BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0462.0001.p (333 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLB2.1 B3KLB2_9BACI Putative uncharacterized protein 192 5e-47 C0ZG22.1 C0ZG22_BREBN Putative uncharacterized protein 172 4e-41 B1DL23.1 B1DL23_9BACL Putative uncharacterized protein 149 3e-34 B9M3E1.1 B9M3E1_GEOSF Poly-gamma-glutamate biosynthesis protein 120 2e-25 Q4MUP9.1 Q4MUP9_BACCE CapA protein, putative 120 2e-25 >B3KLB2.1 B3KLB2_9BACI Putative uncharacterized protein Length = 439 Score = 192 bits (487), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 91/147 (61%), Positives = 112/147 (76%) Query: 170 VKLNFAGDVIFSGKAGQLLKQKGYDYSYAALDGIFKKDDLTVLNLETPITTGGVGAANKQ 229 V ++FAGD +FSGK LK+ GYDY Y L F +DDLTVLNLETP+TTGGVGAANK+ Sbjct: 122 VVMHFAGDTLFSGKVEAELKKHGYDYPYKHLGTAFLEDDLTVLNLETPVTTGGVGAANKK 181 Query: 230 FVFKGEPKALDSMKAAGVDAVNLANNHTLDQGEEGLLDTLEHLNKRGIPYVGGGVDAAEA 289 FVFK P L +++ AGV+AVNLANNH LDQG+EGLLDTL+HL I YVG G + EA Sbjct: 182 FVFKSSPDVLPALRDAGVEAVNLANNHILDQGQEGLLDTLKHLKDHDIRYVGAGRNEEEA 241 Query: 290 YSAKYFERNGIRIALLGFTRVMPVMEW 316 ++A+YFER G+ +ALLGF+RV+P W Sbjct: 242 FAAQYFERQGMTVALLGFSRVLPETTW 268 >C0ZG22.1 C0ZG22_BREBN Putative uncharacterized protein Length = 389 Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 79/156 (50%), Positives = 107/156 (68%) Query: 165 NAGTTVKLNFAGDVIFSGKAGQLLKQKGYDYSYAALDGIFKKDDLTVLNLETPITTGGVG 224 N ++V+L F GD++ SG + L YDY Y + +F +DD+T+ NLETPIT GV Sbjct: 66 NQKSSVQLTFVGDIMMSGNVEKTLLANSYDYPYKHVSSLFLQDDITIANLETPITDTGVA 125 Query: 225 AANKQFVFKGEPKALDSMKAAGVDAVNLANNHTLDQGEEGLLDTLEHLNKRGIPYVGGGV 284 A NK++V+K P A+ +MK AG+D VNLANNH++DQG GLLDT E L++ I YVG G Sbjct: 126 AQNKEYVYKSSPLAVPAMKNAGIDVVNLANNHSMDQGVPGLLDTFEALDENRIEYVGAGK 185 Query: 285 DAAEAYSAKYFERNGIRIALLGFTRVMPVMEWKGGG 320 DA+ AYS + E+NGI+IA+LGF+RV+P W G Sbjct: 186 DASRAYSPVFLEKNGIKIAILGFSRVIPETSWFAGN 221 >B1DL23.1 B1DL23_9BACL Putative uncharacterized protein Length = 450 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 75/149 (50%), Positives = 99/149 (66%) Query: 169 TVKLNFAGDVIFSGKAGQLLKQKGYDYSYAALDGIFKKDDLTVLNLETPITTGGVGAANK 228 TV L F GD++ + G ++KQ G DY Y + DLT NLE P+T GV A +K Sbjct: 139 TVSLAFVGDILLAESVGDMMKQYGDDYPYKEALFHLSEPDLTAANLEYPVTNRGVPAEDK 198 Query: 229 QFVFKGEPKALDSMKAAGVDAVNLANNHTLDQGEEGLLDTLEHLNKRGIPYVGGGVDAAE 288 QFVFKG+ AL ++K +G+D V LANNHTLDQG EGLLDT+ HLNK GI +VG G + E Sbjct: 199 QFVFKGDAGALPALKDSGIDIVTLANNHTLDQGIEGLLDTMTHLNKAGINHVGAGKNDTE 258 Query: 289 AYSAKYFERNGIRIALLGFTRVMPVMEWK 317 A++ E NGI++A +G +RV+P +WK Sbjct: 259 AFAPVIKEANGIKVAYIGVSRVVPTGDWK 287 >B9M3E1.1 B9M3E1_GEOSF Poly-gamma-glutamate biosynthesis protein Length = 351 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 62/143 (43%), Positives = 87/143 (60%) Query: 170 VKLNFAGDVIFSGKAGQLLKQKGYDYSYAALDGIFKKDDLTVLNLETPITTGGVGAANKQ 229 V +N GD++ +GK G L++ GYDY +AA K DL + NLETPIT+GG+ +K Sbjct: 25 VVINAVGDIMLAGKGGAALERMGYDYPFAATVAALKAGDLAMGNLETPITSGGLEFKDKS 84 Query: 230 FVFKGEPKALDSMKAAGVDAVNLANNHTLDQGEEGLLDTLEHLNKRGIPYVGGGVDAAEA 289 + FK P+A ++K AG + +ANNH LD G +GLLDT+ HL+K+GI + G G EA Sbjct: 85 YRFKAVPQAAAALKRAGFRVLTMANNHMLDYGTDGLLDTIYHLDKQGIKHSGAGKSLTEA 144 Query: 290 YSAKYFERNGIRIALLGFTRVMP 312 + NG RIA L ++ P Sbjct: 145 RREAIIDCNGNRIAFLSYSLTYP 167 >Q4MUP9.1 Q4MUP9_BACCE CapA protein, putative Length = 367 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 57/150 (38%), Positives = 85/150 (56%) Query: 170 VKLNFAGDVIFSGKAGQLLKQKGYDYSYAALDGIFKKDDLTVLNLETPITTGGVGAANKQ 229 + L F+GD +F + ++++ G DY + + KK D++ +NLE+ TT A + Sbjct: 56 ITLTFSGDTMFDWQLRPVIEKNGADYPFQHVKEEIKKADISFVNLESAFTTREKKAPGQL 115 Query: 230 FVFKGEPKALDSMKAAGVDAVNLANNHTLDQGEEGLLDTLEHLNKRGIPYVGGGVDAAEA 289 F K +P L ++K G D VN+ NNHTLD G+EGLLDT+ H+ K PY+G G +A +A Sbjct: 116 FWIKSDPSTLQAIKNTGYDIVNIGNNHTLDYGQEGLLDTISHVEKLKFPYIGAGKNAKDA 175 Query: 290 YSAKYFERNGIRIALLGFTRVMPVMEWKGG 319 Y+A+ G + L F R MP W G Sbjct: 176 YTAREMTVKGKKFKFLSFVRFMPDTNWVAG 205 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,723,396,547 Number of extensions: 67265064 Number of successful extensions: 133833 Number of sequences better than 1.0e-05: 397 Number of HSP's gapped: 133780 Number of HSP's successfully gapped: 397 Length of query: 333 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 197 Effective length of database: 1,779,438,163 Effective search space: 350549318111 Effective search space used: 350549318111 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)