BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0470.0012.p (523 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B2A0Y4.1 B2A0Y4_NATTJ Putative transcriptional regulator, PucR f... 270 2e-70 B2A0W3.1 B2A0W3_NATTJ Putative transcriptional regulator, PucR f... 198 1e-48 A9KS82.1 A9KS82_CLOPH Transcriptional regulator, CdaR 166 6e-39 B8FWW7.1 B8FWW7_DESHD Putative transcriptional regulator, PucR f... 153 5e-35 Q24ZH9.1 Q24ZH9_DESHY Putative uncharacterized protein 151 2e-34 >B2A0Y4.1 B2A0Y4_NATTJ Putative transcriptional regulator, PucR family Length = 518 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 148/479 (30%), Positives = 271/479 (56%), Gaps = 5/479 (1%) Query: 33 AVLITKSLTSFAPEFIYVGKRSMLPGNAANMENASLMLINDAELPVQEDVESSPNIIEFT 92 A L+T + IYVG SM+P + +E +L++IND E +++ + +IIE Sbjct: 35 AKLVTGINMEYEKNIIYVGTASMIPQDLYQIEGINLVVINDYEDLEFDNLNTKGDIIEVD 94 Query: 93 AGEDVFEIYNQTRELFLEKAETEQAKATLLKAFAAGKGMDHIVSVAADILGNPVIVIDLS 152 ++F ++N + +F+ +++ A LL + G+G+++IV + + ILGNPVI+ D S Sbjct: 95 EKAELFTLFNDVQNIFISINRYQESSAALLNSLIRGRGLNYIVKIGSQILGNPVILADSS 154 Query: 153 YKVLA-YSDSEITDPVWRDNLQKGYCSYDFIAAVQKMKSVQNGAKSGEPYEVFCSGSAA- 210 YK+LA Y+++E+ DPVW+D KGYCS++F+ ++ K ++ AKS EP V +G A Sbjct: 155 YKLLAYYAENEVIDPVWKDLTTKGYCSHNFVNLFKRQKLIEKVAKSPEPILV-KTGLAKD 213 Query: 211 -AKMVARIKIGDKPVGNLILLGTERPVHPRDRDLAAFAGEMVAAELQKNSFYRNSAHAVY 269 + + +I I DK VG+L +L ++ D ++ +++++E+QKN+ +RN +Y Sbjct: 214 IRRYLGKILIDDKIVGHLGVLEYDQNFKEEDHEITKLLCDVISSEMQKNNLFRNFKGVMY 273 Query: 270 DELIYDLLENHLSGKELVQERLRSGNIRLTGRLSVLVLDIVQYDASGKYNGYLRDRISTL 329 + LI DLL+ ++ + +++ERL+S + V+ +++ + + + YLRDRI L Sbjct: 274 ESLILDLLDKRVNDRRIMEERLKSSQWEPSDYYKVVTINVPKDNTTSHIVNYLRDRIERL 333 Query: 330 FTAERQIFYNGHIVSIRERKLKAARMDCGPDIREFLTANQIRLGISSEFSDIADCRKYYL 389 + + Y G+IV + + K + +++FL +N + G+S F+D+ YY Sbjct: 334 IPFCKSVCYEGNIVLLLDFKETDDIENIDRKLKDFLNSNNLTAGVSFTFNDLMKLGIYYN 393 Query: 390 QAVKALEIGLIAMPADPVVLYSDVQLYDILS-AHTQGDYREVCHPALLTLREYDGKHHAD 448 Q+V AL+ G P+ + +Y++LS T+ + CHPA+ + YD + D Sbjct: 394 QSVNALQFGETLDTKGPLFYFESYYIYNLLSEVSTRQNLSSYCHPAIYKIIAYDKTNGTD 453 Query: 449 LYHTLFIYLKNNRQLQRTATELFIHRNTLRYRLHQISVLIHVDLDNIDNVLKLYMSYKM 507 Y TL+ Y N + TA +L+IHRNT+ +RL ++ + ++ D+ + +L++SYK+ Sbjct: 454 YYKTLYEYFLNCNNITMTAKKLYIHRNTMAHRLEKLKEITGLNFDDGEQCFRLFLSYKI 512 >B2A0W3.1 B2A0W3_NATTJ Putative transcriptional regulator, PucR family Length = 563 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 137/508 (26%), Positives = 258/508 (50%), Gaps = 38/508 (7%) Query: 41 TSFAPEFIYVGKRSMLPGNAANMENASLMLIN--DAE-----LPVQEDVES--------S 85 T + +Y+G + L + +N +L+LI+ D E +ED +S + Sbjct: 57 TDYQEHVLYIGDINTLEQASKLPDNTNLLLISRGDGEERQEDFRFREDAQSLQRIEKTDN 116 Query: 86 PNIIEFTAGE--DVF-EIYNQTRELFLEKAETEQAKATLLKAFAAGKGMDHIVSVAADIL 142 NII + E D+ EI+N ++LF+ + A LL + G+G+ ++V + IL Sbjct: 117 TNIIIVHSKEKQDISGEIFNFIQDLFIGNYKMMNNSAELLNSLIKGRGLKYVVKIGTKIL 176 Query: 143 GNPVIVIDLSYKVLAYSDSE-ITDPVWRDNLQKGYCSYDFIAAVQKMKSVQNGAKSGEPY 201 P+++ID S+KVLA+S++ + DP+W + + GYCSY+FI V+ +++Q K+ P Sbjct: 177 NKPIVLIDSSFKVLAHSENRPVQDPLWNNYIANGYCSYEFIQTVKHNQTLQKLNKNNTPQ 236 Query: 202 EVFCSGSAAAKMVARIKIGDKPVGNLILLGTERPVHPRDRDLAAFAGEMVAAELQKNSFY 261 + C S KMV IKI DK G +I+ E D L + ++A E++K+ +Y Sbjct: 237 LITCEASQGLKMVKNIKIKDKIAGYVIIFEDEGSFSKEDSKLISQLSNVLAEEMKKHDYY 296 Query: 262 RNSAHAVYDELIYDLLENHLSGKELVQERLRSGNIRLTGRLSVLVLDIVQYDASGKYNGY 321 +NS +Y+ L+ DLL++++S ++ V+ R+++ L ++ + + Q + Y Sbjct: 297 KNSTGLMYENLLLDLLDDNISSEQTVRARVQNTPCSFGENLYLIAISLGQNLPNHYCVDY 356 Query: 322 LRDRISTLFTAERQIFYNGH---IVSIRERKLKAARMDCGPDIREFLTANQIRLGISSEF 378 R+++ T+F + I+Y + ++ + E K+ +D + FL N + +S +F Sbjct: 357 YREQVKTMFPHCKAIYYQDYLLVLLDLPEEKMGKEILD---KLINFLENNGLWAAVSDKF 413 Query: 379 SDIADCRKYYLQAVKALEIGLIAMPA------------DPVVLYSDVQLYDILSA-HTQG 425 S I + ++ +L+ LE G + + D ++ Y + YD++S + Q Sbjct: 414 SSIMEFKRQFLKVKNTLEFGQLLLKGKKDSSANMNQDTDKLLFYESYKPYDLISTFNGQT 473 Query: 426 DYREVCHPALLTLREYDGKHHADLYHTLFIYLKNNRQLQRTATELFIHRNTLRYRLHQIS 485 D + CH ++ L+ YD ++ L YL N+ + A +L+IHRNT+R R+ +I Sbjct: 474 DLMDYCHSGVIELQFYDQENGTAYLRCLQEYLNTNQNINEAAEKLYIHRNTMRNRISKII 533 Query: 486 VLIHVDLDNIDNVLKLYMSYKMTAYLDR 513 + ++L+N + L +S + YL + Sbjct: 534 DMTELNLENSQTIFHLQLSLLILEYLRK 561 >A9KS82.1 A9KS82_CLOPH Transcriptional regulator, CdaR Length = 520 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 115/441 (26%), Positives = 221/441 (50%), Gaps = 21/441 (4%) Query: 89 IEFTAGEDVFEIYNQTRELFLEKAETEQAKATLLKAFAAGKGMDH----IVSVAADILGN 144 I + + +F I+N + L ET + + + A H ++ A+ LGN Sbjct: 81 IALVSEDSLFTIFNDAKALI----ETTRKGIGIFEELTALADKTHNIEAVIDAASVRLGN 136 Query: 145 PVIVIDLSYKVLAYSDS-EITDPVWRDNLQKGYCSYDFIAAVQKMKSVQNGAKSGEPYEV 203 ++ D+++K++A S S + DP+W++N ++GYC Y+FI+ V+++KS++N +++ EV Sbjct: 137 SLLFCDMNFKIIASSTSVPVLDPLWKENTKQGYCCYEFISEVKELKSIRNASQTTAAVEV 196 Query: 204 FCSGSAAAKMVARIKIGDKPVGNLILLGTERPVHPRDRDLAAFAGEMVA---AELQKNSF 260 C S K+ +++ +G L+++ E P ++ + +++ A N F Sbjct: 197 TCIKSPYRKLSSKVFHNQTQIGFLLMIEGENNFLPYHFEMLSIISHVISYTIAYYTPNLF 256 Query: 261 YRNSAHAVYDELIYDLLENHLSGKELVQERLRSGNIRLTGRLSVLVLDIVQYDASGKYNG 320 +NS +Y EL+YD+L + ++ + RL + ++ VL + +Y Sbjct: 257 EKNS---LYHELLYDMLIG--APEKDIMPRL--AELHFPDKMLVLFIRPTKYLGLQYLKS 309 Query: 321 YLRDRISTLFTAERQIFY-NGHIVSIRERKLKAARMDCGPDIREFLTANQIRLGISSEFS 379 + + ++ NG + I ++ + ++ F IR+GIS+ F+ Sbjct: 310 SVCKNLKIQIPGTHVTYHKNGIVAVIPLKEDTEMNLMLLELLKCFSKKEHIRIGISNSFA 369 Query: 380 DIADCRKYYLQAVKALEIGLIAMPADPVVLYSDVQLYDILSAHTQGD-YREVCHPALLTL 438 I + +Y QA AL++G P V Y + Q++D+ S D CHPAL L Sbjct: 370 CIENFVSHYEQAHAALKLGHKLNPEGLVYHYQNYQIFDLFSEAKNPDKLGRFCHPALAVL 429 Query: 439 REYDGKHHADLYHTLFIYLKNNRQLQRTATELFIHRNTLRYRLHQISVLIHVDLDNIDNV 498 R+YD ++ + LY TL +++ ++ T+ LFIHRN+L YRL++I+ L VDL +I+ + Sbjct: 430 RQYDHENSSQLYKTLCVFINKGCNIKLTSESLFIHRNSLVYRLNRITELSQVDLSDINTL 489 Query: 499 LKLYMSYKMTAYLDRLKEAGE 519 L +S+ + Y ++ K + + Sbjct: 490 FLLRLSFLIDQYNEQNKSSAK 510 >B8FWW7.1 B8FWW7_DESHD Putative transcriptional regulator, PucR family Length = 421 Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 103/411 (25%), Positives = 205/411 (49%), Gaps = 14/411 (3%) Query: 113 ETEQAKATLLKAFAAGKGMDHIVSVAADILGNPVIVIDLSYKVLAYS-DSEITD-PVWRD 170 E LLK + + +V++ ++L NP ++DL VLA + +S + D PVW + Sbjct: 8 EQTSLSTRLLKTLCSDSSLQSLVAIGYELLQNPFSIMDLRANVLAITGESPVEDDPVWNE 67 Query: 171 NLQKGYCSYDFIAAVQKMKSVQNGAKSGEPYEVFCSGSAAAKMVARIKIGDKPVGNLILL 230 + S + K ++ A+S P+ + S +++ +I I K + ++I+ Sbjct: 68 TVHTEGNSLQTFSYYVDNKLIEKIAESDYPFFWSDAYSKYPRIIGKIMIDGKHIAHIIIC 127 Query: 231 GTERPVHPRDRDLAAFAGEMVAAELQKNSFYRNSAHAVYDELIYDLLENHLSGKELVQER 290 +R D D+A+ + V+ ELQKN + S ++ +YDLLE + + E+ Sbjct: 128 AHQRDFKEGDLDVASLLCQAVSIELQKNKYVIYSRELSHEAFLYDLLEGTPKNLKHMDEQ 187 Query: 291 LRSGNIRLTGRLSVLVLDIVQYDASGKYNGYLRDRISTLFTAERQIFYNGHIVSI----R 346 L+ + L G L V+ +DI +D + YL+D + + + + +N IV I Sbjct: 188 LKQLSSTLKGILCVITIDISNWDRTTSTLPYLKDELELHLSQAKGVIHNRKIVLIASFEN 247 Query: 347 ERKLKAARMDCGPDIREFLTANQIRLGISSEFSDIADCRKYYLQAVKALEIGLIAMPADP 406 + A ++ +R+F+ A + GIS F ++ + R +YL++++AL+IG + Sbjct: 248 AKHFFATELE---GLRQFILAYNLEAGISRPFYNLKELRYFYLESIEALKIGKLIHTDRS 304 Query: 407 VVLYSDVQLYDILSAHTQGD-----YREVCHPALLTLREYDGKHHADLYHTLFIYLKNNR 461 + Y D ++ ++ T+ + ++ HP ++ L +YD ++ ++ ++L+ Y+ N + Sbjct: 305 IFQYEDYVIFHLIINFTRDNEDLYSLYKLIHPGIIKLLDYDKQNKSEYAYSLYTYIFNFK 364 Query: 462 QLQRTATELFIHRNTLRYRLHQISVLIHVDLDNIDNVLKLYMSYKMTAYLD 512 +A L IHRN+ R+ +I L ++DL++ D + LY S+K+ L+ Sbjct: 365 NTTSSAASLNIHRNSFFNRMEKIEKLTNMDLNHSDTLHYLYFSFKILELLN 415 >Q24ZH9.1 Q24ZH9_DESHY Putative uncharacterized protein Length = 423 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 103/411 (25%), Positives = 204/411 (49%), Gaps = 14/411 (3%) Query: 113 ETEQAKATLLKAFAAGKGMDHIVSVAADILGNPVIVIDLSYKVLAYS-DSEITD-PVWRD 170 E LLK + + +V++ ++L NP ++DL VLA + +S + D PVW + Sbjct: 10 EQTSLSTRLLKTLCSDSSLQSLVAIGYELLQNPFSIMDLRANVLAITGESPVEDDPVWNE 69 Query: 171 NLQKGYCSYDFIAAVQKMKSVQNGAKSGEPYEVFCSGSAAAKMVARIKIGDKPVGNLILL 230 + S + K ++ A+S P+ + S +++ +I I K + ++I+ Sbjct: 70 TVHTEGNSLQTFSYYVDNKLIEKIAESDYPFFWADAYSKYPRIIGKIMIDGKHIAHIIIC 129 Query: 231 GTERPVHPRDRDLAAFAGEMVAAELQKNSFYRNSAHAVYDELIYDLLENHLSGKELVQER 290 +R D D+A+ + V+ ELQKN + S ++ +YDLLE + + E+ Sbjct: 130 AHQRDFKEGDLDVASLLCQAVSIELQKNKYVIYSRELSHEAFLYDLLEGTPKNLKHMDEQ 189 Query: 291 LRSGNIRLTGRLSVLVLDIVQYDASGKYNGYLRDRISTLFTAERQIFYNGHIVSI----R 346 L+ + L G L V+ +DI +D + YL+D + + + + +N IV I Sbjct: 190 LKQLSSTLKGILCVITIDISNWDRTTSTLPYLKDELELHLSQAKGVIHNRKIVLIASFEN 249 Query: 347 ERKLKAARMDCGPDIREFLTANQIRLGISSEFSDIADCRKYYLQAVKALEIGLIAMPADP 406 + A ++ +R+F+ A + GIS F + + R +YL++++AL+IG + Sbjct: 250 AKHFFATELE---GLRQFILAYNLEAGISRPFYILKELRYFYLESIEALKIGKLIHTDRS 306 Query: 407 VVLYSDVQLYDILSAHTQGD-----YREVCHPALLTLREYDGKHHADLYHTLFIYLKNNR 461 + Y D ++ ++ T+ + ++ HP ++ L +YD ++ ++ ++L+ Y+ N + Sbjct: 307 IFQYEDYVIFHLIINFTRDNEDLYSLYKLIHPGIIKLLDYDKQNKSEYAYSLYTYIFNFK 366 Query: 462 QLQRTATELFIHRNTLRYRLHQISVLIHVDLDNIDNVLKLYMSYKMTAYLD 512 +A L IHRN+ R+ +I L ++DL++ D + LY S+K+ L+ Sbjct: 367 NTTSSAASLNIHRNSFFNRMEKIEKLTNMDLNHSDTLHYLYFSFKILELLN 417 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,863,876,497 Number of extensions: 116037733 Number of successful extensions: 279878 Number of sequences better than 1.0e-05: 376 Number of HSP's gapped: 279742 Number of HSP's successfully gapped: 377 Length of query: 523 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 383 Effective length of database: 1,741,754,103 Effective search space: 667091821449 Effective search space used: 667091821449 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)