BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0470.0033.p (250 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KHQ1.1 B3KHQ1_9BACI ABC transporter related 441 e-122 B1D6E3.1 B1D6E3_9BACL ABC transporter related 416 e-114 A5MYY5.1 A5MYY5_CLOK5 Putative uncharacterized protein 347 4e-94 B9E2Y9.1 B9E2Y9_CLOK1 Putative uncharacterized protein 347 4e-94 B1HNR5.1 B1HNR5_LYSSC Probable amino-acid ABC transporter ATP-bi... 347 4e-94 >B3KHQ1.1 B3KHQ1_9BACI ABC transporter related Length = 250 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 212/250 (84%), Positives = 235/250 (94%) Query: 1 MIELKQISKSFGRHQVLNHIDLTVAKGEVVVILGPSGSGKTTLLRCVNYLEKPSGGEIAI 60 MI+L ISKS+G++ VL IDLT+ KGEVVVILGPSGSGKTTLLRCVNYLEKP+GGEIAI Sbjct: 1 MIQLTDISKSYGKNAVLKSIDLTINKGEVVVILGPSGSGKTTLLRCVNYLEKPNGGEIAI 60 Query: 61 GDFKLDCRHARKKDIHQLRQRTAMVFQQYNLFRHKTALENVMEGLLIVKKLPKEEARKKS 120 GD+++ C+ A KK+IH+LRQR+AMVFQQYNLF+HKTA+ENVMEGL++VKK+PK EAR KS Sbjct: 61 GDYRVQCKRATKKEIHELRQRSAMVFQQYNLFKHKTAIENVMEGLVVVKKMPKAEARLKS 120 Query: 121 IALLEKVGLGAKLDAYPSQLSGGQQQRVGIARALALEPEVILFDEPTSALDPELVGEVLA 180 IALLEKVGL KLDAYPSQLSGGQQQRVGIARALALEPEVILFDEPTSALDPELVGEVLA Sbjct: 121 IALLEKVGLADKLDAYPSQLSGGQQQRVGIARALALEPEVILFDEPTSALDPELVGEVLA 180 Query: 181 VIRKIAKEGITMIVVTHEMGFARDVANHVVFMDGGVIVEEGTPTEVFNHPREERTKQFLK 240 VIRKIAKEGITMIVVTHEMGFARDVANHVVFMD GVIVE+G P+++F+HPREERTKQFLK Sbjct: 181 VIRKIAKEGITMIVVTHEMGFARDVANHVVFMDEGVIVEQGPPSDLFHHPREERTKQFLK 240 Query: 241 RITPELNYSI 250 RITPELNYSI Sbjct: 241 RITPELNYSI 250 >B1D6E3.1 B1D6E3_9BACL ABC transporter related Length = 250 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 203/250 (81%), Positives = 225/250 (90%) Query: 1 MIELKQISKSFGRHQVLNHIDLTVAKGEVVVILGPSGSGKTTLLRCVNYLEKPSGGEIAI 60 MI+L I KSFGR +VL IDLTV KGEVV ILGPSGSGKTTLLRC+NYLEKP+ GEI I Sbjct: 1 MIKLSGIHKSFGRQEVLKGIDLTVNKGEVVAILGPSGSGKTTLLRCINYLEKPNEGEIRI 60 Query: 61 GDFKLDCRHARKKDIHQLRQRTAMVFQQYNLFRHKTALENVMEGLLIVKKLPKEEARKKS 120 GDF L+ +HA KKDI+ LRQR+AMVFQQYNLF HKTALENV+EGL++VKK+ KEEARK+ Sbjct: 61 GDFALNAKHAGKKDIYSLRQRSAMVFQQYNLFSHKTALENVIEGLIVVKKIGKEEARKRG 120 Query: 121 IALLEKVGLGAKLDAYPSQLSGGQQQRVGIARALALEPEVILFDEPTSALDPELVGEVLA 180 I LLEKVGLGAKLDAYPSQLSGGQQQRVGIARALALEPEVILFDEPTSALDPELVGEVL Sbjct: 121 IELLEKVGLGAKLDAYPSQLSGGQQQRVGIARALALEPEVILFDEPTSALDPELVGEVLG 180 Query: 181 VIRKIAKEGITMIVVTHEMGFARDVANHVVFMDGGVIVEEGTPTEVFNHPREERTKQFLK 240 VIR+IAKEGITMI+VTHEMGFA+DVANHVVFMDGGV+VEEG P E+F +P+EERTKQFLK Sbjct: 181 VIRRIAKEGITMIIVTHEMGFAQDVANHVVFMDGGVVVEEGPPAELFGNPQEERTKQFLK 240 Query: 241 RITPELNYSI 250 R + E +YSI Sbjct: 241 RFSTEPSYSI 250 >A5MYY5.1 A5MYY5_CLOK5 Putative uncharacterized protein Length = 255 Score = 347 bits (891), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 164/250 (65%), Positives = 205/250 (82%) Query: 1 MIELKQISKSFGRHQVLNHIDLTVAKGEVVVILGPSGSGKTTLLRCVNYLEKPSGGEIAI 60 M++L I KSFG+ ++L I++ V KGE+VVILGPSGSGKTTLLRC+N+LE+ G + + Sbjct: 4 MVQLNNIHKSFGKSEILKGINMNVKKGEIVVILGPSGSGKTTLLRCINFLERADLGSVTV 63 Query: 61 GDFKLDCRHARKKDIHQLRQRTAMVFQQYNLFRHKTALENVMEGLLIVKKLPKEEARKKS 120 +F++DC+ KKDI +LR +TAMVFQ YNLFR+KT LENVMEGL++VKK+PK EAR+KS Sbjct: 64 DNFEVDCKDGSKKDIRKLRCKTAMVFQLYNLFRNKTILENVMEGLVVVKKVPKAEAREKS 123 Query: 121 IALLEKVGLGAKLDAYPSQLSGGQQQRVGIARALALEPEVILFDEPTSALDPELVGEVLA 180 I LL+ VGLG KL YPSQ+SGGQQQR GIARAL L PEVILFDEPTSALDPELVGEVL Sbjct: 124 IELLQGVGLGDKLHNYPSQVSGGQQQRAGIARALILNPEVILFDEPTSALDPELVGEVLN 183 Query: 181 VIRKIAKEGITMIVVTHEMGFARDVANHVVFMDGGVIVEEGTPTEVFNHPREERTKQFLK 240 I+++AK GITM+VVTHE+ FA+++A HVVFM+ GVIVEEG P ++FN+P++ RTKQFL Sbjct: 184 TIKEVAKTGITMVVVTHEIAFAKEIATHVVFMENGVIVEEGLPGKIFNNPKKLRTKQFLS 243 Query: 241 RITPELNYSI 250 RI E S+ Sbjct: 244 RIMKEEGKSV 253 >B9E2Y9.1 B9E2Y9_CLOK1 Putative uncharacterized protein Length = 252 Score = 347 bits (891), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 164/250 (65%), Positives = 205/250 (82%) Query: 1 MIELKQISKSFGRHQVLNHIDLTVAKGEVVVILGPSGSGKTTLLRCVNYLEKPSGGEIAI 60 M++L I KSFG+ ++L I++ V KGE+VVILGPSGSGKTTLLRC+N+LE+ G + + Sbjct: 1 MVQLNNIHKSFGKSEILKGINMNVKKGEIVVILGPSGSGKTTLLRCINFLERADLGSVTV 60 Query: 61 GDFKLDCRHARKKDIHQLRQRTAMVFQQYNLFRHKTALENVMEGLLIVKKLPKEEARKKS 120 +F++DC+ KKDI +LR +TAMVFQ YNLFR+KT LENVMEGL++VKK+PK EAR+KS Sbjct: 61 DNFEVDCKDGSKKDIRKLRCKTAMVFQLYNLFRNKTILENVMEGLVVVKKVPKAEAREKS 120 Query: 121 IALLEKVGLGAKLDAYPSQLSGGQQQRVGIARALALEPEVILFDEPTSALDPELVGEVLA 180 I LL+ VGLG KL YPSQ+SGGQQQR GIARAL L PEVILFDEPTSALDPELVGEVL Sbjct: 121 IELLQGVGLGDKLHNYPSQVSGGQQQRAGIARALILNPEVILFDEPTSALDPELVGEVLN 180 Query: 181 VIRKIAKEGITMIVVTHEMGFARDVANHVVFMDGGVIVEEGTPTEVFNHPREERTKQFLK 240 I+++AK GITM+VVTHE+ FA+++A HVVFM+ GVIVEEG P ++FN+P++ RTKQFL Sbjct: 181 TIKEVAKTGITMVVVTHEIAFAKEIATHVVFMENGVIVEEGLPGKIFNNPKKLRTKQFLS 240 Query: 241 RITPELNYSI 250 RI E S+ Sbjct: 241 RIMKEEGKSV 250 >B1HNR5.1 B1HNR5_LYSSC Probable amino-acid ABC transporter ATP-binding protein Length = 251 Score = 347 bits (891), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 163/245 (66%), Positives = 201/245 (82%) Query: 1 MIELKQISKSFGRHQVLNHIDLTVAKGEVVVILGPSGSGKTTLLRCVNYLEKPSGGEIAI 60 M+E+K I KSFG +++L +DL + +G+VVVILGPSGSGKTTLLRC+N+LEK G Sbjct: 1 MLEIKNIHKSFGENEILKGVDLAIDQGDVVVILGPSGSGKTTLLRCINFLEKADQGHATF 60 Query: 61 GDFKLDCRHARKKDIHQLRQRTAMVFQQYNLFRHKTALENVMEGLLIVKKLPKEEARKKS 120 GD ++D +H +KKD+H +RQR A VFQ YNLF +KTALENV EGL+I +K+PK EA + Sbjct: 61 GDIEVDFQHVKKKDVHAIRQRVAFVFQNYNLFTNKTALENVTEGLIIGRKVPKAEAVEIG 120 Query: 121 IALLEKVGLGAKLDAYPSQLSGGQQQRVGIARALALEPEVILFDEPTSALDPELVGEVLA 180 L+KVGL K DAYPSQLSGGQQQRVGIARA+AL P++ILFDEPTSALDPELVGEVL Sbjct: 121 KKALDKVGLSEKYDAYPSQLSGGQQQRVGIARAVALNPDIILFDEPTSALDPELVGEVLQ 180 Query: 181 VIRKIAKEGITMIVVTHEMGFARDVANHVVFMDGGVIVEEGTPTEVFNHPREERTKQFLK 240 V++ IA EG TM+VVTHEMGFA+DVAN V+FMDGGV+VEEG+P ++F P+EERTK+FLK Sbjct: 181 VMKNIAAEGTTMLVVTHEMGFAKDVANRVIFMDGGVVVEEGSPHDIFVSPKEERTKRFLK 240 Query: 241 RITPE 245 R+ PE Sbjct: 241 RVIPE 245 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,450,940,947 Number of extensions: 58866293 Number of successful extensions: 590254 Number of sequences better than 1.0e-05: 99342 Number of HSP's gapped: 427294 Number of HSP's successfully gapped: 108193 Length of query: 250 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 118 Effective length of database: 1,817,122,223 Effective search space: 214420422314 Effective search space used: 214420422314 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)