BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0470.0009.p (319 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFG7.1 B3KFG7_9BACI Binding-protein-dependent transport system... 560 e-158 B1D8F4.1 B1D8F4_9BACL Binding-protein-dependent transport system... 527 e-148 B3KCT1.1 B3KCT1_9BACI Binding-protein-dependent transport system... 359 2e-97 B1D8I3.1 B1D8I3_9BACL Binding-protein-dependent transport system... 350 1e-94 B1D6H5.1 B1D6H5_9BACL Binding-protein-dependent transport system... 346 2e-93 >B3KFG7.1 B3KFG7_9BACI Binding-protein-dependent transport systems inner membrane component Length = 316 Score = 560 bits (1444), Expect = e-158, Method: Compositional matrix adjust. Identities = 275/316 (87%), Positives = 294/316 (93%) Query: 4 MKAVLDNSREYVATKKKNHFLHNLKRDSXXXXXXXXXXXXXXXXKYAPIYGLVMAFQDYN 63 MKAVLD+SR+Y ATK+KN+FL+ +KRD KYAPIYGLVMAFQDYN Sbjct: 1 MKAVLDSSRKYGATKRKNNFLYYIKRDGLLYFLLLLPMAYILIFKYAPIYGLVMAFQDYN 60 Query: 64 IFEGIKGSEWVGLDVFRFIFEQDSFYRALKNTLVLNVLDLIAGFPAPILLAILLNEVRQA 123 IFEGI+GSEWVGLDVFRFIFEQDSFYRALKNTLVLNVLDLIAGFPAPILLAI+LNEVRQA Sbjct: 61 IFEGIRGSEWVGLDVFRFIFEQDSFYRALKNTLVLNVLDLIAGFPAPILLAIMLNEVRQA 120 Query: 124 AFKKVTQTVLYLPHFLSWVIIGGMVYLMFSNSGMINNFLAGFGLDKIEFLSQKTPWLITY 183 FKK+TQTVLYLPHFLSWVIIGGMVYLMFSN GMINNFL+ FGL+KIEFLS+KTPWLITY Sbjct: 121 KFKKMTQTVLYLPHFLSWVIIGGMVYLMFSNGGMINNFLSSFGLEKIEFLSRKTPWLITY 180 Query: 184 ISVGVWQNIGWGTIIYLAAITGINKELYEASDIDGCSRLRQMWHITLPGIKSTINILLIL 243 I+VGVWQNIGWGTIIYLAAITGIN+ELYEASDIDGCSRLR+MWHITLPGIKSTINILLIL Sbjct: 181 IAVGVWQNIGWGTIIYLAAITGINRELYEASDIDGCSRLRKMWHITLPGIKSTINILLIL 240 Query: 244 QIGRMVSIGFDRPFVMGNSLVNEYSDVISTFVYRVGISSGDFSQATAVGLFQSVVGLVLL 303 QIGRMVSIGFDRPFVMGNSLV++YSDVISTFVYRVGISSGDFSQATAVGLFQSVVGL+LL Sbjct: 241 QIGRMVSIGFDRPFVMGNSLVSDYSDVISTFVYRVGISSGDFSQATAVGLFQSVVGLILL 300 Query: 304 LSANFIAKKLGEDGIW 319 LSANF+AKKLGEDGIW Sbjct: 301 LSANFVAKKLGEDGIW 316 >B1D8F4.1 B1D8F4_9BACL Binding-protein-dependent transport systems inner membrane component Length = 314 Score = 527 bits (1358), Expect = e-148, Method: Compositional matrix adjust. Identities = 257/316 (81%), Positives = 282/316 (89%), Gaps = 2/316 (0%) Query: 4 MKAVLDNSREYVATKKKNHFLHNLKRDSXXXXXXXXXXXXXXXXKYAPIYGLVMAFQDYN 63 MKAVL+ ++Y + KK N FLHN+KRD KYAPIYG++MAFQDYN Sbjct: 1 MKAVLE--QDYASQKKPNKFLHNIKRDKWLYALLLLPFAYILIFKYAPIYGVIMAFQDYN 58 Query: 64 IFEGIKGSEWVGLDVFRFIFEQDSFYRALKNTLVLNVLDLIAGFPAPILLAILLNEVRQA 123 IF GIKGSEWVGLDVF+FIF+QDSFYRALKNTL LNV DLIAGFPAPI+LAILLNE+R A Sbjct: 59 IFAGIKGSEWVGLDVFQFIFQQDSFYRALKNTLALNVYDLIAGFPAPIILAILLNELRMA 118 Query: 124 AFKKVTQTVLYLPHFLSWVIIGGMVYLMFSNSGMINNFLAGFGLDKIEFLSQKTPWLITY 183 FKK+TQTVLYLPHFLSW+IIGGMVYLMFSNSGM+N FLA G KIEFLSQK PWL+TY Sbjct: 119 RFKKITQTVLYLPHFLSWIIIGGMVYLMFSNSGMVNTFLANLGFAKIEFLSQKVPWLVTY 178 Query: 184 ISVGVWQNIGWGTIIYLAAITGINKELYEASDIDGCSRLRQMWHITLPGIKSTINILLIL 243 ISVGVWQ+IGWGTIIYLAA+TGINKELYEASDIDGCSRLR++WHITLPGIKSTINILLIL Sbjct: 179 ISVGVWQHIGWGTIIYLAAMTGINKELYEASDIDGCSRLRKVWHITLPGIKSTINILLIL 238 Query: 244 QIGRMVSIGFDRPFVMGNSLVNEYSDVISTFVYRVGISSGDFSQATAVGLFQSVVGLVLL 303 QIGRMVSIGFDRPFVMGNSLV++YSDVISTFVYRVGISSGDFSQATAVGLFQSVVGL+LL Sbjct: 239 QIGRMVSIGFDRPFVMGNSLVSDYSDVISTFVYRVGISSGDFSQATAVGLFQSVVGLILL 298 Query: 304 LSANFIAKKLGEDGIW 319 ++AN+IAKKLGEDGIW Sbjct: 299 IAANYIAKKLGEDGIW 314 >B3KCT1.1 B3KCT1_9BACI Binding-protein-dependent transport systems inner membrane component Length = 300 Score = 359 bits (922), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 160/272 (58%), Positives = 223/272 (81%), Gaps = 1/272 (0%) Query: 48 KYAPIYGLVMAFQDYNIFEGIKGSEWVGLDVFRFIFEQDSFYRALKNTLVLNVLDLIAGF 107 KY P++G+ +AF+D+N F+GI GSEW+GLD FR +F+ FY+ L+NTL+LN+LDL+ F Sbjct: 28 KYGPMWGVQIAFKDFNFFQGITGSEWIGLDAFREVFQTQDFYKTLRNTLMLNLLDLVVSF 87 Query: 108 PAPILLAILLNEVRQAAFKKVTQTVLYLPHFLSWVIIGGMVYLMF-SNSGMINNFLAGFG 166 PAP++LAI+L+E+R FK+++QT+LY+PHF+SWVIIGG+VY +F + SGMINN L G Sbjct: 88 PAPLILAIMLHELRIQWFKRLSQTILYIPHFISWVIIGGIVYQVFGTQSGMINNMLMALG 147 Query: 167 LDKIEFLSQKTPWLITYISVGVWQNIGWGTIIYLAAITGINKELYEASDIDGCSRLRQMW 226 + + FL++K WLITY++ GVWQ+ GWGTI+YLAA+TGINKEL+EA+++DG R +++W Sbjct: 148 FESVPFLTEKNTWLITYLATGVWQSAGWGTILYLAALTGINKELFEAAEVDGAGRFKRIW 207 Query: 227 HITLPGIKSTINILLILQIGRMVSIGFDRPFVMGNSLVNEYSDVISTFVYRVGISSGDFS 286 HITLPG+K+TI LLI+ +G M+SIGFDRPFV+GN V +YSDV+ST+VYR G+ SG ++ Sbjct: 208 HITLPGLKTTIVTLLIINLGNMISIGFDRPFVIGNKAVMDYSDVLSTYVYRTGLESGQYT 267 Query: 287 QATAVGLFQSVVGLVLLLSANFIAKKLGEDGI 318 AT VGLFQ+VVGLV +L AN+ +KKL ++ I Sbjct: 268 LATVVGLFQAVVGLVFILGANYASKKLTDESI 299 >B1D8I3.1 B1D8I3_9BACL Binding-protein-dependent transport systems inner membrane component Length = 318 Score = 350 bits (898), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 159/272 (58%), Positives = 219/272 (80%), Gaps = 1/272 (0%) Query: 48 KYAPIYGLVMAFQDYNIFEGIKGSEWVGLDVFRFIFEQDSFYRALKNTLVLNVLDLIAGF 107 KY P+YG+++AF+D+N F+GI GSEW+GLD FR +F FY+ L+NTL+LN LDLI F Sbjct: 46 KYGPMYGILIAFKDFNFFQGINGSEWIGLDGFREVFAMPDFYKVLRNTLMLNFLDLIVSF 105 Query: 108 PAPILLAILLNEVRQAAFKKVTQTVLYLPHFLSWVIIGGMVYLMF-SNSGMINNFLAGFG 166 PAP+ LAI+L E++ FKK++QT+LY+PHF+SWVIIGG+V +F + SGMINN + G Sbjct: 106 PAPLFLAIMLYELKIGWFKKLSQTILYIPHFISWVIIGGIVLQVFGTQSGMINNIITSLG 165 Query: 167 LDKIEFLSQKTPWLITYISVGVWQNIGWGTIIYLAAITGINKELYEASDIDGCSRLRQMW 226 D I FL+ K WL+TY++VGVWQ+ GWGTIIYLAA+TGIN+EL+EA+D+DG RLR++W Sbjct: 166 FDAIPFLTDKKDWLVTYLAVGVWQSAGWGTIIYLAALTGINRELFEAADVDGAGRLRKIW 225 Query: 227 HITLPGIKSTINILLILQIGRMVSIGFDRPFVMGNSLVNEYSDVISTFVYRVGISSGDFS 286 +ITLP +K TI LLI+ +G M++IGF+RP+++GN+ V +Y+DV+STFVYR+GI SG ++ Sbjct: 226 NITLPSLKPTIVTLLIINLGHMIAIGFERPYIIGNTAVRDYADVLSTFVYRIGIESGQYT 285 Query: 287 QATAVGLFQSVVGLVLLLSANFIAKKLGEDGI 318 AT VGLFQ++VGLV +L AN+ +KKL + I Sbjct: 286 IATVVGLFQALVGLVFVLGANYASKKLADTSI 317 >B1D6H5.1 B1D6H5_9BACL Binding-protein-dependent transport systems inner membrane component Length = 319 Score = 346 bits (887), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 162/273 (59%), Positives = 220/273 (80%), Gaps = 1/273 (0%) Query: 48 KYAPIYGLVMAFQDYNIFEGIKGSEWVGLDVFRFIFEQDSFYRALKNTLVLNVLDLIAGF 107 KY P+YG +AFQDY+IF+G+ GS W+G + F+ +F+ FY ++NTL+LN LDL+ F Sbjct: 47 KYVPMYGAAIAFQDYSIFKGVTGSPWIGFENFQELFKMSQFYDVVRNTLLLNFLDLVFSF 106 Query: 108 PAPILLAILLNEVRQAAFKKVTQTVLYLPHFLSWVIIGGMVYLMFSNSG-MINNFLAGFG 166 PAPILLA+LLNE+R FKK QT+LYLPHF+SW+IIGG+VY MFSN G ++NN + G Sbjct: 107 PAPILLALLLNELRAVWFKKTAQTLLYLPHFISWIIIGGLVYQMFSNKGGLVNNVVTSLG 166 Query: 167 LDKIEFLSQKTPWLITYISVGVWQNIGWGTIIYLAAITGINKELYEASDIDGCSRLRQMW 226 D I FL++K WL+ Y+ G+WQ+ GWGTIIYLAA+TGIN++LYEA+D+DG RL++MW Sbjct: 167 FDAIPFLTEKNHWLMVYLGTGIWQSAGWGTIIYLAALTGINRDLYEAADVDGAGRLKKMW 226 Query: 227 HITLPGIKSTINILLILQIGRMVSIGFDRPFVMGNSLVNEYSDVISTFVYRVGISSGDFS 286 HITLPGI+ TI ++LI+Q+G +++IGF+RPFVMGN+LV +Y++VISTFVY+ G+ S FS Sbjct: 227 HITLPGIRPTIVVMLIMQLGHIMTIGFERPFVMGNTLVMDYAEVISTFVYKAGLQSAQFS 286 Query: 287 QATAVGLFQSVVGLVLLLSANFIAKKLGEDGIW 319 ATA+GLFQ++VGL+ ++ +N IAKK GE GIW Sbjct: 287 LATAMGLFQALVGLIFVIVSNTIAKKFGEQGIW 319 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.142 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,712,786,434 Number of extensions: 67325667 Number of successful extensions: 225901 Number of sequences better than 1.0e-05: 5043 Number of HSP's gapped: 222426 Number of HSP's successfully gapped: 5044 Length of query: 319 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 184 Effective length of database: 1,788,859,178 Effective search space: 329150088752 Effective search space used: 329150088752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)