BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0462.0012.p
         (104 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KLB8.1 B3KLB8_9BACI YrvD                                            110   4e-23
A6CU39.1 A6CU39_9BACI YrvD                                             98   2e-19
Q2B1D6.1 Q2B1D6_9BACI Putative uncharacterized protein                 95   2e-18
B4ALW2.1 B4ALW2_BACPU Putative uncharacterized protein                 81   3e-14
A8FFQ2.1 A8FFQ2_BACP2 Putative uncharacterized protein yrvD            81   4e-14

>B3KLB8.1 B3KLB8_9BACI YrvD
          Length = 108

 Score =  110 bits (275), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 72/95 (75%)

Query: 1  LQWSLILGLIFALLTAVFAVINVDPVEVNFYFDVVSIPLILVILGCALIGGVIVGSYGIF 60
          +QWSLI  L+FAL+TAVFAVINV+PV VN  F  V++PLIL+I+GC+LIGG+IVG++GI+
Sbjct: 3  IQWSLIAALLFALITAVFAVINVNPVAVNLLFGTVNVPLILLIIGCSLIGGLIVGTFGIY 62

Query: 61 RQYKLQKQIKGLTAELNKLRDAGNSLDAVSANPDS 95
          RQY++QK+I+ L  +L  +R+       + A  + 
Sbjct: 63 RQYQMQKEIRSLAEQLIHIREVTGYTPEIQAAEEE 97


>A6CU39.1 A6CU39_9BACI YrvD
          Length = 113

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 65/100 (65%)

Query: 1   LQWSLILGLIFALLTAVFAVINVDPVEVNFYFDVVSIPLILVILGCALIGGVIVGSYGIF 60
            QW+LILGLIFAL+ A+FAVINVDPV VN+ F     PLILVI+G  L+GG+IVGS G+F
Sbjct: 3   FQWNLILGLIFALIVAIFAVINVDPVRVNYLFGEAEWPLILVIIGSVLMGGLIVGSVGLF 62

Query: 61  RQYKLQKQIKGLTAELNKLRDAGNSLDAVSANPDSLSANS 100
           R + +Q+++K L  E  +L      ++        + A S
Sbjct: 63  RLFVVQRKVKALQKENERLTKEAEGIETTGKTSPPVPAAS 102


>Q2B1D6.1 Q2B1D6_9BACI Putative uncharacterized protein
          Length = 106

 Score = 94.7 bits (234), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 1  LQWSLILGLIFALLTAVFAVINVDPVEVNFYFDVVSIPLILVILGCALIGGVIVGSYGIF 60
          +QW+LI G++FAL+ AVFAVINVDPV VN+ F     PLILVILG  L+GG+IVG  G+F
Sbjct: 3  VQWALIFGILFALIVAVFAVINVDPVTVNYVFGESEWPLILVILGSVLMGGLIVGLVGVF 62

Query: 61 RQYKLQKQIKGLTAELNKLRDAGNSLDAVSANPDS 95
          R + LQ++++ L  E N    AG   ++  A  DS
Sbjct: 63 RVFALQRKVRSLEKE-NAALKAGADKESAEAAADS 96


>B4ALW2.1 B4ALW2_BACPU Putative uncharacterized protein
          Length = 117

 Score = 80.9 bits (198), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 54/74 (72%)

Query: 2  QWSLILGLIFALLTAVFAVINVDPVEVNFYFDVVSIPLILVILGCALIGGVIVGSYGIFR 61
          QW++IL  IF L+ +VFAVINV PV+V++ F     PLILVI+G  L+GG+IV   GIF+
Sbjct: 5  QWTIILAFIFVLIVSVFAVINVRPVQVDYLFGSAEWPLILVIIGSVLMGGLIVAFAGIFQ 64

Query: 62 QYKLQKQIKGLTAE 75
            KL++++K L AE
Sbjct: 65 IMKLKRELKALKAE 78


>A8FFQ2.1 A8FFQ2_BACP2 Putative uncharacterized protein yrvD
          Length = 117

 Score = 80.9 bits (198), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 54/74 (72%)

Query: 2  QWSLILGLIFALLTAVFAVINVDPVEVNFYFDVVSIPLILVILGCALIGGVIVGSYGIFR 61
          QW++IL  IF L+ +VFAVINV PV+V++ F     PLILVI+G  L+GG+IV   GIF+
Sbjct: 5  QWTIILAFIFVLIVSVFAVINVRPVQVDYLFGSAEWPLILVIIGSVLMGGLIVAFAGIFQ 64

Query: 62 QYKLQKQIKGLTAE 75
            KL++++K L AE
Sbjct: 65 IVKLKRELKALKAE 78


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.324    0.141    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 569,692,559
Number of extensions: 20039357
Number of successful extensions: 84045
Number of sequences better than 1.0e-05: 47
Number of HSP's gapped: 84053
Number of HSP's successfully gapped: 47
Length of query: 104
Length of database: 3,060,696,203
Length adjustment: 72
Effective length of query: 32
Effective length of database: 2,382,383,123
Effective search space: 76236259936
Effective search space used: 76236259936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)