BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0470.0019.p (282 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9DYV8.1 B9DYV8_CLOK1 Putative uncharacterized protein 153 2e-35 A5N5B0.1 A5N5B0_CLOK5 Transcriptional regulator 153 2e-35 A6M2D9.1 A6M2D9_CLOB8 Helix-turn-helix-domain containing protein... 148 4e-34 C2CZA7.1 C2CZA7_LACBR AraC family transcriptional regulator 148 5e-34 A7GAW8.1 A7GAW8_CLOBL Transcriptional regulator, AraC family 148 6e-34 >B9DYV8.1 B9DYV8_CLOK1 Putative uncharacterized protein Length = 286 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 138/252 (54%), Gaps = 4/252 (1%) Query: 32 DFHIHDHYEIFLFLGGQVNCFVEQYSYPLSPGNVLLFNNQEIHKIINLSPEPYERITIHF 91 +FH H+ +I +F+GG V +E SY L P ++LL NN +IHK I + YERI + Sbjct: 32 EFHYHNFDKIVIFIGGNVTYLIEGKSYKLKPWDILLINNNDIHKAIIDPDKIYERIIMWI 91 Query: 92 KAPLVYPFCTADTNLLACFQNRQTGEHNLSQMDEAQLEAFTGLAFRLIDILKHPQYGGDV 151 + + + NLL+CF+ NL ++++ ++ + F + D K G + Sbjct: 92 NLDFLIRY-NNNCNLLSCFELASKQGFNLLRLEDNWIDIIKKILFDIKDTFKSKDLGYET 150 Query: 152 LALTYLIQLLVQVNDLYSRSFSAVPSL---ISTLIQSAMAYIDHHLHLPLSLEGIAEELS 208 L ++ L+Q +V +N L+ + + I + YI+ HL LS++ ++ E Sbjct: 151 LRISLLLQFIVYINRLFLKQKNTKELYDIKYDERINDILNYINGHLDQNLSIDFLSSEFY 210 Query: 209 VDKYYLSHLFKQQTGGTLYRYVLLKKITLAKQLLTAGNSVSDTCYLSGFNDYANFIRTFK 268 V KYYL H FK+QTG T++ Y+L K++ ++ L+ G ++++ C SGF DY+NFIR FK Sbjct: 211 VSKYYLMHKFKEQTGYTIHAYILQKRLIMSNLLIKNGKNIAEACVQSGFGDYSNFIRAFK 270 Query: 269 NFTGHTPGQYRK 280 G +P +Y K Sbjct: 271 KMFGVSPNKYYK 282 >A5N5B0.1 A5N5B0_CLOK5 Transcriptional regulator Length = 286 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 138/252 (54%), Gaps = 4/252 (1%) Query: 32 DFHIHDHYEIFLFLGGQVNCFVEQYSYPLSPGNVLLFNNQEIHKIINLSPEPYERITIHF 91 +FH H+ +I +F+GG V +E SY L P ++LL NN +IHK I + YERI + Sbjct: 32 EFHYHNFDKIVIFIGGNVTYLIEGKSYKLKPWDILLINNNDIHKAIIDPDKIYERIIMWI 91 Query: 92 KAPLVYPFCTADTNLLACFQNRQTGEHNLSQMDEAQLEAFTGLAFRLIDILKHPQYGGDV 151 + + + NLL+CF+ NL ++++ ++ + F + D K G + Sbjct: 92 NLDFLIRY-NNNCNLLSCFELASKQGFNLLRLEDNWIDIIKKILFDIKDTFKSKDLGYET 150 Query: 152 LALTYLIQLLVQVNDLYSRSFSAVPSL---ISTLIQSAMAYIDHHLHLPLSLEGIAEELS 208 L ++ L+Q +V +N L+ + + I + YI+ HL LS++ ++ E Sbjct: 151 LRISLLLQFIVYINRLFLKQKNTKELYDIKYDERINDILNYINGHLDQNLSIDFLSSEFY 210 Query: 209 VDKYYLSHLFKQQTGGTLYRYVLLKKITLAKQLLTAGNSVSDTCYLSGFNDYANFIRTFK 268 V KYYL H FK+QTG T++ Y+L K++ ++ L+ G ++++ C SGF DY+NFIR FK Sbjct: 211 VSKYYLMHKFKEQTGYTIHAYILQKRLIMSNLLIKNGKNIAEACVQSGFGDYSNFIRAFK 270 Query: 269 NFTGHTPGQYRK 280 G +P +Y K Sbjct: 271 KMFGVSPNKYYK 282 >A6M2D9.1 A6M2D9_CLOB8 Helix-turn-helix-domain containing protein, AraC type Length = 291 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 145/253 (57%), Gaps = 5/253 (1%) Query: 29 PTKDFHIHDHYEIFLFLGGQVNCFVEQYSYPLSPGNVLLFNNQEIHK-IINLSPEPYERI 87 P + H HD YE +L+L G V +E SY L G+++L N +E+H+ +IN PYERI Sbjct: 30 PFQYLHNHDFYEFYLYLSGDVTYLIEGKSYNLKSGDIVLINTRELHRAVINSMKVPYERI 89 Query: 88 TIHFKAPLVYPFCTADTNLLACFQNRQTGEHNLSQMDEAQLEAFTGLAFRLIDILKHPQY 147 + ++ T +T+L CF+N + N+ + D + +L+++ + Sbjct: 90 VLWINKSFLHELSTPETDLTQCFENIEKS--NVIRADFQIQQNVRAQLSKLLELENYKGL 147 Query: 148 GGDVLALTYLIQLLVQVNDLY--SRSFSAVPSLISTLIQSAMAYIDHHLHLPLSLEGIAE 205 G D+L Y+I+L++Q+N+L +S + S+LI + YI++H++ L+++ +++ Sbjct: 148 GKDLLYKAYIIELIIQLNNLVLSHKSDFDIDVTKSSLIDGIVEYINNHINEELTIDELSK 207 Query: 206 ELSVDKYYLSHLFKQQTGGTLYRYVLLKKITLAKQLLTAGNSVSDTCYLSGFNDYANFIR 265 E + K++LS FK+ TG T++RY++ KK+ AK+L+ + ++ SGF DY+NF R Sbjct: 208 EFYLSKFHLSREFKKYTGTTIHRYIVQKKLIQAKELILKNHPINSVYKQSGFGDYSNFFR 267 Query: 266 TFKNFTGHTPGQY 278 FKN +P Q+ Sbjct: 268 AFKNEYSISPKQF 280 >C2CZA7.1 C2CZA7_LACBR AraC family transcriptional regulator Length = 278 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 84/253 (33%), Positives = 144/253 (56%), Gaps = 9/253 (3%) Query: 33 FHIH-DHYEIFLFLGGQVNCFVEQYSYPLSPGNVLLFNNQEIHKIINLSPEPYERITIHF 91 FH H +HYE++LFL G + +YP+ G ++ N H+ + YERI ++ Sbjct: 30 FHQHSNHYELYLFLAGNATFWTRASAYPMKRGYLVAIPNGHWHRAVTNDDSLYERIFLNI 89 Query: 92 KAPLVYPFCTADTNLLACFQNRQTGEHNLSQMDEAQLEAFTGLAFRLIDILKHP-QYGGD 150 + LV F T DT+L CF+ ++ E N+ +++E L F L +LI +L P +G D Sbjct: 90 RTNLVKDFSTFDTDLSTCFKVDKSKEINILKLNETDLSEFVSLCDKLIAVLDQPTAFGND 149 Query: 151 VLALTYLIQLLV---QVNDLYSRSFSAVPSLISTLIQSAMAYIDHHLHLPLSLEGIAEEL 207 + L +L+ QV+++ ++ + +P+L+ +I+ +ID +L LSL I++ Sbjct: 150 IRERILLSDILLLINQVDNITNQPQNIIPALLQNMIR----FIDTNLANDLSLSAISQHF 205 Query: 208 SVDKYYLSHLFKQQTGGTLYRYVLLKKITLAKQLLTAGNSVSDTCYLSGFNDYANFIRTF 267 +++ YL+ FK+ G ++++Y+ +I AK LL AG SV+D C GF +Y+NFIR F Sbjct: 206 YLNQSYLNRYFKRYMGLSIHKYISESRINQAKILLKAGKSVTDACNQCGFGNYSNFIRAF 265 Query: 268 KNFTGHTPGQYRK 280 + G +PG+Y+K Sbjct: 266 TRYVGISPGKYKK 278 >A7GAW8.1 A7GAW8_CLOBL Transcriptional regulator, AraC family Length = 289 Score = 148 bits (373), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 135/252 (53%), Gaps = 3/252 (1%) Query: 32 DFHIHDHYEIFLFLGGQVNCFVEQYSYPLSPGNVLLFNNQEIHKIINLSPEPYERITIHF 91 + H HD +I +F+ G V+ +E +Y L P ++L ++ ++HK+I + EPYERI I Sbjct: 33 ELHYHDFNKIIVFMSGNVSYLIEGKAYKLKPWDILFVSSNDLHKVIINNDEPYERIIIWV 92 Query: 92 KAPLVYPFCTADTNLLACFQNRQTGEHNLSQMDEAQLEAFTGLAFRLIDILKHPQYGGDV 151 + + + NLL CFQ + NL +M+E + F L K ++G V Sbjct: 93 NSKFLEMHNRNNNNLLTCFQLSSKHKINLFRMEEHNISLIKHTLFSLKSATKDKEFGNIV 152 Query: 152 LALTYLIQLLVQVNDLYSRSFSAVPSL---ISTLIQSAMAYIDHHLHLPLSLEGIAEELS 208 L + IQL+V +N L+ S + + I+ + YI +L LS+ ++ + Sbjct: 153 LKNSLFIQLMVYLNRLFMNSNNHIGKKDIEYDKQIEEIINYIKENLQEDLSINTLSSKFF 212 Query: 209 VDKYYLSHLFKQQTGGTLYRYVLLKKITLAKQLLTAGNSVSDTCYLSGFNDYANFIRTFK 268 ++KYYL H FK QTG TL++Y+ K++ +K L+ G+ +++ SGF DY++FIR FK Sbjct: 213 INKYYLMHKFKSQTGYTLHKYIQQKRLAFSKSLIIKGHKITEIYLKSGFGDYSSFIRAFK 272 Query: 269 NFTGHTPGQYRK 280 G +P Y K Sbjct: 273 KAYGISPKDYYK 284 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.139 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,764,919,503 Number of extensions: 72965134 Number of successful extensions: 169798 Number of sequences better than 1.0e-05: 2348 Number of HSP's gapped: 173323 Number of HSP's successfully gapped: 2349 Length of query: 282 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 148 Effective length of database: 1,798,280,193 Effective search space: 266145468564 Effective search space used: 266145468564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)