BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0462.0005.p (273 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLB5.1 B3KLB5_9BACI Putative uncharacterized protein 217 1e-54 C0Z979.1 C0Z979_BREBN Hypothetical membrane protein 190 1e-46 B1DL21.1 B1DL21_9BACL Putative uncharacterized protein 134 8e-30 B8CWB4.1 B8CWB4_HALOH Putative uncharacterized protein 122 5e-26 B0THQ5.1 B0THQ5_HELMI Putative uncharacterized protein 112 5e-23 >B3KLB5.1 B3KLB5_9BACI Putative uncharacterized protein Length = 268 Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 119/232 (51%), Positives = 135/232 (58%), Gaps = 1/232 (0%) Query: 25 YYKQSLSFSGMLAAIAMGTIYFGAGNAFWFGXXXXXXXXXXXXXKLHHENKAELEAAYDK 84 Y K+SLS SG LAAI MGTIY+GAGNAFWFG + + KA+LE +Y K Sbjct: 18 YRKRSLSESGALAAILMGTIYYGAGNAFWFGTLLLFFITSTLLSRYGKQRKADLEKSYAK 77 Query: 85 TGRRDAGQVFANXXXXXXXXXXNAIYPLELWGYLFIGVMATVTSDTWATEIGTLAKKPPR 144 TGRRDAGQV AN N P LW YLFIGVMATVT+DTWATE+G+L++KPPR Sbjct: 78 TGRRDAGQVLANGGIGMVLCLLNVWIPSHLWVYLFIGVMATVTADTWATEVGSLSRKPPR 137 Query: 145 SVLTGRILPPGTSGGVSXXXXXXXXXXXXXXXXXSWLLRAASGMPEHPXXXXXXXXXXXX 204 SVL GR+L G SGGVS WLL SGM P Sbjct: 138 SVLNGRVLTAGESGGVSWVGSAAAAAGSMLIGAGGWLLAEWSGMNADP-LPYVLAALAGG 196 Query: 205 XXXXXXDSVLGATVQRMNRCTVCGREVEASRHCGQPTVFARGWRWMNNDAVN 256 DS LGAT+Q M RC CG+ VE SRHCGQ TV RG+ WM+NDAVN Sbjct: 197 LVGAFADSYLGATMQVMYRCPACGKSVEVSRHCGQDTVRMRGYAWMSNDAVN 248 >C0Z979.1 C0Z979_BREBN Hypothetical membrane protein Length = 280 Score = 190 bits (482), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 106/256 (41%), Positives = 133/256 (51%), Gaps = 7/256 (2%) Query: 8 LQWVIXXXXXXXXXXXXYYKQSLSFSGMLAAIAMGTIYFGAGNAFWFGXXXXXXXXXXXX 67 + W+I Y K+SLS SG LAA+ +GT+ + G+ WFG Sbjct: 1 MAWLIGLACSAGIAGAAYVKRSLSGSGFLAAVIVGTVMYALGSPIWFGSLIAFFVSSTLL 60 Query: 68 XKLHHENKAELEAAYDKTGRRDAGQVFANXXXXXXXXXXNAIYPLELWGYLFIGVMATVT 127 K K E E+ Y+KTGRRDAGQV AN N +P LW Y F+GVMA VT Sbjct: 61 SKWKKHKKEEAESGYEKTGRRDAGQVLANGGLGLLLCMANWAWPHPLWWYAFLGVMAAVT 120 Query: 128 SDTWATEIGTLAKKPPRSVLTGRILPPGTSGGVSXXXXXXXXXXXXXXXXXSWLLRAASG 187 +DTWATEIG L++KPPRS+ TG+ +PPGTSGGVS +WLL A +G Sbjct: 121 ADTWATEIGGLSRKPPRSIKTGQRVPPGTSGGVSSLGMGASLAGGLFIGGTAWLLLAVAG 180 Query: 188 MPEHPXXXXXXXXXX-------XXXXXXXXDSVLGATVQRMNRCTVCGREVEASRHCGQP 240 P DS +GAT Q+M RC+VCGRE+E +RHCG+P Sbjct: 181 HPAPDVITPALRLAAWIGIAGLAGLVGSLVDSWIGATWQQMYRCSVCGREIEQARHCGKP 240 Query: 241 TVFARGWRWMNNDAVN 256 + RG NNDAVN Sbjct: 241 AIRIRGRAGWNNDAVN 256 >B1DL21.1 B1DL21_9BACL Putative uncharacterized protein Length = 285 Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 90/244 (36%), Positives = 113/244 (46%), Gaps = 15/244 (6%) Query: 25 YYKQSLSFSGMLAAIAMGTIYFGAGNAFWFGXXXXXXXXXX--XXXKLHHENKAELEAAY 82 Y +SLS SG +A+ MGT + G WFG K H KA EA Y Sbjct: 27 YRTRSLSGSGAWSAMIMGTGFVTLGEPVWFGCLIAFFVSSTIWSKWKKRHRAKAAAEANY 86 Query: 83 DKTGRRDAGQVFANXXXXXXXXXXNAIYPLELWGYLFIGVMATVTSDTWATEIGTLAKKP 142 +KTGRRDAGQV+AN NA++P W + +IGVMA V +DTWATEIG L++ Sbjct: 87 EKTGRRDAGQVWANGGIGLFLCAGNALWPDTAWLFAYIGVMAAVNADTWATEIGALSRTA 146 Query: 143 PRSVLTGRILPPGTSGGVSXXXXXXXXXXXXXXXXXSWLLRAASGMPEHPXXXXXXXXXX 202 PRS+ TG+ + PGTSG ++ S L A +P+ Sbjct: 147 PRSITTGKRVKPGTSGAITPLGTLAALAGAAFIGGVSAALLA---LPQQADAAAGSAPGG 203 Query: 203 XXXXXXX----------XDSVLGATVQRMNRCTVCGREVEASRHCGQPTVFARGWRWMNN 252 DS+LGAT Q M RC VCG E E + HC RG +NN Sbjct: 204 AAAVVIAAAAAGLAGCFADSLLGATGQAMYRCRVCGSETERAVHCRTAAERVRGLAALNN 263 Query: 253 DAVN 256 D VN Sbjct: 264 DRVN 267 >B8CWB4.1 B8CWB4_HALOH Putative uncharacterized protein Length = 281 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 104/235 (44%), Gaps = 3/235 (1%) Query: 25 YYKQSLSFSGMLAAIAMGTIYFGAGNAFWFGXXXXXXXXXXXXXKLHHENKAELEAAYDK 84 Y K SLS SG++ AI +GTI FG G WF K + + K Sbjct: 28 YKKNSLSKSGIMGAILVGTIIFGCGGFTWFILLGAFFVSSSLLSHFKIRQKKTIAREFQK 87 Query: 85 TGRRDAGQVFANXXXXXXXXXXNAI--YPLELWGYLFIGVMATVTSDTWATEIGTLAKKP 142 TG+RD GQ AN + YP Y ++GV+ATV +DTWATE+G L+K P Sbjct: 88 TGQRDLGQTLANGGIGIILACLKVLNHYPATTLFYAYLGVIATVNADTWATELGVLSKTP 147 Query: 143 PRSVLTGRILPPGTSGGVSXXXXXXXXXXXXXXXXXSWLLRAASGMPEHPXXXXXXXXXX 202 PR + + + + GTSGGV+ ++ + + Sbjct: 148 PRLITSFKKVARGTSGGVTWLGLTSSLAGGFFIGFIAFCSISLLKGFINKNFMYILISIS 207 Query: 203 XXXXXXXXDSVLGATVQRMNRCTVCGREVEASRH-CGQPTVFARGWRWMNNDAVN 256 DS+LGAT Q + C C +E E H CGQ T RG+ W+NND VN Sbjct: 208 GGLAGSLTDSLLGATYQGIYYCPCCEKETERLIHYCGQKTRLIRGFTWLNNDLVN 262 >B0THQ5.1 B0THQ5_HELMI Putative uncharacterized protein Length = 506 Score = 112 bits (279), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 107/241 (44%), Gaps = 9/241 (3%) Query: 25 YYKQSLSFSGMLAAIAMGTIYFGAGNAFWFGXXXXXXXXXXXXXKLHHENKAEL-EAAYD 83 Y+++SLS SG+ A+ +GT+ FG G W K K + E +D Sbjct: 247 YWRRSLSGSGVAGAVIVGTLIFGFGGWVWGLTLIAFFFYGSALSKYKEAQKNVVAEEKFD 306 Query: 84 KTGRRDAGQVFANXXXXXXXXXXNAIYPLE-LWGYLFIGVMATVTSDTWATEIGTLAKKP 142 K RRD GQ AN + ++P E + FIG MATV +DTWATEIG L+++P Sbjct: 307 KGSRRDLGQALANGGFGSLLAVLHFLFPSEPAFFAAFIGTMATVNADTWATEIGVLSRRP 366 Query: 143 PRSVLTGRILPPGTSGGVSXXXXXXXXXXXXXXXXXSWLLRAASGMPEHPXXXXXX---- 198 PR + TGR++PPGTSGG++ W+ + Sbjct: 367 PRLITTGRLVPPGTSGGITAVGTIATMMGGLLIGLTVWIFVGIQDVIMLGVVNLADYLWI 426 Query: 199 --XXXXXXXXXXXXDSVLGATVQRMNRCTVCGREVEAS-RHCGQPTVFARGWRWMNNDAV 255 DS+LGATVQ + G+E E G F+RG +M+ND V Sbjct: 427 LPAAVAGGLGGSLFDSLLGATVQAIYVNAETGKETEKKVSRSGAKNRFSRGLLFMDNDMV 486 Query: 256 N 256 N Sbjct: 487 N 487 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.135 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,117,779,476 Number of extensions: 31262558 Number of successful extensions: 56740 Number of sequences better than 1.0e-05: 46 Number of HSP's gapped: 56749 Number of HSP's successfully gapped: 53 Length of query: 273 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 139 Effective length of database: 1,798,280,193 Effective search space: 249960946827 Effective search space used: 249960946827 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)