BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0459.0030.p (215 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B7GMP2.1 B7GMP2_ANOFW ABC-type glutamine transport system, perme... 257 6e-67 C3IZE1.1 C3IZE1_9BACI Polar amino acid ABC transporter, inner me... 254 3e-66 B7Y750.1 B7Y750_9BACI Polar amino acid ABC transporter, inner me... 254 3e-66 A4ITR9.1 A4ITR9_GEOTN Amino acid ABC transporter (Permease) 240 6e-62 B4BPF1.1 B4BPF1_9BACI Polar amino acid ABC transporter, inner me... 240 6e-62 >B7GMP2.1 B7GMP2_ANOFW ABC-type glutamine transport system, permease component Length = 218 Score = 257 bits (656), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 125/214 (58%), Positives = 152/214 (71%) Query: 1 MDIRFDIIAHYLPVLLRGTAFTXXXXXXXXXXXXXXXXXXXFGKMAPKAYFRWPFHCYIN 60 MD RF+II Y P L+G +T GKM R PF Y++ Sbjct: 2 MDFRFNIIVEYAPFFLKGVLWTIGLSLIGILFGTILGLAIGLGKMVQNRLVRLPFDWYVH 61 Query: 61 FFRGTPLYVQILIVHFGVIPAFYGSTNVLMTSFVALSLNSAAYSAEIFRAGIQSIDPGQR 120 FFRGTPL+VQIL++HFGV+P F N L++ ++LSLN+AAY AEIFRAGIQSID GQ Sbjct: 62 FFRGTPLFVQILLIHFGVMPMFTAQPNPLVSGAISLSLNAAAYIAEIFRAGIQSIDRGQM 121 Query: 121 EAAVSLGMTRAQAMRFIILPQAVKRMVPAFGNEFIVLVKDSSLLALIAAPEIMYWSNTMK 180 EAA SLGMT QAMR+IILPQA+KRM+P GNEF+VL+KDSSL A+IAAPE+MYW M+ Sbjct: 122 EAARSLGMTHVQAMRYIILPQAIKRMIPPLGNEFVVLIKDSSLAAIIAAPELMYWGRAMQ 181 Query: 181 GQYLRIWEPYLTAALIYFILTYSLSKLLNYIERK 214 GQY R+WEPYLT ALIY +LT SLSKLL+ +ER+ Sbjct: 182 GQYYRVWEPYLTVALIYLVLTLSLSKLLHRLERR 215 >C3IZE1.1 C3IZE1_9BACI Polar amino acid ABC transporter, inner membrane subunit Length = 218 Score = 254 bits (649), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 130/214 (60%), Positives = 148/214 (69%) Query: 1 MDIRFDIIAHYLPVLLRGTAFTXXXXXXXXXXXXXXXXXXXFGKMAPKAYFRWPFHCYIN 60 MD RFDII Y P +G T GKM+ R PF YIN Sbjct: 1 MDFRFDIIVEYAPYFFQGLLATIGVSLAGIIFGLILGLFIGLGKMSTNLLVRLPFSWYIN 60 Query: 61 FFRGTPLYVQILIVHFGVIPAFYGSTNVLMTSFVALSLNSAAYSAEIFRAGIQSIDPGQR 120 FFRGTPL VQIL+VHFGV+P F+ N +++ V+LSLNSAAY AEIFRAGIQSID GQ Sbjct: 61 FFRGTPLVVQILLVHFGVMPLFFAQPNGIVSLAVSLSLNSAAYVAEIFRAGIQSIDKGQM 120 Query: 121 EAAVSLGMTRAQAMRFIILPQAVKRMVPAFGNEFIVLVKDSSLLALIAAPEIMYWSNTMK 180 EAA SLGMT AQAMR+IILPQA+KRM+P F NEFIVL+KDSSL +IAAPEIMYW Sbjct: 121 EAARSLGMTHAQAMRYIILPQALKRMIPPFANEFIVLIKDSSLGMVIAAPEIMYWGKAAA 180 Query: 181 GQYLRIWEPYLTAALIYFILTYSLSKLLNYIERK 214 G+Y R+WEPYLT A IY ILT SLSKL +Y+ERK Sbjct: 181 GEYYRVWEPYLTVAFIYLILTLSLSKLSHYLERK 214 >B7Y750.1 B7Y750_9BACI Polar amino acid ABC transporter, inner membrane subunit Length = 218 Score = 254 bits (649), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 130/214 (60%), Positives = 148/214 (69%) Query: 1 MDIRFDIIAHYLPVLLRGTAFTXXXXXXXXXXXXXXXXXXXFGKMAPKAYFRWPFHCYIN 60 MD RFDII Y P +G T GKM+ R PF YIN Sbjct: 1 MDFRFDIIVEYAPYFFQGLLATIGVSLAGIIFGLILGLFIGLGKMSTNLLVRLPFSWYIN 60 Query: 61 FFRGTPLYVQILIVHFGVIPAFYGSTNVLMTSFVALSLNSAAYSAEIFRAGIQSIDPGQR 120 FFRGTPL VQIL+VHFGV+P F+ N +++ V+LSLNSAAY AEIFRAGIQSID GQ Sbjct: 61 FFRGTPLVVQILLVHFGVMPLFFAQPNGIVSLAVSLSLNSAAYVAEIFRAGIQSIDKGQM 120 Query: 121 EAAVSLGMTRAQAMRFIILPQAVKRMVPAFGNEFIVLVKDSSLLALIAAPEIMYWSNTMK 180 EAA SLGMT AQAMR+IILPQA+KRM+P F NEFIVL+KDSSL +IAAPEIMYW Sbjct: 121 EAARSLGMTHAQAMRYIILPQALKRMIPPFANEFIVLIKDSSLGMVIAAPEIMYWGKAAA 180 Query: 181 GQYLRIWEPYLTAALIYFILTYSLSKLLNYIERK 214 G+Y R+WEPYLT A IY ILT SLSKL +Y+ERK Sbjct: 181 GEYYRVWEPYLTVAFIYLILTLSLSKLSHYLERK 214 >A4ITR9.1 A4ITR9_GEOTN Amino acid ABC transporter (Permease) Length = 218 Score = 240 bits (613), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 129/214 (60%), Positives = 145/214 (67%) Query: 1 MDIRFDIIAHYLPVLLRGTAFTXXXXXXXXXXXXXXXXXXXFGKMAPKAYFRWPFHCYIN 60 MD RFDII Y P +G T GKM+ R PF YIN Sbjct: 1 MDFRFDIIVEYAPYFWKGLLVTIGVSLAGIVFGLILGLFIGLGKMSRHPLIRLPFTWYIN 60 Query: 61 FFRGTPLYVQILIVHFGVIPAFYGSTNVLMTSFVALSLNSAAYSAEIFRAGIQSIDPGQR 120 FFRGTPL VQIL+VHFG +P N L++ V+LSLNSAAY AEIFRAGIQSID GQ Sbjct: 61 FFRGTPLVVQILLVHFGAMPLLLAEPNALVSLVVSLSLNSAAYVAEIFRAGIQSIDKGQM 120 Query: 121 EAAVSLGMTRAQAMRFIILPQAVKRMVPAFGNEFIVLVKDSSLLALIAAPEIMYWSNTMK 180 EAA SLGMT AQAMR+IILPQA+KRM+P F NEFIVL+KDSSL +IAAPEIMYW Sbjct: 121 EAARSLGMTHAQAMRYIILPQALKRMIPPFANEFIVLIKDSSLGMIIAAPEIMYWGKAAA 180 Query: 181 GQYLRIWEPYLTAALIYFILTYSLSKLLNYIERK 214 G+Y R+WEPYLT A IY ILT SLSKL +Y+ERK Sbjct: 181 GEYYRVWEPYLTVAFIYLILTLSLSKLSHYLERK 214 >B4BPF1.1 B4BPF1_9BACI Polar amino acid ABC transporter, inner membrane subunit Length = 218 Score = 240 bits (613), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 129/214 (60%), Positives = 145/214 (67%) Query: 1 MDIRFDIIAHYLPVLLRGTAFTXXXXXXXXXXXXXXXXXXXFGKMAPKAYFRWPFHCYIN 60 MD RFDII Y P +G T GKM+ R PF YIN Sbjct: 1 MDFRFDIIVEYAPYFWKGLLVTIGVSLAGIVFGLILGLFIGLGKMSRHPLIRLPFTWYIN 60 Query: 61 FFRGTPLYVQILIVHFGVIPAFYGSTNVLMTSFVALSLNSAAYSAEIFRAGIQSIDPGQR 120 FFRGTPL VQIL+VHFG +P N L++ V+LSLNSAAY AEIFRAGIQSID GQ Sbjct: 61 FFRGTPLVVQILLVHFGAMPLLLAEPNALVSLVVSLSLNSAAYVAEIFRAGIQSIDKGQM 120 Query: 121 EAAVSLGMTRAQAMRFIILPQAVKRMVPAFGNEFIVLVKDSSLLALIAAPEIMYWSNTMK 180 EAA SLGMT AQAMR+IILPQA+KRM+P F NEFIVL+KDSSL +IAAPEIMYW Sbjct: 121 EAARSLGMTHAQAMRYIILPQALKRMIPPFANEFIVLIKDSSLGMIIAAPEIMYWGKAAA 180 Query: 181 GQYLRIWEPYLTAALIYFILTYSLSKLLNYIERK 214 G+Y R+WEPYLT A IY ILT SLSKL +Y+ERK Sbjct: 181 GEYYRVWEPYLTVAFIYLILTLSLSKLSHYLERK 214 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.142 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,060,929,945 Number of extensions: 37023960 Number of successful extensions: 130225 Number of sequences better than 1.0e-05: 7659 Number of HSP's gapped: 123630 Number of HSP's successfully gapped: 7668 Length of query: 215 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 85 Effective length of database: 1,835,964,253 Effective search space: 156056961505 Effective search space used: 156056961505 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 128 (53.9 bits)