BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0462.0009.p
         (163 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0ZBJ3.1 C0ZBJ3_BREBN Putative uncharacterized protein                 64   4e-09

>C0ZBJ3.1 C0ZBJ3_BREBN Putative uncharacterized protein
          Length = 178

 Score = 63.9 bits (154), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 9/158 (5%)

Query: 9   RELKAFIATAETAWFNVYDSADINRVITVGGVEYKQLPLRFSTKAKVIAYFRRYWGVDMS 68
           + LK FI +AE  W  + +S     V TV GV+Y  LP +++TK K+   FRRYWG  ++
Sbjct: 8   QRLKQFITSAEHVWTQIANSPRGKPVYTVNGVDYTPLPEKYNTKRKISRIFRRYWGKQLT 67

Query: 69  NRMFCNLQTVSRNNRLYVIVGDTGLVSFIPLRIRVTERTATRIRLTAVLSADEIEEVETE 128
             M  NL       +L +   D        L +++         + A+LS       +  
Sbjct: 68  EVMIRNLHLRMLKGKLCIPYRDIPTFPATVLSLQIKVNLPDHRTVAAILSGGG----KKT 123

Query: 129 NVRYLIAKSGT--ALRILNRDKKNTDPRYQ---TCPLN 161
            V Y + + G      I+ R  +  D RYQ   T PLN
Sbjct: 124 RVDYRLIRVGATKTFTIMKRSGEQFDLRYQSLATIPLN 161


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 829,380,418
Number of extensions: 28500017
Number of successful extensions: 63386
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 63386
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 3,060,696,203
Length adjustment: 123
Effective length of query: 40
Effective length of database: 1,901,911,358
Effective search space: 76076454320
Effective search space used: 76076454320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)