BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0468.0002.p (212 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D865.1 B1D865_9BACL Putative uncharacterized protein 147 8e-34 B0QTC1.1 B0QTC1_HAEPR Putative uncharacterized protein 134 6e-30 A7JUQ8.1 A7JUQ8_PASHA Putative uncharacterized protein 132 2e-29 C0DIT6.1 C0DIT6_NEIMU Putative uncharacterized protein 127 7e-28 C0EQA6.1 C0EQA6_NEIFL Putative uncharacterized protein 126 1e-27 >B1D865.1 B1D865_9BACL Putative uncharacterized protein Length = 200 Score = 147 bits (370), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 79/189 (41%), Positives = 115/189 (60%), Gaps = 3/189 (1%) Query: 23 MIETRPVMTVFAGTNGAGKSTLSMQMKSWLGELV--DPDQIARELKPDNPRGADLSAGRE 80 M E M VFAG NG+GKST+ + LG V DPD +AR + NP +SAG++ Sbjct: 1 MNEPLATMFVFAGNNGSGKSTIRNLIIDRLGVSVNIDPDALARRIDSVNPERRKVSAGKD 60 Query: 81 AVRRIRSLIKQAQPFAIETTLSGTFVLKHMQIAKENGYEIVMYYIGLQDVQMHIDRVASR 140 A++ +R I + F +ETTL+G V++ M+ AK+NG+E++M+Y+GL DV ++I+RVA+R Sbjct: 61 AIKLVRECILHRRDFTVETTLAGGNVIRQMREAKDNGFEVIMFYVGLGDVLLNIERVAAR 120 Query: 141 VEQGGHWIAEEDIRWRYGQSLQNLTPALAIADQVIIIDN-TYEPTIVAEIKHNNMVYCVE 199 V GGH I DI R+ SL NL L + D +I+IDN + E IV E + Y + Sbjct: 121 VRNGGHHIETADILRRHQTSLNNLIAHLDLIDHLIVIDNSSTEGEIVLEAHRATIKYYEK 180 Query: 200 NVPAWSAAI 208 +P W +I Sbjct: 181 CMPEWVISI 189 >B0QTC1.1 B0QTC1_HAEPR Putative uncharacterized protein Length = 197 Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 71/189 (37%), Positives = 114/189 (60%), Gaps = 3/189 (1%) Query: 24 IETRPVMTVFAGTNGAGKSTLSMQMKSWLGELVDPDQIARELKPDNPRGADLSAGREAVR 83 + + + + GTNGAGKSTL + + ++D D IA ++ PDNPR AD+ AGR+A+ Sbjct: 1 MHNKSLAIFYCGTNGAGKSTLRSFNRDSVQIVIDSDHIAMQINPDNPRLADIEAGRKAIE 60 Query: 84 RIRSLIKQAQPFAIETTLSGTFVLKHMQIAKENGYEIVMYYIGLQDVQMHIDRVASRVEQ 143 + I+ F++E+TLSG +L+ M++AK+N Y + Y+G+ D +++I RV +RV+ Sbjct: 61 LFKFAIRHNISFSMESTLSGKSILQRMEVAKKNFY-TRLNYVGVDDPKINIARVKARVKA 119 Query: 144 GGHWIAEEDIRWRYGQSLQNLTPALAIADQVIIIDNTYE-PTIVAEIKHNNMVY-CVENV 201 GGH+I EE I+ RY S +NL A+ + D+ I DN+ + P I I N V + + Sbjct: 120 GGHFIDEETIKRRYQISRENLIQAILLNDETFIYDNSSDSPKIQLVISANKTVTKLADKL 179 Query: 202 PAWSAAIVS 210 P W +V+ Sbjct: 180 PQWCEDLVN 188 >A7JUQ8.1 A7JUQ8_PASHA Putative uncharacterized protein Length = 197 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 67/174 (38%), Positives = 107/174 (61%), Gaps = 1/174 (0%) Query: 33 FAGTNGAGKSTLSMQMKSWLGELVDPDQIARELKPDNPRGADLSAGREAVRRIRSLIKQA 92 + GTNGAGKSTL + + ++D D IA ++ P NPR AD+ AGR+A+ + +K Sbjct: 9 YCGTNGAGKSTLRSFNQDKVEIVIDSDNIAMQINPLNPRLADIEAGRKAIELFQFAVKNQ 68 Query: 93 QPFAIETTLSGTFVLKHMQIAKENGYEIVMYYIGLQDVQMHIDRVASRVEQGGHWIAEED 152 F++E+TLSG +LK M+ AK ++ + YIG+ +++I RV +RV+ GGH+I EE Sbjct: 69 VAFSMESTLSGKSILKRMENAKAGYFKTRLNYIGVDSYKINIARVKARVKAGGHFIDEET 128 Query: 153 IRWRYGQSLQNLTPALAIADQVIIIDNT-YEPTIVAEIKHNNMVYCVENVPAWS 205 IR RY S +NL A+ I D+ +I DN+ +P ++ +I ++ + +P W Sbjct: 129 IRKRYHISRENLIEAIFINDETLIYDNSETKPNLILQIADKKVIKISDKIPNWC 182 >C0DIT6.1 C0DIT6_NEIMU Putative uncharacterized protein Length = 204 Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 65/158 (41%), Positives = 91/158 (57%) Query: 23 MIETRPVMTVFAGTNGAGKSTLSMQMKSWLGELVDPDQIARELKPDNPRGADLSAGREAV 82 M RP + G NG+GKSTL + + ++D D IA E+ P+ PR AD+ AG+ A+ Sbjct: 1 MSNNRPKAIFYCGANGSGKSTLRQFNQDRVSLVIDSDHIAAEINPEMPRLADMEAGKTAL 60 Query: 83 RRIRSLIKQAQPFAIETTLSGTFVLKHMQIAKENGYEIVMYYIGLQDVQMHIDRVASRVE 142 R R + F++E+TLSG L +Q A G+ +++ YIGL +++I R+ RV Sbjct: 61 RLFRQALDNRISFSMESTLSGKSALTRIQTASNAGFYVILNYIGLATPELNIRRMQERVA 120 Query: 143 QGGHWIAEEDIRWRYGQSLQNLTPALAIADQVIIIDNT 180 GGHWI E I RY SLQNL AL AD+ I DN+ Sbjct: 121 SGGHWIDPELILKRYHVSLQNLHTALPFADESFIFDNS 158 >C0EQA6.1 C0EQA6_NEIFL Putative uncharacterized protein Length = 204 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 65/158 (41%), Positives = 91/158 (57%) Query: 23 MIETRPVMTVFAGTNGAGKSTLSMQMKSWLGELVDPDQIARELKPDNPRGADLSAGREAV 82 M RP + G NG+GKSTL + + ++D D IA E+ P+ PR AD+ AG+ A+ Sbjct: 1 MSNNRPKAIFYCGANGSGKSTLRQFNQDRVSLVIDSDHIAAEINPEMPRLADMEAGKTAL 60 Query: 83 RRIRSLIKQAQPFAIETTLSGTFVLKHMQIAKENGYEIVMYYIGLQDVQMHIDRVASRVE 142 R R + F++E+TLSG L +Q A G+ +++ YIGL +++I R+ RV Sbjct: 61 RLFRQALDNRISFSMESTLSGKSALTRIQTASNAGFYVILNYIGLAMPELNIRRMQERVA 120 Query: 143 QGGHWIAEEDIRWRYGQSLQNLTPALAIADQVIIIDNT 180 GGHWI E I RY SLQNL AL AD+ I DN+ Sbjct: 121 SGGHWIDPELILKRYHVSLQNLHTALPFADESFIFDNS 158 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.133 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,246,999,806 Number of extensions: 48570588 Number of successful extensions: 199586 Number of sequences better than 1.0e-05: 169 Number of HSP's gapped: 199427 Number of HSP's successfully gapped: 169 Length of query: 212 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 82 Effective length of database: 1,835,964,253 Effective search space: 150549068746 Effective search space used: 150549068746 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)