BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0470.0003.p (302 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q9KBQ6.1 Q9KBQ6_BACHD BH1869 protein 268 4e-70 B1DDC3.1 B1DDC3_9BACL Transcriptional regulator, ArsR family 268 6e-70 B3KK57.1 B3KK57_9BACI Regulatory protein ArsR 266 2e-69 B8I0K3.1 B8I0K3_CLOCE Transcriptional regulator, ArsR family 263 1e-68 Q5WL11.1 Q5WL11_BACSK Transcriptional regulator 261 7e-68 >Q9KBQ6.1 Q9KBQ6_BACHD BH1869 protein Length = 313 Score = 268 bits (685), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 134/297 (45%), Positives = 185/297 (62%), Gaps = 6/297 (2%) Query: 2 MKVDVTTANMRILECFSSDTRVRMIELMNEKPYNIGELAEALGLSSAIITKHILKLEEAG 61 M++D++ ++ + E +S R+ +I+ + K NI ELAEA+GLSSAI+T HI KLE+AG Sbjct: 1 MQLDISNESLPVYEALASKVRLAIIQQLTRKSMNIRELAEAVGLSSAIMTMHIKKLEKAG 60 Query: 62 IVATENLAGKRGTQKRCTLKLDQLTLVLRSSAAEEQPDQNQLTVDLPVGQYYAYEVRPTC 121 I+ TE + GK G QK C L D + + +E T+ L VG Y + V PTC Sbjct: 61 IIRTEMVPGKAGIQKLCILDTDHIEINF--PPKKESLKLYHQTI-LSVGHYTDFLVEPTC 117 Query: 122 GLASPEKLIGMLDDPRYFDDPEHTKAELLWFASGFVEYRIPNYLVGNQXXXXXXXXXXXX 181 GLA+ EK+IG D+PRYF DPE A++LWF+ G++EY+IPN+L ++ Sbjct: 118 GLATAEKIIGEFDEPRYFLDPERVNAKILWFSKGYIEYKIPNFLHHSENPKELEISLELS 177 Query: 182 XXXPKYNDNWPSDITFSVNGLDLATWTCPGDFGSRRGQYTPSWW--VDTQYGLHKTLSIT 239 P NDNWPSDI+F N + + WT PGDFG G+YTP WW V QYGL K + IT Sbjct: 178 SEAPFTNDNWPSDISFYFNNVKIGIWTSPGDFGDSPGKYTPDWWPKVINQYGLLKFIRIT 237 Query: 240 DNGTFIDGVQFSGTRIGQLNIRAGQELRFRISCPETAVHCGGVSLFGKGFGNYPQDI 296 GTFI+G + S I ++IR+ Q FR++ P+ A + GGV++FG+GFGNY QDI Sbjct: 238 KEGTFIEGAKISDVTIDDVHIRSKQ-WSFRVAVPDDAENVGGVTIFGEGFGNYNQDI 293 >B1DDC3.1 B1DDC3_9BACL Transcriptional regulator, ArsR family Length = 305 Score = 268 bits (684), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 130/300 (43%), Positives = 187/300 (62%), Gaps = 8/300 (2%) Query: 1 MMKVDVTTANMRILECFSSDTRVRMIELMN--EKPYNIGELAEALGLSSAIITKHILKLE 58 ++K D A + + E +S R+ +++L+ +P N+ +LA ALGLSSAI+T H+ KLE Sbjct: 2 LIKTDTDHAWLPLYEALASPVRLNILDLLAAASEPMNVKDLAAALGLSSAIVTMHVRKLE 61 Query: 59 EAGIVATENLAGKRGTQKRCTLKLDQLTLVLRSSAAEEQPDQNQLTVDLPVGQYYAYEVR 118 +AGI+ T+ + + GT K C + ++ + L + + + +P+G Y +EV Sbjct: 62 QAGIIQTKMVRKQGGTHKICEIAASRIQIDLPQAGFIPKKTHE---ISIPIGHYTEFEVH 118 Query: 119 PTCGLASPEKLIGMLDDPRYFDDPEHTKAELLWFASGFVEYRIPNYLVGNQXXXXXXXXX 178 PTCG+A+ EK+IG DD RYF +PE A +LWF G+VEYRIPNYL+ Q Sbjct: 119 PTCGIATTEKVIGQFDDARYFLEPERMNAGILWFGQGYVEYRIPNYLLPGQRPEELEIVL 178 Query: 179 XXXXXXPKYNDNWPSDITFSVNGLDLATWTCPGDFGSRRGQYTPSWWVD--TQYGLHKTL 236 P YN+NWPSDI F++NG+ + WT PGD+G+ +G+YTPSWW D QYGL K + Sbjct: 179 EISSEAPGYNENWPSDIVFTLNGVRIGMWTSPGDYGAIKGKYTPSWWQDFVNQYGLLKII 238 Query: 237 SITDNGTFIDGVQFSGTRIGQLNIRAGQELRFRISCPETAVHCGGVSLFGKGFGNYPQDI 296 + NGTFIDG Q S T I Q+ + Q + FR++ + A H GG++LFGKGFGNY QD+ Sbjct: 239 RVQKNGTFIDGQQISDTGIDQIGLNRNQWV-FRLAVEDNAAHVGGLTLFGKGFGNYNQDM 297 >B3KK57.1 B3KK57_9BACI Regulatory protein ArsR Length = 300 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 129/306 (42%), Positives = 188/306 (61%), Gaps = 16/306 (5%) Query: 2 MKVDVTTANMRILECFSSDTRVRMIELMNEKPYNIGELAEALGLSSAIITKHILKLEEAG 61 M++++ +++ + E +S+ R+++I+L+++ NI +LA+ L +SS I+TKHI KLE+AG Sbjct: 1 MQLEIDKSSLVVYEALASEVRIKIIQLLSKNKMNIKDLAQELQISSPIVTKHIKKLEDAG 60 Query: 62 IVATENLAGKRGTQKRCTLKLDQLTL-----VLRSSAAEEQPDQNQLTVDLPVGQYYAYE 116 I+ TE + GK G QK LK+D + + + S A+ E +P+G Y Y+ Sbjct: 61 IIRTEKVPGKSGQQKISILKVDHIEINFPKKIFHSFASYE--------ASVPIGHYTDYD 112 Query: 117 VRPTCGLASPEKLIGMLDDPRYFDDPEHTKAELLWFASGFVEYRIPNYLVGNQXXXXXXX 176 ++PTCGLA+ ++ IG +D+P+YF DP+ AE+LWF GF++Y I N+L ++ Sbjct: 113 LKPTCGLATEKEFIGRVDEPKYFMDPKRVDAEILWFTEGFIQYNIANFLQKDEKLQQFEI 172 Query: 177 XXXXXXXXPKYNDNWPSDITFSVNGLDLATWTCPGDFGSRRGQYTPSWWVD--TQYGLHK 234 P ND WPSDITFS+NG++L TWT PGDF RG+YTP WW QYGL K Sbjct: 173 SLEISSEFPFSNDVWPSDITFSLNGMELGTWTSPGDFADTRGKYTPEWWPHNINQYGLLK 232 Query: 235 TLSITDNGTFIDGVQFSGTRIGQLNIRAGQELRFRISCPETAVHCGGVSLFGKGFGNYPQ 294 T+ IT +GT+IDG S + LN A FRI E A H GG +LFGK FGN+ Q Sbjct: 233 TIRITSHGTYIDGDPLSTVSVDDLN-SACDRWTFRIEVKEDAKHVGGATLFGKKFGNHAQ 291 Query: 295 DIRVTI 300 DI+ + Sbjct: 292 DIQFKM 297 >B8I0K3.1 B8I0K3_CLOCE Transcriptional regulator, ArsR family Length = 300 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 129/297 (43%), Positives = 181/297 (60%), Gaps = 6/297 (2%) Query: 2 MKVDVTTANMRILECFSSDTRVRMIELMNEKPYNIGELAEALGLSSAIITKHILKLEEAG 61 MK D++ + + E SS R+++I ++ + NI ++AE LGLSSAI+T H+ KLE AG Sbjct: 1 MKTDISEKWLPVYEALSSRVRIKIINILAQNSLNIKQIAEELGLSSAIVTMHVKKLEAAG 60 Query: 62 IVATENLAGKRGTQKRCTLKLDQLTLVLRSSAAEEQPDQNQLTVDLPVGQYYAYEVRPTC 121 IV +E + K QK C L +D L + S A+ + +P+G Y + V PTC Sbjct: 61 IVHSERKSIKGAVQKICFLDVDSLEIQFPSRKAKVRSYHE---FSMPIGHYSDFSVTPTC 117 Query: 122 GLASPEKLIGMLDDPRYFDDPEHTKAELLWFASGFVEYRIPNYLVGNQXXXXXXXXXXXX 181 G+A+PEK+IG DDPRYF DP+ A +LWF GFVEYRIPN+L+ Q Sbjct: 118 GIATPEKVIGQFDDPRYFLDPDRVNAGILWFTEGFVEYRIPNFLLSVQQPEELEISMELG 177 Query: 182 XXXPKYNDNWPSDITFSVNGLDLATWTCPGDFGSRRGQYTPSWWVDT--QYGLHKTLSIT 239 P N NWPSDI+F +N + WT PGD+G+ RG+YTP WW QYGL+K + I Sbjct: 178 SEAPGINSNWPSDISFFLNERIIGQWTSPGDYGNSRGKYTPRWWSLQVGQYGLYKAIRIA 237 Query: 240 DNGTFIDGVQFSGTRIGQLNIRAGQELRFRISCPETAVHCGGVSLFGKGFGNYPQDI 296 +G++IDG++ S T + L+IR + FRI+ + + GGV++FGKGFGNY +DI Sbjct: 238 QDGSYIDGIKVSDTTLSSLDIRQ-KYWSFRIAVLPESQNVGGVTIFGKGFGNYSRDI 293 >Q5WL11.1 Q5WL11_BACSK Transcriptional regulator Length = 303 Score = 261 bits (666), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 124/297 (41%), Positives = 183/297 (61%), Gaps = 5/297 (1%) Query: 2 MKVDVTTANMRILECFSSDTRVRMIELMNEKPYNIGELAEALGLSSAIITKHILKLEEAG 61 + +D+T ++ + E +S R+ +++L+ E+ NI ELAE+ +SSAI+TKH+ KLE+AG Sbjct: 3 LDLDLTKQSLPVYEALASRIRLNVLQLLAERSMNIKELAESQQVSSAIMTKHVQKLEKAG 62 Query: 62 IVATENLAGKRGTQKRCTLKLDQLTLVLRSSAAEEQPDQNQLTVDLPVGQYYAYEVRPTC 121 ++ T ++ GK G QK C+L++ + + E P + + VG + + V PTC Sbjct: 63 LIDTTHVRGKAGVQKMCSLRVRHAQIAFPNK--ENGPTRAFHESHVSVGHFTDFYVEPTC 120 Query: 122 GLASPEKLIGMLDDPRYFDDPEHTKAELLWFASGFVEYRIPNYLVGNQXXXXXXXXXXXX 181 GLA+PE ++G D+PRYF DP A +LWF GFVEY++ N++ G + Sbjct: 121 GLATPETIVGEFDEPRYFLDPMRVNARILWFYKGFVEYKLSNFIHGGETPKELEISMELS 180 Query: 182 XXXPKYNDNWPSDITFSVNGLDLATWTCPGDFGSRRGQYTPSWWVD--TQYGLHKTLSIT 239 P NDNWPSD++F+ NG+ L W PGDFG ++G+YTP+WW QYGL K + IT Sbjct: 181 SEAPFTNDNWPSDVSFTFNGVSLGYWRSPGDFGDQKGKYTPAWWPRGINQYGLLKVIRIT 240 Query: 240 DNGTFIDGVQFSGTRIGQLNIRAGQELRFRISCPETAVHCGGVSLFGKGFGNYPQDI 296 + GTFIDG Q S ++ ++IR + FR++ E VH GGV+LFG FGNY QDI Sbjct: 241 EAGTFIDGKQLSDVKLADVSIRE-KVWTFRVAVGEEGVHIGGVTLFGSSFGNYDQDI 296 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,754,364,473 Number of extensions: 72162369 Number of successful extensions: 172601 Number of sequences better than 1.0e-05: 58 Number of HSP's gapped: 172461 Number of HSP's successfully gapped: 58 Length of query: 302 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 167 Effective length of database: 1,788,859,178 Effective search space: 298739482726 Effective search space used: 298739482726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)