BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0462.0011.p (347 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLB7.1 B3KLB7_9BACI Peptidase M42 family protein 565 e-159 B1DI17.1 B1DI17_9BACL Peptidase M42 family protein 431 e-119 A9KMN3.1 A9KMN3_CLOPH Peptidase M42 family protein 421 e-116 A8MJ65.1 A8MJ65_ALKOO Peptidase M42 family protein 409 e-112 C0FCU0.1 C0FCU0_9CLOT Putative uncharacterized protein 406 e-111 >B3KLB7.1 B3KLB7_9BACI Peptidase M42 family protein Length = 344 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 262/343 (76%), Positives = 304/343 (88%) Query: 2 LTIQPNEAYILSVLKKLLDTPSPSGFTAQVMKLVAEEAAALGIPLSWNEKGGAILTVPGL 61 ++IQPNE Y+L +LK+LLDTPSP+G+T +MK + +EAA+LG+ L WNEKGGAIL+VPG Sbjct: 1 MSIQPNETYVLDLLKELLDTPSPTGYTHDIMKRIEQEAASLGVSLEWNEKGGAILSVPGQ 60 Query: 62 DPARTIGISAHVDTLGAMVRSIKPNGTLRLTSVGGFTMNSIENEYCVIHTRTGLTYTGTI 121 D +RT+G+SAHVDTLGAMVR++K GTLRLTSVGG+ MNSIENEYC+IHTR+G YTGTI Sbjct: 61 DGSRTVGLSAHVDTLGAMVRAVKSEGTLRLTSVGGYMMNSIENEYCIIHTRSGKKYTGTI 120 Query: 122 LSSHPSVHVYADARDFKRSEENMEIRIDEVVSTKDDVLKLGIAVGDFISFDARAVITPSG 181 LS+HPSVHVY+DARDFKR E +ME+RIDE+V + +DV KLGI VGDF+SFDARAVITPSG Sbjct: 121 LSTHPSVHVYSDARDFKRQEAHMEVRIDELVESAEDVKKLGIGVGDFVSFDARAVITPSG 180 Query: 182 YIKSRHLDDKASVAALLGLLESMKREGWKPLHNLSLLISNYEEVGHGAAWIPGGISEMIA 241 YIKSRHLDDKASVAAL GLLESMKR+ WKP +N+ LLISNYEEVGHGAA+IP I E+IA Sbjct: 181 YIKSRHLDDKASVAALFGLLESMKRDNWKPAYNVKLLISNYEEVGHGAAYIPADIHELIA 240 Query: 242 VDMGAMGDDLSCKETDVSICAKDSSGPYDYAMTSKLIELANGLAIPFAVDIYPQYGSDAS 301 VDMG +GDDLSCKETDVSICAKDSSGPYDY MTS+LI+LA I +AVD+YP YGSDAS Sbjct: 241 VDMGCIGDDLSCKETDVSICAKDSSGPYDYGMTSRLIQLAESEGIAYAVDVYPHYGSDAS 300 Query: 302 AALRGGNNIRAALIGPGVHASHSMERTHKQAVLNTAKLLAAYV 344 AAL G+NI+AALIGPGVHASH+MERTHKQAVLNT KLLAAYV Sbjct: 301 AALSAGSNIKAALIGPGVHASHAMERTHKQAVLNTVKLLAAYV 343 >B1DI17.1 B1DI17_9BACL Peptidase M42 family protein Length = 353 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 211/331 (63%), Positives = 253/331 (76%), Gaps = 1/331 (0%) Query: 7 NEAYILSVLKKLLDTPSPSGFTAQVMKLVAEEAAALGIPLSWNEKGGAILTVPGL-DPAR 65 N YIL L++LL PSPSG+ +M + EEAA LG + KG ++T+ G + A Sbjct: 10 NRRYILRFLEELLQIPSPSGYCMNIMTRLEEEAAKLGYTMERTPKGNGMITIGGSGNSAD 69 Query: 66 TIGISAHVDTLGAMVRSIKPNGTLRLTSVGGFTMNSIENEYCVIHTRTGLTYTGTILSSH 125 I +AHVDTLGAMVRSIKPNG LR+T +GG+ M ++E EYC++HTR G Y GT+LS+ Sbjct: 70 AIAYTAHVDTLGAMVRSIKPNGMLRITPIGGYNMQTVEGEYCLVHTRDGRQYEGTVLSNK 129 Query: 126 PSVHVYADARDFKRSEENMEIRIDEVVSTKDDVLKLGIAVGDFISFDARAVITPSGYIKS 185 SVHVY+DAR++KR E NMEIRIDE S+K + LGIAVGD +S+D R ITP G++KS Sbjct: 130 TSVHVYSDAREWKRDEANMEIRIDENTSSKSETETLGIAVGDIVSWDPRVRITPLGWVKS 189 Query: 186 RHLDDKASVAALLGLLESMKREGWKPLHNLSLLISNYEEVGHGAAWIPGGISEMIAVDMG 245 RHLDDKASVAAL GLLE MKR KP L L+ S YEEVGHG +++P I+E+IAVDMG Sbjct: 190 RHLDDKASVAALFGLLEWMKRVDKKPERTLKLIFSTYEEVGHGNSYMPADITELIAVDMG 249 Query: 246 AMGDDLSCKETDVSICAKDSSGPYDYAMTSKLIELANGLAIPFAVDIYPQYGSDASAALR 305 A+GDDLS E DVSICAKDSSGPYDY MTSKLIELA +P+AVDIYP YGSDASAALR Sbjct: 250 AIGDDLSTTERDVSICAKDSSGPYDYEMTSKLIELAKLHQLPYAVDIYPHYGSDASAALR 309 Query: 306 GGNNIRAALIGPGVHASHSMERTHKQAVLNT 336 GG+NIRAALIGPGVHASH+MERTH A++NT Sbjct: 310 GGSNIRAALIGPGVHASHAMERTHADAIVNT 340 >A9KMN3.1 A9KMN3_CLOPH Peptidase M42 family protein Length = 340 Score = 421 bits (1083), Expect = e-116, Method: Compositional matrix adjust. Identities = 208/338 (61%), Positives = 249/338 (73%), Gaps = 1/338 (0%) Query: 8 EAYILSVLKKLLDTPSPSGFTAQVMKLVAEEAAALGIPLSWNEKGGAILTVPGLDPARTI 67 + YI+ L+ L++ PSPSGFT +VM+ V EA + ++GG I+TVPG + + Sbjct: 4 KEYIIKTLETLVNIPSPSGFTKEVMEFVEREANKYHYSCEYIKRGGLIITVPG-ESNDCL 62 Query: 68 GISAHVDTLGAMVRSIKPNGTLRLTSVGGFTMNSIENEYCVIHTRTGLTYTGTILSSHPS 127 G+SAHVDTLGAMVRSI +G +R T VGG+TMNSIE EYC IHTR G YTGTILS PS Sbjct: 63 GLSAHVDTLGAMVRSIGGDGIIRFTCVGGYTMNSIEGEYCKIHTREGKVYTGTILSKSPS 122 Query: 128 VHVYADARDFKRSEENMEIRIDEVVSTKDDVLKLGIAVGDFISFDARAVITPSGYIKSRH 187 VH Y DAR +R + NMEIRIDE V K+DVL LGI GD+ISFDAR T SG+IKSRH Sbjct: 123 VHSYDDARTLERKDRNMEIRIDEKVENKEDVLNLGINNGDYISFDARFEYTKSGFIKSRH 182 Query: 188 LDDKASVAALLGLLESMKREGWKPLHNLSLLISNYEEVGHGAAWIPGGISEMIAVDMGAM 247 LDDKASVA LLGLL+ + + P L +LISN EE+G GA++IP ISE IAVDMGA+ Sbjct: 183 LDDKASVAVLLGLLKDLSEQNVTPKRTLKILISNLEEIGMGASYIPSEISEFIAVDMGAI 242 Query: 248 GDDLSCKETDVSICAKDSSGPYDYAMTSKLIELANGLAIPFAVDIYPQYGSDASAALRGG 307 GDDL+ E VSICA DSSGPYDY +T+KL+ LA IP+ VDI+P YGSDASAA+RGG Sbjct: 243 GDDLAGNEYSVSICALDSSGPYDYELTTKLMNLAKDKQIPYVVDIFPHYGSDASAAMRGG 302 Query: 308 NNIRAALIGPGVHASHSMERTHKQAVLNTAKLLAAYVG 345 NNIRAALIG G+HASH MERTH+ A++ T LL YVG Sbjct: 303 NNIRAALIGQGIHASHGMERTHETALIATLDLLKVYVG 340 >A8MJ65.1 A8MJ65_ALKOO Peptidase M42 family protein Length = 345 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 203/343 (59%), Positives = 242/343 (70%) Query: 2 LTIQPNEAYILSVLKKLLDTPSPSGFTAQVMKLVAEEAAALGIPLSWNEKGGAILTVPGL 61 + I N+ Y+L K+LL+ SPSGF ++M+ + A G KG I+T+PG Sbjct: 1 MEISINKEYVLEKAKQLLELDSPSGFCFEIMERIGTWVEAFGYNFETTNKGCGIVTIPGE 60 Query: 62 DPARTIGISAHVDTLGAMVRSIKPNGTLRLTSVGGFTMNSIENEYCVIHTRTGLTYTGTI 121 R IG+SAHVDTLGAMVRSI +GTLR T +GG + +++ EYC I TR G YTGT Sbjct: 61 SNERVIGLSAHVDTLGAMVRSITSSGTLRFTLIGGPIVPTLDAEYCKIRTRDGKIYTGTF 120 Query: 122 LSSHPSVHVYADARDFKRSEENMEIRIDEVVSTKDDVLKLGIAVGDFISFDARAVITPSG 181 LS+ PS HV+ D+ KR +NMEIRIDEVV K+DV KLGI+VGDF+ DA+ IT SG Sbjct: 121 LSTSPSSHVFEDSSSKKRDADNMEIRIDEVVKCKEDVEKLGISVGDFVFIDAKTTITESG 180 Query: 182 YIKSRHLDDKASVAALLGLLESMKREGWKPLHNLSLLISNYEEVGHGAAWIPGGISEMIA 241 +IKSR +DDK SVA L+ LLE MKRE P + +LIS YEEVGHGA++IP I+EMIA Sbjct: 181 FIKSRFIDDKGSVACLISLLELMKRENIVPKYTTKILISTYEEVGHGASYIPADITEMIA 240 Query: 242 VDMGAMGDDLSCKETDVSICAKDSSGPYDYAMTSKLIELANGLAIPFAVDIYPQYGSDAS 301 VDMG +G DLSC E DVSICAKDS GPYDY MT+ LI LA + FAVDIYP YGSD Sbjct: 241 VDMGCIGSDLSCSEYDVSICAKDSGGPYDYHMTTDLIHLAKENNVNFAVDIYPMYGSDVV 300 Query: 302 AALRGGNNIRAALIGPGVHASHSMERTHKQAVLNTAKLLAAYV 344 AALRGGNNIR ALIGPGVHASH MERTH A+ NT KLL Y+ Sbjct: 301 AALRGGNNIRGALIGPGVHASHGMERTHYTALENTIKLLYLYL 343 >C0FCU0.1 C0FCU0_9CLOT Putative uncharacterized protein Length = 364 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 192/336 (57%), Positives = 244/336 (72%), Gaps = 1/336 (0%) Query: 10 YILSVLKKLLDTPSPSGFTAQVMKLVAEEAAALGIPLSWNEKGGAILTVPGLDPARTIGI 69 YIL L+K+++TPSPSG T +VM++V EA G +N KGG I+TVPG + Sbjct: 6 YILDTLEKIVNTPSPSGCTGKVMEIVRREAEGFGFQTEYNRKGGLIITVPG-QTETVVAF 64 Query: 70 SAHVDTLGAMVRSIKPNGTLRLTSVGGFTMNSIENEYCVIHTRTGLTYTGTILSSHPSVH 129 S HVDTLGAMVRS++ GTL T VGG M +IE YC I TR G +TGTI ++ PSVH Sbjct: 65 SGHVDTLGAMVRSVRAGGTLAFTQVGGMMMEAIEGSYCKILTRDGREFTGTIQTTQPSVH 124 Query: 130 VYADARDFKRSEENMEIRIDEVVSTKDDVLKLGIAVGDFISFDARAVITPSGYIKSRHLD 189 V+ R+ KR+EENMEIR+DE+V T +DV KLGI GDF+SFD + V+T G++KSRH+D Sbjct: 125 VWDGCRELKRTEENMEIRLDEIVRTAEDVEKLGIGAGDFVSFDPKFVVTERGFVKSRHMD 184 Query: 190 DKASVAALLGLLESMKREGWKPLHNLSLLISNYEEVGHGAAWIPGGISEMIAVDMGAMGD 249 DKASVA +LG+L+ + G KP+ L +LISNYEEVGHG ++IP + E+I+VDMG +GD Sbjct: 185 DKASVAVILGVLKYIHDTGKKPVQTLKMLISNYEEVGHGCSYIPEDVEELISVDMGCVGD 244 Query: 250 DLSCKETDVSICAKDSSGPYDYAMTSKLIELANGLAIPFAVDIYPQYGSDASAALRGGNN 309 DL+ E VSICAKDSSGPYD+ MT++LI LA I + VDI+P YGSD SAAL+GGNN Sbjct: 245 DLNGDEYRVSICAKDSSGPYDFDMTNRLISLAKEYGIGYTVDIFPHYGSDVSAALKGGNN 304 Query: 310 IRAALIGPGVHASHSMERTHKQAVLNTAKLLAAYVG 345 IR ALIG GV ASH ERTH + ++ T +L+AAY G Sbjct: 305 IRGALIGQGVSASHGQERTHVRGLMETFRLIAAYAG 340 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.133 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,065,714,462 Number of extensions: 86223793 Number of successful extensions: 215202 Number of sequences better than 1.0e-05: 858 Number of HSP's gapped: 214541 Number of HSP's successfully gapped: 858 Length of query: 347 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 211 Effective length of database: 1,779,438,163 Effective search space: 375461452393 Effective search space used: 375461452393 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)