BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0470.0008.p (295 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFG8.1 B3KFG8_9BACI Binding-protein-dependent transport system... 530 e-149 B1D8F3.1 B1D8F3_9BACL Binding-protein-dependent transport system... 486 e-135 B8I4H8.1 B8I4H8_CLOCE Binding-protein-dependent transport system... 354 7e-96 B1D6H4.1 B1D6H4_9BACL Binding-protein-dependent transport system... 322 3e-86 B3KCT2.1 B3KCT2_9BACI Binding-protein-dependent transport system... 321 5e-86 >B3KFG8.1 B3KFG8_9BACI Binding-protein-dependent transport systems inner membrane component Length = 298 Score = 530 bits (1366), Expect = e-149, Method: Compositional matrix adjust. Identities = 260/271 (95%), Positives = 268/271 (98%) Query: 25 LSFTCIVPFLYMIALSFSSNEAIIAQKVGLWPVEFTAETYKTILSDVDMLYTLGYSIVLT 84 LSFTCIVPFLYMIALSFSSNEAII+QKVGLWPV+FTAETYKTILSD+DMLYTLGYSIVLT Sbjct: 28 LSFTCIVPFLYMIALSFSSNEAIISQKVGLWPVDFTAETYKTILSDMDMLYTLGYSIVLT 87 Query: 85 IFYTGVCMFLTICAAYPLTKKRLMGRGFILTALVFTMYFSGGLIPSYILVKNLGMMNTVW 144 IFYT VCMFLTICAAYPLTKKRL GR FILTALVFTMYFSGGLIPSYILVKNLGMMN++W Sbjct: 88 IFYTLVCMFLTICAAYPLTKKRLKGRNFILTALVFTMYFSGGLIPSYILVKNLGMMNSIW 147 Query: 145 SLVLPGAMSVFNMIILKTFFTNLPESLEESAAIDGCSDLGILIKIVLPLSLPSIATLSLF 204 SLVLPGAMSVFNMIILKTFF+NLPESLEESAAIDGCSDLGILIKIVLPLSLPSIATLSLF Sbjct: 148 SLVLPGAMSVFNMIILKTFFSNLPESLEESAAIDGCSDLGILIKIVLPLSLPSIATLSLF 207 Query: 205 YAVDRWNGFQDALFYITKKELYPMQMKLYQIISANQQLDSQQGGEGSIGSYIVPESLKAA 264 YAVDRWNGFQDALFYITKKELYPMQMKLYQIISANQQLDSQQGGEGS+GSYIVPESLKAA Sbjct: 208 YAVDRWNGFQDALFYITKKELYPMQMKLYQIISANQQLDSQQGGEGSVGSYIVPESLKAA 267 Query: 265 SVMFTTLPILLIYPKLQKYFVDGVMTGAIKG 295 SVMFTT+PILLIYPKLQKYFVDGVMTGAIKG Sbjct: 268 SVMFTTIPILLIYPKLQKYFVDGVMTGAIKG 298 >B1D8F3.1 B1D8F3_9BACL Binding-protein-dependent transport systems inner membrane component Length = 298 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 247/271 (91%), Positives = 258/271 (95%) Query: 25 LSFTCIVPFLYMIALSFSSNEAIIAQKVGLWPVEFTAETYKTILSDVDMLYTLGYSIVLT 84 L FTCIVPFLYMIALS SSNEAI++QKVGLWPV FT ETYKTILSDV+MLYTLGYSI+LT Sbjct: 28 LCFTCIVPFLYMIALSLSSNEAIVSQKVGLWPVGFTLETYKTILSDVEMLYTLGYSILLT 87 Query: 85 IFYTGVCMFLTICAAYPLTKKRLMGRGFILTALVFTMYFSGGLIPSYILVKNLGMMNTVW 144 + YT VCMFLTIC AYPLTKKRLMGR FIL+ALVFTMYFSGGLIPSYILVKNLGMMNTVW Sbjct: 88 VLYTVVCMFLTICGAYPLTKKRLMGRNFILSALVFTMYFSGGLIPSYILVKNLGMMNTVW 147 Query: 145 SLVLPGAMSVFNMIILKTFFTNLPESLEESAAIDGCSDLGILIKIVLPLSLPSIATLSLF 204 SLVLPGAMSVFN+IILKTFF NLPESLEESAAIDGCSDLGIL+KIVLPLSLPSIATLSLF Sbjct: 148 SLVLPGAMSVFNLIILKTFFNNLPESLEESAAIDGCSDLGILMKIVLPLSLPSIATLSLF 207 Query: 205 YAVDRWNGFQDALFYITKKELYPMQMKLYQIISANQQLDSQQGGEGSIGSYIVPESLKAA 264 YAVDRWNGFQDALFYIT K LYPMQMKLYQIISANQQLDSQQGGEG G+YIVPESLKAA Sbjct: 208 YAVDRWNGFQDALFYITDKNLYPMQMKLYQIISANQQLDSQQGGEGGAGAYIVPESLKAA 267 Query: 265 SVMFTTLPILLIYPKLQKYFVDGVMTGAIKG 295 SVMFTT+PILL+YPKLQKYFVDGVMTGAIKG Sbjct: 268 SVMFTTIPILLVYPKLQKYFVDGVMTGAIKG 298 >B8I4H8.1 B8I4H8_CLOCE Binding-protein-dependent transport systems inner membrane component Length = 290 Score = 354 bits (908), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 165/267 (61%), Positives = 215/267 (80%), Gaps = 1/267 (0%) Query: 29 CIVPFLYMIALSFSSNEAIIAQKVGLWPVEFTAETYKTILSDVDMLYTLGYSIVLTIFYT 88 C+ P L ++A+S SSN AI+A KV +WP++F E+YK IL D M+++L Y+I++T YT Sbjct: 25 CLFPVLNVVAVSLSSNSAILASKVFVWPIDFNIESYKAILKDTTMIWSLVYTIIITFAYT 84 Query: 89 GVCMFLTICAAYPLTKKRLMGRGFILTALVFTMYFSGGLIPSYILVKNLGMMNTVWSLVL 148 + MFLTICAAYPLTK+RL GR I+ ++FTMYFSGGLIP Y+LVKNL M+++ WSL+L Sbjct: 85 AIGMFLTICAAYPLTKQRLRGRNAIMLMIIFTMYFSGGLIPDYMLVKNLNMLDSSWSLIL 144 Query: 149 PGAMSVFNMIILKTFFTNLPESLEESAAIDGCSDLGILIKIVLPLSLPSIATLSLFYAVD 208 PG +S FN+I+LKTFFT+LPESLEESA +DGC+D+G+L KIVLPLS P +ATLSLFYAV Sbjct: 145 PGVLSAFNLIVLKTFFTSLPESLEESAILDGCNDIGVLFKIVLPLSKPVLATLSLFYAVG 204 Query: 209 RWNGFQDALFYITKKELYPMQMKLYQIISANQQLDSQQGGEGSIGSYIVPESLKAASVMF 268 +WN F DALFYI+ +LYP+Q+KLYQII +Q +D+ G+G + + PESLKAA V+F Sbjct: 205 KWNSFMDALFYISDSKLYPLQLKLYQIIVNSQTVDASI-GDGGVSQNLPPESLKAACVVF 263 Query: 269 TTLPILLIYPKLQKYFVDGVMTGAIKG 295 TLPI+L+YPKLQKYFV G+M GA+KG Sbjct: 264 ATLPIVLVYPKLQKYFVSGIMIGAVKG 290 >B1D6H4.1 B1D6H4_9BACL Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 322 bits (825), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 148/267 (55%), Positives = 206/267 (77%), Gaps = 1/267 (0%) Query: 29 CIVPFLYMIALSFSSNEAIIAQKVGLWPVEFTAETYKTILSDVDMLYTLGYSIVLTIFYT 88 C++PFL++IA+S S+ + II+ +V ++P + E+Y+ + D ML ++G +I+LT +T Sbjct: 28 CLIPFLHIIAVSLSAKQEIISDRVTIFPRGWDWESYRIVFQDARMLKSMGLTIILTTVFT 87 Query: 89 GVCMFLTICAAYPLTKKRLMGRGFILTALVFTMYFSGGLIPSYILVKNLGMMNTVWSLVL 148 V M ++ICAAYPLTK +L GR + +VFTM+FSGGLIP Y+LVK LG+++ ++SL+L Sbjct: 88 AVSMIMSICAAYPLTKTQLKGRSVFMMIIVFTMFFSGGLIPEYLLVKQLGLLDNMFSLIL 147 Query: 149 PGAMSVFNMIILKTFFTNLPESLEESAAIDGCSDLGILIKIVLPLSLPSIATLSLFYAVD 208 PG +S FN+IIL++FFT++P SLEESA +DG S +G L++IVLPLSLP +ATLSLFYAV Sbjct: 148 PGMISAFNLIILRSFFTSIPASLEESAYLDGSSHIGTLLRIVLPLSLPVLATLSLFYAVS 207 Query: 209 RWNGFQDALFYITKKELYPMQMKLYQIISANQQLDSQQGGEGSIGSYIVPESLKAASVMF 268 RWNGF DALFYI+ E+YP+Q+KLYQ++ N + EG+ S +VPE LKAAS+MF Sbjct: 208 RWNGFMDALFYISNSEMYPIQLKLYQVV-MNSMVTDLTAQEGAAASEVVPEGLKAASIMF 266 Query: 269 TTLPILLIYPKLQKYFVDGVMTGAIKG 295 TLPIL++YP LQ+YFV GVM GA+KG Sbjct: 267 ATLPILVVYPWLQRYFVSGVMIGAVKG 293 >B3KCT2.1 B3KCT2_9BACI Binding-protein-dependent transport systems inner membrane component Length = 291 Score = 321 bits (822), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 150/267 (56%), Positives = 206/267 (77%) Query: 29 CIVPFLYMIALSFSSNEAIIAQKVGLWPVEFTAETYKTILSDVDMLYTLGYSIVLTIFYT 88 C+ PF ++IA+SFSSN A+ + +V L+PVEF+ + Y+++ SD M+ +LG++I+LT+ T Sbjct: 25 CLAPFFHIIAISFSSNRAVTSGEVTLFPVEFSLQAYQSVFSDSSMIRSLGFTIMLTLLTT 84 Query: 89 GVCMFLTICAAYPLTKKRLMGRGFILTALVFTMYFSGGLIPSYILVKNLGMMNTVWSLVL 148 +CM +T+ AAYPLTKK+L GR + ++ TM+FSGG+IP YILVK+L ++NT+W+LVL Sbjct: 85 VLCMAMTMIAAYPLTKKKLKGRKVFMFIIIVTMFFSGGIIPEYILVKDLNLLNTIWALVL 144 Query: 149 PGAMSVFNMIILKTFFTNLPESLEESAAIDGCSDLGILIKIVLPLSLPSIATLSLFYAVD 208 PG +S F +IIL +FF +PESLEE+A IDG S +G +++I+LPLSLP IATLSLFYAV Sbjct: 145 PGLISPFYLIILISFFNGIPESLEEAAEIDGTSQIGTMLRIILPLSLPVIATLSLFYAVG 204 Query: 209 RWNGFQDALFYITKKELYPMQMKLYQIISANQQLDSQQGGEGSIGSYIVPESLKAASVMF 268 RWNGFQD L YITK+ELYP+Q+KLYQ++ N D + + G ESLKAASV+F Sbjct: 205 RWNGFQDTLLYITKEELYPLQLKLYQLVQNNMITDLTRNEGPAAGVRATTESLKAASVVF 264 Query: 269 TTLPILLIYPKLQKYFVDGVMTGAIKG 295 T+PIL++YP LQ+YFV GVM GA+KG Sbjct: 265 ATVPILVVYPWLQRYFVSGVMLGAVKG 291 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.140 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,508,469,615 Number of extensions: 58902050 Number of successful extensions: 221103 Number of sequences better than 1.0e-05: 5648 Number of HSP's gapped: 213408 Number of HSP's successfully gapped: 5648 Length of query: 295 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 161 Effective length of database: 1,798,280,193 Effective search space: 289523111073 Effective search space used: 289523111073 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)