BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0469.0004.p (165 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1BU11.1 B1BU11_CLOPE Putative lipid A export ATP-binding/permea... 187 4e-46 B6F5B8.1 B6F5B8_LIBAS ABC transporter, nucleotide binding/ATPase... 162 1e-38 B1D7Z4.1 B1D7Z4_9BACL ABC transporter related 157 3e-37 Q0SU03.1 Q0SU03_CLOPS Bacteriocin ABC transporter, ATP-binding/p... 156 5e-37 Q9ZDW0.1 Q9ZDW0_RICPR MITOCHONDRIAL TRANSPORTER ATM1 (Atm1) 155 8e-37 >B1BU11.1 B1BU11_CLOPE Putative lipid A export ATP-binding/permease protein MsbA Length = 586 Score = 187 bits (474), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 86/159 (54%), Positives = 119/159 (74%) Query: 1 VHQTPYLFNATFAENMLIANQAATEEEMIAICKQIKIHDYIMSLPHGYKTVIEENGANLS 60 V Q P++ N T EN+L+ N A++ E+I C+Q IHDYIMSLP Y TVI N AN+S Sbjct: 420 VRQEPFMLNLTIKENLLMVNNKASDNELINACRQANIHDYIMSLPEQYNTVISGNSANIS 479 Query: 61 GGQKQRIAIARAMLKKSKIILFDEATSSLDNETQQLVKELISSISHDHTVVVIAHRLSSI 120 GGQKQR++IARA+LK SKIILFDE TS LDN +Q+ +++ I ++S +HTV+VIAHRLS+I Sbjct: 480 GGQKQRLSIARAILKNSKIILFDEVTSGLDNISQRFIQDSIDNMSENHTVIVIAHRLSTI 539 Query: 121 IDSDEILVIDAGKLVGQGSHRNLLNNNFTYKKLYESELE 159 I+SD I+VI+ G+++G G H L+ N Y++LY +E + Sbjct: 540 INSDLIIVIENGEIIGCGKHNKLIKENSKYRELYNAEFK 578 >B6F5B8.1 B6F5B8_LIBAS ABC transporter, nucleotide binding/ATPase protein Length = 596 Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 82/160 (51%), Positives = 109/160 (68%), Gaps = 2/160 (1%) Query: 1 VHQTPYLFNATFAENMLIANQAATEEEMIAICKQIKIHDYIMSLPHGYKTVIEENGANLS 60 V Q +LF+ T N+LI ATEEEMI I K HD+IMSLP GY T + ENG+NLS Sbjct: 432 VGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLS 491 Query: 61 GGQKQRIAIARAMLKKSKIILFDEATSSLDNETQQLVKELISSISHDHTVVVIAHRLSSI 120 GGQKQRIAIARAML+ I++ DEATS+LD T+ LV++ +S + T +VIAHR+S+I Sbjct: 492 GGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTI 551 Query: 121 IDSDEILVIDAGKLVGQGSHRNLLN--NNFTYKKLYESEL 158 I++D I+ I+ GK+ G + LL + YKK+Y S+L Sbjct: 552 IEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQL 591 >B1D7Z4.1 B1D7Z4_9BACL ABC transporter related Length = 597 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 78/159 (49%), Positives = 105/159 (66%) Query: 1 VHQTPYLFNATFAENMLIANQAATEEEMIAICKQIKIHDYIMSLPHGYKTVIEENGANLS 60 V Q YLFN T EN++ AN A+EEEM CK IH++IM LP GY TV+ G LS Sbjct: 433 VTQDSYLFNGTIRENLMYANDEASEEEMRVACKAAYIHEFIMELPDGYDTVVGNRGMKLS 492 Query: 61 GGQKQRIAIARAMLKKSKIILFDEATSSLDNETQQLVKELISSISHDHTVVVIAHRLSSI 120 GG+KQRI+IAR +LK II+ DEATSSLD ++ +++ +S + + T +VIAHRLS+I Sbjct: 493 GGEKQRISIARVLLKDPAIIILDEATSSLDTVSEYYIQKAMSVLLQNKTSIVIAHRLSTI 552 Query: 121 IDSDEILVIDAGKLVGQGSHRNLLNNNFTYKKLYESELE 159 + SD+ILV+ G +V +G H LL N YK L+ + E Sbjct: 553 MASDQILVVQDGAIVEKGRHEELLLQNGVYKDLHAKQFE 591 >Q0SU03.1 Q0SU03_CLOPS Bacteriocin ABC transporter, ATP-binding/permease protein, putative Length = 738 Score = 156 bits (395), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 73/158 (46%), Positives = 112/158 (70%) Query: 1 VHQTPYLFNATFAENMLIANQAATEEEMIAICKQIKIHDYIMSLPHGYKTVIEENGANLS 60 + Q +LFN T EN+++ N T EE+I CK+ +IHD+I SLP Y T++EENG+N S Sbjct: 562 ISQETFLFNGTIIENLMLGNPYLTYEEIIEACKKAQIHDFINSLPLRYNTLVEENGSNFS 621 Query: 61 GGQKQRIAIARAMLKKSKIILFDEATSSLDNETQQLVKELISSISHDHTVVVIAHRLSSI 120 GGQKQR++IARA+L+K +I++ DEATS+LD+ T++ +++ I S T ++IAHRLS+I Sbjct: 622 GGQKQRLSIARAILRKPEILIMDEATSNLDSITEKAIEKTIHEFSEGMTTIIIAHRLSTI 681 Query: 121 IDSDEILVIDAGKLVGQGSHRNLLNNNFTYKKLYESEL 158 D I +++ G++ QG+H+ LLN Y KL++ +L Sbjct: 682 KRCDNIYILEKGEIKEQGNHKELLNKKGRYYKLWKEQL 719 >Q9ZDW0.1 Q9ZDW0_RICPR MITOCHONDRIAL TRANSPORTER ATM1 (Atm1) Length = 609 Score = 155 bits (393), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 79/163 (48%), Positives = 111/163 (68%), Gaps = 1/163 (0%) Query: 1 VHQTPYLFNATFAENMLIANQAATEEEMIAICKQIKIHDYIMSLPHGYKTVIEENGANLS 60 V Q LFN T N+ N AA+ +E+IA K IH++I LP GY T + E G LS Sbjct: 435 VPQDTVLFNDTIYYNIAYGNNAASYDEVIAASKNAHIHEFISVLPEGYATQVGERGLKLS 494 Query: 61 GGQKQRIAIARAMLKKSKIILFDEATSSLDNETQQLVKELISSISHDHTVVVIAHRLSSI 120 GG+KQRIAIAR +LK I +FDEATSSLD +T++L++ + IS +HT ++IAHRLS+I Sbjct: 495 GGEKQRIAIARTILKNPSIYVFDEATSSLDTKTEKLIQASLKEISANHTTLIIAHRLSTI 554 Query: 121 IDSDEILVIDAGKLVGQGSHRNLLNNNFTYKKL-YESELECRE 162 +D+DEI+V+D G +V +G+H+ LL N Y +L Y+ + EC + Sbjct: 555 VDADEIIVLDNGYIVERGNHKTLLKNQGYYAELWYKQQEECNQ 597 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.132 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 891,238,431 Number of extensions: 31885338 Number of successful extensions: 244395 Number of sequences better than 1.0e-05: 39136 Number of HSP's gapped: 249317 Number of HSP's successfully gapped: 41583 Length of query: 165 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 40 Effective length of database: 1,883,069,328 Effective search space: 75322773120 Effective search space used: 75322773120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)