BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0459.0025.p (193 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A8F9P3.1 A8F9P3_BACP2 TerD family tellurium resistance protein 306 7e-82 B4AML3.1 B4AML3_BACPU Tellurium resistance protein TerD 302 8e-81 O34384.1 YCEE_BACSU Uncharacterized protein yceE 300 5e-80 A7Z140.1 A7Z140_BACA2 YceE 300 5e-80 Q65NQ0.1 Q65NQ0_BACLD YceE 299 7e-80 >A8F9P3.1 A8F9P3_BACP2 TerD family tellurium resistance protein Length = 192 Score = 306 bits (783), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 145/191 (75%), Positives = 165/191 (86%) Query: 1 VTISLSKGQRIDLTKTNPGLTKVVVGLGWDTNKYSGGKDFDLDASAFLLHEDGKAKGEDD 60 + I LSKGQR+DLTKTNPGLTKV++GLGWDTNKYSGG +FDLDASAFL+ + + + + D Sbjct: 1 MAIQLSKGQRVDLTKTNPGLTKVMIGLGWDTNKYSGGAEFDLDASAFLVDANNRCQQDTD 60 Query: 61 FVFYNNPSGGSGSVTHTGDNRTGEGDGDDEQILVDFSKVPANIQRIGITVTIYDYEARVQ 120 FVFYNN SGSVTHTGDNRTGEGDGDDEQILVDFSK+PANI RIGITVTI+D EAR Q Sbjct: 61 FVFYNNLQHPSGSVTHTGDNRTGEGDGDDEQILVDFSKIPANIDRIGITVTIHDAEARSQ 120 Query: 121 NFGQVSNAFVRVVDASSDREILRFDLGEDFSTETAVVFCEFYRHGADWKFQAVGSGFAGG 180 NFGQVSNAFVRVV E++RFDLGEDFS ETAVV CE YRHG+DWKF A+GSGF+GG Sbjct: 121 NFGQVSNAFVRVVSEEGGEELIRFDLGEDFSIETAVVVCELYRHGSDWKFNAIGSGFSGG 180 Query: 181 LSALCRNYGLD 191 L+ALC+NYGL+ Sbjct: 181 LAALCQNYGLE 191 >B4AML3.1 B4AML3_BACPU Tellurium resistance protein TerD Length = 192 Score = 302 bits (774), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 143/192 (74%), Positives = 164/192 (85%) Query: 1 VTISLSKGQRIDLTKTNPGLTKVVVGLGWDTNKYSGGKDFDLDASAFLLHEDGKAKGEDD 60 + I LSKGQR+DLTKTNPGLTKV++GLGWDTNKYSGG +FDLDASAFL+ + + + + D Sbjct: 1 MAIQLSKGQRVDLTKTNPGLTKVMIGLGWDTNKYSGGAEFDLDASAFLVDANNRCQQDTD 60 Query: 61 FVFYNNPSGGSGSVTHTGDNRTGEGDGDDEQILVDFSKVPANIQRIGITVTIYDYEARVQ 120 FVFYNN SGSVTHTGDNRTGEGDGDDEQILVDFSK+PANI RIGITVTI+D E R Q Sbjct: 61 FVFYNNLQHPSGSVTHTGDNRTGEGDGDDEQILVDFSKIPANIDRIGITVTIHDAETRSQ 120 Query: 121 NFGQVSNAFVRVVDASSDREILRFDLGEDFSTETAVVFCEFYRHGADWKFQAVGSGFAGG 180 NFGQVSNAFVRVV+ E++RFDLGEDFS ETAVV CE YRH +DWKF A+GSGF+GG Sbjct: 121 NFGQVSNAFVRVVNEEGGEELIRFDLGEDFSIETAVVVCELYRHESDWKFNAIGSGFSGG 180 Query: 181 LSALCRNYGLDA 192 L+ALC+NYGL+ Sbjct: 181 LAALCQNYGLEV 192 >O34384.1 YCEE_BACSU Uncharacterized protein yceE Length = 192 Score = 300 bits (768), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 144/190 (75%), Positives = 160/190 (84%) Query: 1 VTISLSKGQRIDLTKTNPGLTKVVVGLGWDTNKYSGGKDFDLDASAFLLHEDGKAKGEDD 60 + I LSKGQRIDLTKTNPGLTK V+GLGWDTNKYSGG DFDLDASAFL+ + D Sbjct: 1 MAIQLSKGQRIDLTKTNPGLTKAVIGLGWDTNKYSGGHDFDLDASAFLVDAHDNCVNDLD 60 Query: 61 FVFYNNPSGGSGSVTHTGDNRTGEGDGDDEQILVDFSKVPANIQRIGITVTIYDYEARVQ 120 FVFYNN SG V HTGDNRTGEGDGDDEQI+VDFSK+PA+I++IGITVTI+D EAR Q Sbjct: 61 FVFYNNLEHPSGGVIHTGDNRTGEGDGDDEQIIVDFSKIPAHIEKIGITVTIHDAEARSQ 120 Query: 121 NFGQVSNAFVRVVDASSDREILRFDLGEDFSTETAVVFCEFYRHGADWKFQAVGSGFAGG 180 NFGQVSNAFVRVVD + E+LRFDLGEDFS ETAVV CE YRHG +WKF A+GSGF+GG Sbjct: 121 NFGQVSNAFVRVVDEETQNELLRFDLGEDFSIETAVVVCELYRHGGEWKFNAIGSGFSGG 180 Query: 181 LSALCRNYGL 190 L+ALCRNYGL Sbjct: 181 LAALCRNYGL 190 >A7Z140.1 A7Z140_BACA2 YceE Length = 192 Score = 300 bits (767), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 143/190 (75%), Positives = 162/190 (85%) Query: 1 VTISLSKGQRIDLTKTNPGLTKVVVGLGWDTNKYSGGKDFDLDASAFLLHEDGKAKGEDD 60 + I L+KGQR+DLTKTNPGLTK V+GLGWDTNKYSGG DFDLDASAFL+ + D Sbjct: 1 MAIQLAKGQRVDLTKTNPGLTKAVIGLGWDTNKYSGGHDFDLDASAFLVDAHDNCVNDLD 60 Query: 61 FVFYNNPSGGSGSVTHTGDNRTGEGDGDDEQILVDFSKVPANIQRIGITVTIYDYEARVQ 120 FVFYNN SG V HTGDNRTGEG+GDDEQI+VDFSK+PANI++IGITVTI+D EAR Q Sbjct: 61 FVFYNNLEHPSGGVIHTGDNRTGEGEGDDEQIIVDFSKIPANIEKIGITVTIHDAEARGQ 120 Query: 121 NFGQVSNAFVRVVDASSDREILRFDLGEDFSTETAVVFCEFYRHGADWKFQAVGSGFAGG 180 NFGQVSNAFVRVVD +S E+LRFDLGEDFS ETAVV CE YRHGA+WKF A+GSGF+GG Sbjct: 121 NFGQVSNAFVRVVDENSQNELLRFDLGEDFSIETAVVVCELYRHGAEWKFNAIGSGFSGG 180 Query: 181 LSALCRNYGL 190 L++LCRNYGL Sbjct: 181 LASLCRNYGL 190 >Q65NQ0.1 Q65NQ0_BACLD YceE Length = 192 Score = 299 bits (766), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 138/190 (72%), Positives = 166/190 (87%) Query: 1 VTISLSKGQRIDLTKTNPGLTKVVVGLGWDTNKYSGGKDFDLDASAFLLHEDGKAKGEDD 60 + I LSKGQRIDLTKTNPGLTK ++GLGWDTNKY+GG DFDLDASAFL+ ++ + + D Sbjct: 1 MAIQLSKGQRIDLTKTNPGLTKALIGLGWDTNKYTGGADFDLDASAFLVDQNDRCINDHD 60 Query: 61 FVFYNNPSGGSGSVTHTGDNRTGEGDGDDEQILVDFSKVPANIQRIGITVTIYDYEARVQ 120 FVFYNN SG+V HTGDNRTGEG+GDDEQI+VDFSK+PA++++IGITVTI++ E+R Q Sbjct: 61 FVFYNNLEHPSGAVIHTGDNRTGEGEGDDEQIIVDFSKIPAHVEKIGITVTIHEAESRSQ 120 Query: 121 NFGQVSNAFVRVVDASSDREILRFDLGEDFSTETAVVFCEFYRHGADWKFQAVGSGFAGG 180 NFGQVSNAFVR+VD S++ E+LRFDLGEDFS ETAVV CE YRHG DWKF A+GSGF+GG Sbjct: 121 NFGQVSNAFVRLVDESTNEELLRFDLGEDFSIETAVVVCELYRHGGDWKFNAIGSGFSGG 180 Query: 181 LSALCRNYGL 190 L++LCRNYGL Sbjct: 181 LASLCRNYGL 190 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.137 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,270,383,993 Number of extensions: 57191370 Number of successful extensions: 130599 Number of sequences better than 1.0e-05: 899 Number of HSP's gapped: 129525 Number of HSP's successfully gapped: 912 Length of query: 193 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 65 Effective length of database: 1,854,806,283 Effective search space: 120562408395 Effective search space used: 120562408395 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)