BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0470.0017.p (604 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KA99.1 B3KA99_9BACI Putative uncharacterized protein 551 e-155 B1DBI3.1 B1DBI3_9BACL Putative uncharacterized protein 445 e-123 C4DRD0.1 C4DRD0_9ACTO Putative uncharacterized protein 282 9e-74 C1QQ35.1 C1QQ35_9ACTO Putative uncharacterized protein 246 5e-63 C0A4T3.1 C0A4T3_9BACT Putative uncharacterized protein 214 3e-53 >B3KA99.1 B3KA99_9BACI Putative uncharacterized protein Length = 676 Score = 551 bits (1421), Expect = e-155, Method: Compositional matrix adjust. Identities = 283/550 (51%), Positives = 352/550 (64%), Gaps = 9/550 (1%) Query: 1 MNQ-QELLDIIRAAGPLQVSHYYPQGDQDAFWKRAAESGEWKEMISEIRAEGLRLEALDI 59 MN+ Q+L I+ P + YY GDQ +FW+ +S ++++ ISEIR EG RL ++ Sbjct: 1 MNRIQKLTTIVNGMAPADLRMYYQSGDQRSFWEGIRQSEDYEQDISEIREEGERLLSVPN 60 Query: 60 PELKYSLFTAFARTGSXXXXXXXXXXXXXXXNTYAVLVLLEPENPGYLRGLEDILWSICG 119 P L Y LFT FAR G+ NT+A+L LLEP+ Y L++++WSIC Sbjct: 61 PPLTYDLFTRFARQGTRLDYEKVYFERRRRLNTFALLTLLEPDKEAYRIALQEMIWSICD 120 Query: 120 EYTWCVPAHLPPDFAVTEIGRFIDLFSAETGFTLSEIXXXXXXXXXXXXXXXISAEVERR 179 EYTWC+PAHL + + I IDLFSAETGFTLSEI I EVE R Sbjct: 121 EYTWCLPAHLNAE-SPGGIKGTIDLFSAETGFTLSEIRVLLRDHLPPLLISRIEEEVEER 179 Query: 180 IFRPFLEDGPYHWETATHNWXXXXXXXXXXXXMLALDDPAQLSRILHRTERCMHFYLEGF 239 +F PFL + WETATHNW +L ++ L+++L +TERCM +YL+GF Sbjct: 180 LFTPFLSH-EHGWETATHNWSAVCAGSIGSAALLLMESGEFLAKVLLKTERCMDYYLQGF 238 Query: 240 GEDGACAEGLGYWNYGFGYFTYYSDLLRARSGGKLDWFQCDKVRSIAAFQQKCFIGGSLV 299 G DGAC EGLGYWNYGFGYF YY+DLLR R+ G++DWF+ +KV IA FQQK F+GG V Sbjct: 239 GPDGACLEGLGYWNYGFGYFVYYADLLRKRTRGEMDWFRAEKVGRIALFQQKGFLGGKAV 298 Query: 300 ANFSDSTPRVRVHMGLSHYLAAEYSGVEPPPAQLRAPYTEDHCSRWAPALRNLIWTRQGR 359 NFSDS P RVH+GLSHYLA Y+ E PP LR+ Y +DHCSRWAPALRNLIW Sbjct: 299 VNFSDSQPESRVHIGLSHYLAGLYADFESPPQSLRSAYGDDHCSRWAPALRNLIWRNPLL 358 Query: 360 GAQEWDAASFYLPDAAWIVARHGSPGKVFGFAAKGGHNDEPHNHNDLGHFILAGGGEVYA 419 +W AS+YLPDA W+++R G+V+ FAAKGG N EPHNHNDLGHFIL G GE + Sbjct: 359 AGSDWGEASYYLPDAQWLISRSSHGGEVYAFAAKGGSNGEPHNHNDLGHFILYGAGEAWC 418 Query: 420 ADLGSGEYTADYFGKGRYRYDCNGSQGHSVPVISGRYQSAGPEYAAAVLHAAAGTDRDEL 479 +DLG GEYTA+YFG+GRY YDCNGSQGHSVP+I G +Q GP+ AA +L A G D L Sbjct: 419 SDLGCGEYTAEYFGEGRYGYDCNGSQGHSVPIIDGHFQQEGPDSAAVILEAVTGEAVDRL 478 Query: 480 KLELSKAYDTEGLKSLIRSLVWHKEEL-PRLELCDEYLHEGAPESWTERFVTWRQPELLR 538 LEL+ AY L+S R+L W+KE L P+L L D + P S ER VT +PEL Sbjct: 479 ALELTSAYRVPALQSFTRTLEWNKEGLRPKLTLSDRFTFNSPPGSLVERIVTRIRPEL-- 536 Query: 539 TGIVLLPGSE 548 VL+ G E Sbjct: 537 ---VLMDGRE 543 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 37/53 (69%) Query: 551 GVEVHYDDKLVEPEITQREYRDHYGRETVWHTLDFHVLRPGSEGRLAFTFQFL 603 G+ +HYD++LV+PE+T +RDH+G+E W+ +DF+V G + F FQF+ Sbjct: 624 GLLIHYDNELVQPELTSHVFRDHFGKEAAWYAVDFNVKASGLHANIEFRFQFI 676 >B1DBI3.1 B1DBI3_9BACL Putative uncharacterized protein Length = 613 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 251/604 (41%), Positives = 338/604 (55%), Gaps = 12/604 (1%) Query: 3 QQELLDIIRAAGPLQVSHYYPQGDQDAFWKRAAESGEWKEMISEIRAEGLRLEALDIPEL 62 Q+ELL+ P S Y W+ AES + +MI EIRAEG RL IP L Sbjct: 8 QKELLERWLIDQPAAASDVYTYSGSKVDWRGMAESQAYSDMIGEIRAEGERLLDRPIPVL 67 Query: 63 KYSLFTAFARTGSXXXXXXXXXXXXXXXNTYAVLVLLEPENPGYLRGLEDILWSICGEYT 122 + F ++G+ ++A+L L P++ Y + L D + ++ E T Sbjct: 68 TRETYDLFEKSGNRLIYEGLYFERRSRLTSFALLHCLFPDSTEYRQALIDTIQAVLEEMT 127 Query: 123 WCVPAHLPPDFAVTEIGRFIDLFSAETGFTLSEIXXXXXXXXXXXXXXXISAEVERRIFR 182 WC+PAH+ + + R IDLF++ETGF L+EI I E+E RIF Sbjct: 128 WCLPAHMRGN----SVDRHIDLFASETGFALAEILTITEQSLPLALREAIGTEIELRIFT 183 Query: 183 PFLEDG--PYHWETATHNWXXXXXXXXXXXXMLALDDPAQLSRILHRTERCMHFYLEGFG 240 P+L+D PYHWE A HNW +L D + + ILHR M+ YL GFG Sbjct: 184 PYLDDRYPPYHWEAADHNWAAVCAGSIGATAILLGVDKERRAVILHRAIGTMNHYLSGFG 243 Query: 241 EDGACAEGLGYWNYGFGYFTYYSDLLRARSGGKLDWFQCDKVRSIAAFQQKCFIGGSLVA 300 EDGACAEG GYWNYGFGYF Y++DLL+ +GG D VR+IA FQQK ++ G+ A Sbjct: 244 EDGACAEGPGYWNYGFGYFVYFADLLKRATGGNADLLDSAHVRTIAGFQQKAYLVGNRPA 303 Query: 301 NFSDSTPRVRVHMGLSHYLAAEYSGVEPPPAQLRAPYTEDHCSRWAPALRNLIWTR-QGR 359 NFSD++ V ++GLS YLA P +RA +T+DHCSR+A ALRNL+W R + Sbjct: 304 NFSDASDHVSANIGLSDYLAFHVEEASFAPLSIRAGFTDDHCSRFAHALRNLLWFRPEAP 363 Query: 360 GAQEWDAASFYLPDAAWIVARHGSPGKVFGFAAKGGHNDEPHNHNDLGHFIL-AGGGEVY 418 +W + S+YL DA W+++R + FGFAAKGGHNDEPHNHND+GHFIL A G + Sbjct: 364 RQSDWPSGSWYLADAQWLISRVNNACGSFGFAAKGGHNDEPHNHNDVGHFILIAEGDPAF 423 Query: 419 AADLGSGEYTADYFGKGRYRYDCNGSQGHSVPVISGRYQSAGPEYAAAVLHAAAGTDRDE 478 A DLGSGEYTA YFG+GRY YDC G+QGHS+P+++G+ Q+ G E A+V G D Sbjct: 424 AVDLGSGEYTAQYFGEGRYEYDCTGAQGHSLPIVNGQLQAVGAESKASVEWVEQGELEDR 483 Query: 479 LKLELSKAYDTEGLKSLIRSLVWHKEELPRLELCDEYLHEGAPESWTERFVTWRQPELLR 538 LKLEL+ Y GL +L R VW K LP LEL D + TE V+ P + Sbjct: 484 LKLELAACYPGSGLATLEREFVWRKTGLPELELTDSFRFNQQGSVITEVIVSKCPPYVQS 543 Query: 539 TGIVLLPGSEGGGVEVHYDDKLVEPEITQREYRDHYGRETVWHTLDFHVLRPGSEGRLAF 598 G ++L GS V + Y+ + ++ I +R Y +H G+E ++ + L E L Sbjct: 544 EGQIVLKGSR-HSVLLSYEPQSLDVSIVERVYSNHSGQEEGYYRI---YLISKDEASLEK 599 Query: 599 TFQF 602 TF+ Sbjct: 600 TFKL 603 >C4DRD0.1 C4DRD0_9ACTO Putative uncharacterized protein Length = 581 Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 201/553 (36%), Positives = 270/553 (48%), Gaps = 21/553 (3%) Query: 32 KRAAESGEWKEMISEIRAEGLRLEALDIPELKYSLFTAFARTGSXXXXXXXXXXXXXXXN 91 + AA GE ++ E+R + R + L PEL Y LF + G N Sbjct: 27 RAAATRGELAGLLGELREDAQRSDPL--PELPYRLFRTYVNDGDRYRYESRYFERRRRLN 84 Query: 92 TYAVLVLLEPENPGYLRGLEDILWSICGEYTWCVPAHLPPDFAV-TEIGRFIDLFSAETG 150 + AV+ L++ R L DILW+IC EYTW VPAHL + + + R +DLF+AET Sbjct: 85 SAAVVALVDGGAESLER-LSDILWTICDEYTWAVPAHLRFNTMLGPDPDRCVDLFAAETA 143 Query: 151 FTLSEIXXXXXXXXXXXXXXXISAEVERRIFRPFLEDGPYHW-ETATHNWXXXXXXXXXX 209 L+EI + EV RR+ PFL+D W ET+T+NW Sbjct: 144 HALAEIVTMLGEELEEPVRYRVRREVRRRVLDPFLDDPRSRWWETSTNNWAAVCAGSIGM 203 Query: 210 XXMLALDDPAQLSRILHRTERCMHFYLEGFGEDGACAEGLGYWNYGFGYFTYYSDLLRAR 269 + DP +L+ +L R +R M +L GF DG CAEG+ YW YG+GYFTYY++ LR R Sbjct: 204 AGLALEADPLRLAALLDRVQRSMASFLSGFAADGGCAEGMDYWVYGYGYFTYYAEALRDR 263 Query: 270 SGGKLDWFQCDKVRSIAAFQQKCFIGGSLVANFSDSTPRVRVHMGLSHYLAAEYSGVEPP 329 +G L +IA F GG +FSD V GL L+ V P Sbjct: 264 TGLDL----LSGTGNIAGFPAAVDFGGGRCVSFSDGKDHVVPPTGLMSRLSQRLD-VPLP 318 Query: 330 PAQLRAPYTEDHCSRWAPALRNLIWTRQGRGAQEWDAASFYLPDAAWIVARHGSPGKVFG 389 Q + + +DHC RWA R L WT + +LPD AW++ R G Sbjct: 319 HIQRLSSFDDDHCYRWAHLTRTLAWTDTSVIGRPAPRGIAWLPDLAWVIDRFDVDGVAVT 378 Query: 390 FAAKGGHNDEPHNHNDLGHFILAGGGEVYAADLGSGEYTADYFGKGRYRYDCNGSQGHSV 449 AAKGGHNDEPHNH DLG FILA GE AD+GSG Y ADYFG RYR ++GHS+ Sbjct: 379 VAAKGGHNDEPHNHLDLGTFILALDGEQVLADIGSGVYDADYFGPNRYRALHPSAEGHSI 438 Query: 450 PVISGRYQSAGPEYAAAVLHAAAGTDRDELKLELSKAYDTEGLKSLIRSLVWHKEELPRL 509 P + G Q+ G + A V A + L L+LS AY G + R L W++ L Sbjct: 439 PTVGGVDQTPGRDSEATVEDFLATDAQVRLALDLSAAYGGTGFR---RVLDWNRRGT--L 493 Query: 510 ELCDEYLHEGAPESWTERFVTWRQPELLRTGIVLLPGSEGGGVEVHYDDKLVEPEITQRE 569 + D + GA S ERF++ +P + G + + G VE+ D E+ + E Sbjct: 494 VVSDCFTESGAELS--ERFISRVEPVV--DGRTVTWTARAGTVELRLDADWAA-EVDRIE 548 Query: 570 YRDHYGR-ETVWH 581 DH+G ETV+ Sbjct: 549 TLDHHGEPETVFR 561 >C1QQ35.1 C1QQ35_9ACTO Putative uncharacterized protein Length = 566 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 176/538 (32%), Positives = 251/538 (46%), Gaps = 21/538 (3%) Query: 46 EIRAEGLRLEALDIPELKYSLFTAFARTG---SXXXXXXXXXXXXXXXNTYAVLVLLEPE 102 E+R R PEL Y+L+ F TG S A+ L Sbjct: 10 EVRDVVARAAGSAAPELTYTLYRQFGDTGHRFSYEHPYFERRGRLVAAGAAAIFDLRTDS 69 Query: 103 --NPGYLRGLEDILWSICGEYTWCVPAHLPPDFAVT-EIGRFIDLFSAETGFTLSEIXXX 159 +P L L D LW IC E+TW +PAH +A ++ R +DLF+AET T++++ Sbjct: 70 AVSPEVLAVLADELWRICDEHTWALPAH--EQYARDGDMRRNVDLFAAETAHTVADLIER 127 Query: 160 XXXXXXXXXXXXISAEVERRIFRPFLEDG-PYHWETATHNWXXXXXXXXXXXXMLAL-DD 217 E+ R+F PF +D P +E T+NW + DD Sbjct: 128 FGKQLPEDVIMRCREELLDRVFIPFADDQRPMAFEKMTNNWLAVVAGGVGMAALAFFPDD 187 Query: 218 PAQLSRILHRTERCMHFYLEGFGEDGACAEGLGYWNYGFGYFTYYSDLLRARSGGKLDWF 277 +L+ IL R ++ + ++E + DG C+EG+ YW YGFGYF Y+++ R R G D Sbjct: 188 AKRLAMILKRAQKSLRRFIEYYPADGGCSEGMDYWVYGFGYFAYFAEAWRERGGP--DLL 245 Query: 278 QCDKVRSIAAFQQKCFIGGSLVANFSDSTPRVRVHMGLSHYLAAEYSGVEPPPAQLRAPY 337 K+R IAAF + G +FSD + + GL L E GV P + + Sbjct: 246 LDTKIREIAAFPARVGFGDGRFPSFSDGSETATIPTGLMARLV-ERLGVPVPRIETVPTF 304 Query: 338 TEDHCSRWAPALRNLIWTRQGRGAQEWDAASFYLPDAAWIVARHGSPGKVFGFAAKGGHN 397 D C RW +N+ WT + + YLPD AW+V G FAAKGGHN Sbjct: 305 ASDFCHRWPHLSKNIEWTTERVLNRAASPGVSYLPDLAWVVDCGGEAE----FAAKGGHN 360 Query: 398 DEPHNHNDLGHFILAGGGEVYAADLGSGEYTADYFGKGRYRYDCNGSQGHSVPVISGRYQ 457 DE HNH D+G FIL E + ADLG+GEYTADYFG RY++ ++GHS+PVI GR Q Sbjct: 361 DEFHNHLDVGQFILRAHSETFLADLGAGEYTADYFGTKRYQHVHTAAEGHSLPVIDGRGQ 420 Query: 458 SAGPEYAAAVLHAAAGTDRDELKLELSKAYDTEGLKSLIRSLVWHKEELPRLELCDEYLH 517 G ++AA V A L L+++ AY+ GL +L R W + L + D + Sbjct: 421 LPGAQHAAKVERFAETGQGAILTLDMTSAYEVPGLLALGRRFTWQRH--GSLVVVDR-VE 477 Query: 518 EGAPESWTERFVTWRQPELLRTGIVLLPGSEGGGVEVHYDDKLVEPEITQREYRDHYG 575 P + E +++ +P +L V+ G V + + PE+ E H G Sbjct: 478 TDRPMPFEELYISRIRP-VLEADRVVWEGEAARCVLTWQETLAMTPELETIETTGHRG 534 >C0A4T3.1 C0A4T3_9BACT Putative uncharacterized protein Length = 716 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 149/553 (26%), Positives = 227/553 (41%), Gaps = 46/553 (8%) Query: 19 SHYYPQGDQDAFWKRAAESGEWKEMISEIRAEGLRLEALDIPELKYSLFTAFARTGSXXX 78 +H+ P D +FW A K +I++ R + IP+L +L+ F TG Sbjct: 68 THFTPTFDDRSFWTPLATLPTAKTIITKAR----KFAREPIPDLPDALYLEFQNTGRRES 123 Query: 79 XXXXXXXXXXXXNTYAVLVLLEPENPGYLRGLEDILWSICGEYTWCVPAHLPPDFAVTEI 138 N L + +L +E L +I E TW +PA T+ Sbjct: 124 YERPFTLRSERLNALVFAAGLTNDTVAWLPPIEAELAAILDEPTWAIPAGARSRKTRTDA 183 Query: 139 GRFIDLFSAETGFTLSEIXXXXXXXXXXXXXXXISAEVERRIFRPFLEDGP------YHW 192 ++DL + +TL+ I E+ R+ P+L + W Sbjct: 184 YDYVDLAATARAWTLASADWLLGDRLQPATRARIRQEIHARVLAPWLARVRARDRRDFWW 243 Query: 193 ETATHNWXXXXXXXXXXXXMLALDDPAQLSRILHRTERCMHFYLEGFGEDGACAEGLGYW 252 + +NW + ++PA+ +R + E F+L GF +DG C EG+GYW Sbjct: 244 MSTDNNWNAVCNTGVLGTALTLTENPAERARFIAAYEALTPFFLAGFADDGFCHEGIGYW 303 Query: 253 NYGFGYFTYYSDLLRARSGGKLDWFQCDKVRSIAAFQQKCFIGGSLVANFSDSTPRVRVH 312 YGFG++ ++L+R + G +D KV IA F I + F D+ RV Sbjct: 304 VYGFGHYLIGAELIRQTTAGHVDLLAAPKVARIATFASGWEICPGIYPAFGDARMTTRVS 363 Query: 313 MGLSHYLAAEYSGVEPPPAQLRAPY-----------------TEDHCSRWAPALRNLIWT 355 LS ++A+ ++ PPPA + P +H P+ Sbjct: 364 PWLSTFVASRFA--TPPPADVALPQFRNWHSLGVQLYASLFELAEHAEHATPSSPPPAPP 421 Query: 356 RQGRGAQEWDAASFYLPDAAWIVARHGSPGKVFGFAAKGGHNDEPHNHNDLGHFILAGGG 415 GA A + PD +VAR A KGGHN +PHNHNDLG F++ G Sbjct: 422 ANNPGAL---APRNWFPDGGALVARSIPAATGLSLAIKGGHNGQPHNHNDLGSFVVVNDG 478 Query: 416 EVYAADLGSGEYTADYFGKGRYRYDCNGSQGHSVPVISGRYQSAGPEYAAAVLHAAAGTD 475 + +DLG YT D FG RY S GH VP ++G+ Q GP+ A + + Sbjct: 479 VLVMSDLGVDAYTKDTFGPRRYTSGVMNSFGHPVPRVAGQLQKTGPDARAVTVRTEFTDE 538 Query: 476 RDELKLELSKAYDTEGLKSLIRSLVWHKEELPRLELCDEYLHEGAPESWTERFVTWRQPE 535 RD +++L+ AYD LK L R+ + + RLE+ D H P+ Sbjct: 539 RDVWEMDLTSAYDVPALKQLTRTFTFTRANRGRLEIVDRVRHT--------------TPQ 584 Query: 536 LLRTGIVLLPGSE 548 T ++LLPG + Sbjct: 585 TFGTALILLPGQQ 597 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.139 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,846,786,666 Number of extensions: 167447150 Number of successful extensions: 303964 Number of sequences better than 1.0e-05: 54 Number of HSP's gapped: 303862 Number of HSP's successfully gapped: 70 Length of query: 604 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 462 Effective length of database: 1,722,912,073 Effective search space: 795985377726 Effective search space used: 795985377726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)