BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0470.0034.p
         (71 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KHQ0.1 B3KHQ0_9BACI Polar amino acid ABC transporter, inner me...   130   3e-29
B1D6E4.1 B1D6E4_9BACL Polar amino acid ABC transporter, inner me...   124   2e-27
C0B9P9.1 C0B9P9_9FIRM Putative uncharacterized protein                 67   5e-10
B1HWB5.1 B1HWB5_LYSSC Probable amino-acid ABC transporter permea...    66   9e-10
C2BY37.1 C2BY37_LISGR Amino acid ABC superfamily ATP binding cas...    66   1e-09

>B3KHQ0.1 B3KHQ0_9BACI Polar amino acid ABC transporter, inner membrane
           subunit
          Length = 236

 Score =  130 bits (328), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/70 (90%), Positives = 66/70 (94%)

Query: 1   VIGMLHGSTLAFTVSVVDINAQAQIVASTNWKFFEAYLAAALIFWGLTFLIERATALIEK 60
           VIGMLHGSTLAFTVSVVDINAQAQIVASTNWKFFE+YLAAA IFWGLT LIER TA+ E+
Sbjct: 166 VIGMLHGSTLAFTVSVVDINAQAQIVASTNWKFFESYLAAAAIFWGLTLLIERLTAIFER 225

Query: 61  RINLYNRGGV 70
           RINLYNRGGV
Sbjct: 226 RINLYNRGGV 235


>B1D6E4.1 B1D6E4_9BACL Polar amino acid ABC transporter, inner membrane
           subunit
          Length = 236

 Score =  124 bits (312), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/70 (82%), Positives = 66/70 (94%)

Query: 1   VIGMLHGSTLAFTVSVVDINAQAQIVASTNWKFFEAYLAAALIFWGLTFLIERATALIEK 60
           VIGMLHGSTLAFTVSVVD+NA+AQIVASTNWKFFE+Y+AAALIFWGLT LIER T LIE+
Sbjct: 166 VIGMLHGSTLAFTVSVVDLNAKAQIVASTNWKFFESYVAAALIFWGLTILIERCTGLIER 225

Query: 61  RINLYNRGGV 70
           RI +Y++GGV
Sbjct: 226 RIRVYSKGGV 235


>C0B9P9.1 C0B9P9_9FIRM Putative uncharacterized protein
          Length = 247

 Score = 67.0 bits (162), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 49/63 (77%)

Query: 2   IGMLHGSTLAFTVSVVDINAQAQIVASTNWKFFEAYLAAALIFWGLTFLIERATALIEKR 61
           IG++ G++LAF  SVV++ A+ +I+A  N+++FE Y++ A+I+W +TF++ER  + +EK+
Sbjct: 169 IGLIKGTSLAFVCSVVEMTAEGKILAGRNYRYFEVYISLAIIYWVITFVLERVISYLEKK 228

Query: 62  INL 64
           + +
Sbjct: 229 LRV 231


>B1HWB5.1 B1HWB5_LYSSC Probable amino-acid ABC transporter permease protein
          Length = 235

 Score = 66.2 bits (160), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 47/69 (68%)

Query: 2   IGMLHGSTLAFTVSVVDINAQAQIVASTNWKFFEAYLAAALIFWGLTFLIERATALIEKR 61
           IG LH ++LAF +S+ ++   A IVAS N KF EA++A  +I+WG++ + E  +  IEKR
Sbjct: 167 IGFLHATSLAFFLSIKELTGVANIVASVNLKFLEAFIAVGIIYWGISIITESISHRIEKR 226

Query: 62  INLYNRGGV 70
           +  Y++ G+
Sbjct: 227 VMAYSKSGL 235


>C2BY37.1 C2BY37_LISGR Amino acid ABC superfamily ATP binding cassette
           transporter, membrane protein
          Length = 254

 Score = 65.9 bits (159), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 50/69 (72%), Gaps = 1/69 (1%)

Query: 2   IGMLHGSTLAFTVSVVDINAQAQIVASTNWKFFEAYLAAALIFWGLTFLIERATALIEKR 61
           IG LH +++A  V+V +I   A IVAS N+ F +A++AAA+I+W LT +IE   AL+EK+
Sbjct: 186 IGFLHTTSIAAIVAVPEITGTATIVASDNYAFLDAFIAAAIIYWLLTMIIEAIHALLEKK 245

Query: 62  INLYNRGGV 70
           + +Y +GGV
Sbjct: 246 LTVY-QGGV 253


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.328    0.139    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 364,979,701
Number of extensions: 9848766
Number of successful extensions: 33163
Number of sequences better than 1.0e-05: 171
Number of HSP's gapped: 33181
Number of HSP's successfully gapped: 171
Length of query: 71
Length of database: 3,060,696,203
Length adjustment: 42
Effective length of query: 29
Effective length of database: 2,665,013,573
Effective search space: 77285393617
Effective search space used: 77285393617
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)