV 60 Query: 61 TFIRGTPMLTHLLLIYFGLPMIIDGLAAHFGWGFRSVSIPMIGFAYIAFSITAGAYMSEV 120 +F R TP + H++LIY G+P+++D L+ FG G + IP++ F IA S TAGAY++E+ Sbjct: 61 SFFRSTPAILHIMLIYLGIPLLVDFLSKSFGLGISANKIPVVVFVIIALSFTAGAYLTEI 120 Query: 121 VRSGLLAVDRGQMEAAHAVGMTTSQALRRIVFPQA 155 +RSG++AVD GQMEAA++VG T QA+R+++ PQA Sbjct: 121 LRSGIMAVDIGQMEAAYSVGYTHGQAIRKVLLPQA 155 >C1KXN9.1 C1KXN9_LISMC Putative amino acid ABC transporter (Permease) Length = 235 Score = 134 bits (337), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 68/154 (44%), Positives = 98/154 (63%) Query: 2 MKLDPSFIWTAFVQILSAIPTTLYITLVSVSXXXXXXXXXXXXXXYKVPLLHPLATGYVT 61 M LD +FI TA + +L IP TL +T + Y V L P+A YV+ Sbjct: 1 MPLDVTFIGTAVMAMLKTIPLTLAMTFFPILFGFIIAIGMTLIRMYHVRFLEPIAKFYVS 60 Query: 62 FIRGTPMLTHLLLIYFGLPMIIDGLAAHFGWGFRSVSIPMIGFAYIAFSITAGAYMSEVV 121 F R TP + H++LIY G+P+++D L+ FG G + IP++ F IA S TAGAY++E++ Sbjct: 61 FFRSTPAILHIMLIYLGIPLLVDFLSKSFGLGISANKIPVVIFVIIALSFTAGAYLTEIL 120 Query: 122 RSGLLAVDRGQMEAAHAVGMTTSQALRRIVFPQA 155 RSG++AVD GQMEAA++VG T QA+R+++ PQA Sbjct: 121 RSGIIAVDIGQMEAAYSVGYTHGQAIRKVLLPQA 154 >B1HWB5.1 B1HWB5_LYSSC Probable amino-acid ABC transporter permease protein Length = 235 Score = 134 bits (336), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 65/155 (41%), Positives = 98/155 (63%) Query: 2 MKLDPSFIWTAFVQILSAIPTTLYITLVSVSXXXXXXXXXXXXXXYKVPLLHPLATGYVT 61 M +D F+ A +I IP TL++T V ++ L P YV+ Sbjct: 1 MTIDIVFVMEALREISKVIPLTLFMTFTPVFLGIVIGIMVAFVRIKQIKFLTPFLNFYVS 60 Query: 62 FIRGTPMLTHLLLIYFGLPMIIDGLAAHFGWGFRSVSIPMIGFAYIAFSITAGAYMSEVV 121 F RGTP++ H++L+ FGLPM++DG+ F F+S SIP++ F +AF+ +AGAY SE++ Sbjct: 61 FFRGTPIIMHIMLVDFGLPMLVDGVVNTFHLSFQSSSIPILFFVILAFTFSAGAYASEII 120 Query: 122 RSGLLAVDRGQMEAAHAVGMTTSQALRRIVFPQAL 156 RSG+L+V +GQ+EAA+A+G+T +QA+RR V PQA Sbjct: 121 RSGILSVPKGQLEAAYAIGLTFTQAMRRYVLPQAF 155 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.142 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 826,439,975 Number of extensions: 28373324 Number of successful extensions: 102123 Number of sequences better than 1.0e-05: 6047 Number of HSP's gapped: 97159 Number of HSP's successfully gapped: 6054 Length of query: 169 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 44 Effective length of database: 1,883,069,328 Effective search space: 82855050432 Effective search space used: 82855050432 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 126 (53.1 bits)