BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0462.0008.p (163 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KCV1.1 B3KCV1_9BACI TPR repeat-containing protein 170 4e-41 B1DLH6.1 B1DLH6_9BACL Tetratricopeptide TPR_2 repeat protein 167 3e-40 Q2BEF5.1 Q2BEF5_9BACI Putative uncharacterized protein 160 3e-38 A8FII4.1 A8FII4_BACP2 Putative uncharacterized protein 151 2e-35 B4AJF4.1 B4AJF4_BACPU Tetratricopeptide repeat domain 151 2e-35 >B3KCV1.1 B3KCV1_9BACI TPR repeat-containing protein Length = 160 Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 81/158 (51%), Positives = 114/158 (72%) Query: 6 SIETAVALRNAGKXXXXXXXXXXXXSGDEENAGLLYQLAWTHDVLGLEREAVPYYERSLS 65 +I+ A+ LR GK ++ + YQLAW HD++GLE EAVPYYE+++S Sbjct: 3 TIQQAIELRAEGKPEEAKTILLELLPQSPDDPDIHYQLAWVHDMMGLESEAVPYYEKAIS 62 Query: 66 LGLPPEQRMGAILGLGSTYRTLGEYPRSKEVLEQGVGEFPQQKEFQAFLAMTLHNLGEHS 125 LGL +R GA+LGLGSTYRTLG Y +SK++ EQG+ E+P +EF+ F AMTL+NL ++ Sbjct: 63 LGLKDPERCGALLGLGSTYRTLGMYGKSKDIFEQGLREYPGAREFRVFYAMTLYNLRQYD 122 Query: 126 EAMKLLLTLVAETSSDEGIGSYRKAILYYSDKLEQVWE 163 +AM+LLL ++ETS+DEG SY++AI +YSDKL+QVW+ Sbjct: 123 KAMELLLREISETSNDEGTRSYQRAIAFYSDKLDQVWK 160 >B1DLH6.1 B1DLH6_9BACL Tetratricopeptide TPR_2 repeat protein Length = 166 Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 81/160 (50%), Positives = 106/160 (66%) Query: 4 THSIETAVALRNAGKXXXXXXXXXXXXSGDEENAGLLYQLAWTHDVLGLEREAVPYYERS 63 + +E AV LR AG+ N + YQ AW HD +GLEREAVP+Y++S Sbjct: 7 VNELEIAVQLREAGQLEESRSMLLALVERYPGNPSVWYQCAWVHDSMGLEREAVPFYQKS 66 Query: 64 LSLGLPPEQRMGAILGLGSTYRTLGEYPRSKEVLEQGVGEFPQQKEFQAFLAMTLHNLGE 123 + LGL E R GA LGLGSTYRTLG Y ++ V + + E+P +EFQ F AM L+NL E Sbjct: 67 IELGLSGEDRQGAYLGLGSTYRTLGMYAEARSVFREAIEEYPDNREFQVFYAMVLYNLEE 126 Query: 124 HSEAMKLLLTLVAETSSDEGIGSYRKAILYYSDKLEQVWE 163 HS AM++LL +AETS D+GI SYRKA+L+Y+DKL+Q W+ Sbjct: 127 HSAAMEILLNQLAETSGDQGIQSYRKALLFYADKLDQRWD 166 >Q2BEF5.1 Q2BEF5_9BACI Putative uncharacterized protein Length = 160 Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 79/157 (50%), Positives = 107/157 (68%) Query: 7 IETAVALRNAGKXXXXXXXXXXXXSGDEENAGLLYQLAWTHDVLGLEREAVPYYERSLSL 66 +E A+ LR +G+ + +A + YQ AW+ D+LG E +A PYYER++SL Sbjct: 4 LEFAINLRGSGELKKSNLILKKLADRNPSDALISYQTAWSFDLLGEEADAAPYYERAISL 63 Query: 67 GLPPEQRMGAILGLGSTYRTLGEYPRSKEVLEQGVGEFPQQKEFQAFLAMTLHNLGEHSE 126 GLP ++ GA+LGLGSTYRTLGEY +++ LE+G+ FP + F +M L+NLG H E Sbjct: 64 GLPDKELEGALLGLGSTYRTLGEYQKARYTLEKGMERFPDNRAMSVFYSMVLYNLGSHGE 123 Query: 127 AMKLLLTLVAETSSDEGIGSYRKAILYYSDKLEQVWE 163 AM LLL +AETSSDEGI YRKAIL+Y+DKL+ VW+ Sbjct: 124 AMGLLLESLAETSSDEGIHQYRKAILFYADKLDTVWK 160 >A8FII4.1 A8FII4_BACP2 Putative uncharacterized protein Length = 177 Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 73/161 (45%), Positives = 107/161 (66%) Query: 3 MTHSIETAVALRNAGKXXXXXXXXXXXXSGDEENAGLLYQLAWTHDVLGLEREAVPYYER 62 M +E A+ LR +G ++A + YQ AW++D+LG ER+AV +YER Sbjct: 17 METKLEKAIELRKSGHLQESNEMLSHLVEKYPDDASIHYQCAWSYDLLGEERQAVFFYER 76 Query: 63 SLSLGLPPEQRMGAILGLGSTYRTLGEYPRSKEVLEQGVGEFPQQKEFQAFLAMTLHNLG 122 ++ LGL E+ A+LGLGSTYRTLGEY +SK + +G+ +P K Q F AMTL+NL Sbjct: 77 AIELGLSSEELEDALLGLGSTYRTLGEYEKSKRIFLRGIETYPDNKAIQTFYAMTLYNLK 136 Query: 123 EHSEAMKLLLTLVAETSSDEGIGSYRKAILYYSDKLEQVWE 163 EHS+AM++LL + ET++D I SYRKAI +YS++L+++W+ Sbjct: 137 EHSKAMEMLLNCLTETTTDPTILSYRKAIDFYSNQLDKLWK 177 >B4AJF4.1 B4AJF4_BACPU Tetratricopeptide repeat domain Length = 161 Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 73/161 (45%), Positives = 107/161 (66%) Query: 3 MTHSIETAVALRNAGKXXXXXXXXXXXXSGDEENAGLLYQLAWTHDVLGLEREAVPYYER 62 M +E A+ LR +G ++A + YQ AW++D+LG ER+AV +YER Sbjct: 1 METKLEKAIELRKSGHLQESNKMLSYLVEKYPDDASIHYQCAWSYDLLGEERQAVFFYER 60 Query: 63 SLSLGLPPEQRMGAILGLGSTYRTLGEYPRSKEVLEQGVGEFPQQKEFQAFLAMTLHNLG 122 ++ LGL E+ A+LGLGSTYRTLGEY +SK++ +G+ +P K Q F AMTL+NL Sbjct: 61 AIELGLSSEELEDALLGLGSTYRTLGEYEKSKQIFLKGMETYPDNKAIQTFYAMTLYNLK 120 Query: 123 EHSEAMKLLLTLVAETSSDEGIGSYRKAILYYSDKLEQVWE 163 EHS+AM++LL + ET+ D I SYRKAI +YS++L+++W+ Sbjct: 121 EHSKAMEILLNCLTETTKDPAILSYRKAIDFYSNQLDRLWK 161 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.132 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 881,347,491 Number of extensions: 33768290 Number of successful extensions: 59056 Number of sequences better than 1.0e-05: 152 Number of HSP's gapped: 59110 Number of HSP's successfully gapped: 152 Length of query: 163 Length of database: 3,060,696,203 Length adjustment: 123 Effective length of query: 40 Effective length of database: 1,901,911,358 Effective search space: 76076454320 Effective search space used: 76076454320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 125 (52.8 bits)