BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0454.0018.p (169 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q03HQ9.1 Q03HQ9_PEDPA Na+/xyloside symporter related transporter 111 3e-23 B8DUW5.1 B8DUW5_BIFA0 Na+/xyloside symporter related transporter 106 8e-22 B2EBS8.1 B2EBS8_BIFAN Na+/xyloside symporter related transporter 106 8e-22 C1P8W4.1 C1P8W4_BACCO Sugar (Glycoside-Pentoside-Hexuronide) tra... 101 2e-20 Q03HN3.1 Q03HN3_PEDPA Na+/xyloside symporter related transporter 101 3e-20 >Q03HQ9.1 Q03HQ9_PEDPA Na+/xyloside symporter related transporter Length = 448 Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 86/167 (51%) Query: 1 VGIICVPFLTKKYSKKTLMIAGMAVSLLGQLIIYLGGDSTAMXXXXXXXXXXXXXXXXXX 60 + I +PF+ K +K M+ G+A+ GQ ++ G + A+ Sbjct: 280 IATISIPFVVKVTNKTMTMLIGLAIGAFGQAMMAFAGSNFALVIVAWVIGIFGAALACAM 339 Query: 61 XFALIADTVDYGEWKSGVRAQGLLASTASGIAIKLGSGLGGAIPAWLLAAGGYVANQTQT 120 FA++ADTVD+GEWK+G+RA G L + S I+LGSG G IP+ ++AA G+VANQ QT Sbjct: 340 PFAMLADTVDFGEWKTGIRASGFLTAVGSAFCIQLGSGFGSFIPSKIMAAAGFVANQKQT 399 Query: 121 PTALRMIEISFIWXXXXXXXXXXXXXXXXYRWDKPHHEIVAELEARR 167 +L I+ FIW ++++K +I EL+ R Sbjct: 400 AESLASIKFCFIWLPIIVYIISGIIMLFYFKYEKMEPQIKKELQNRH 446 >B8DUW5.1 B8DUW5_BIFA0 Na+/xyloside symporter related transporter Length = 481 Score = 106 bits (264), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 83/170 (48%), Gaps = 1/170 (0%) Query: 1 VGIICVPFLTKKYSKKTL-MIAGMAVSLLGQLIIYLGGDSTAMXXXXXXXXXXXXXXXXX 59 VG I +P L K KTL MI G+A+ +GQL++ L G + + Sbjct: 305 VGTIAMPILANKLKNKTLTMIIGLAIGAIGQLLMPLAGSNVPLALTFWTIGVIGAAIACG 364 Query: 60 XXFALIADTVDYGEWKSGVRAQGLLASTASGIAIKLGSGLGGAIPAWLLAAGGYVANQTQ 119 F ++ADTVDYGEWK+G+ A G L + S I++GSG G +P ++ A GYVAN Q Sbjct: 365 MPFGMLADTVDYGEWKTGIHAAGFLTAVGSAFCIQVGSGFGAFLPLQIMNANGYVANAQQ 424 Query: 120 TPTALRMIEISFIWXXXXXXXXXXXXXXXXYRWDKPHHEIVAELEARRAQ 169 + AL I FIW +++K I E+ RRA+ Sbjct: 425 SQQALNAISFCFIWLPVIVYAIVAAIMCFYRKYEKMEPMIKEEIAVRRAR 474 >B2EBS8.1 B2EBS8_BIFAN Na+/xyloside symporter related transporter Length = 481 Score = 106 bits (264), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 83/170 (48%), Gaps = 1/170 (0%) Query: 1 VGIICVPFLTKKYSKKTL-MIAGMAVSLLGQLIIYLGGDSTAMXXXXXXXXXXXXXXXXX 59 VG I +P L K KTL MI G+A+ +GQL++ L G + + Sbjct: 305 VGTIAMPILANKLKNKTLTMIIGLAIGAIGQLLMPLAGSNVPLALTFWTIGVIGAAIACG 364 Query: 60 XXFALIADTVDYGEWKSGVRAQGLLASTASGIAIKLGSGLGGAIPAWLLAAGGYVANQTQ 119 F ++ADTVDYGEWK+G+ A G L + S I++GSG G +P ++ A GYVAN Q Sbjct: 365 MPFGMLADTVDYGEWKTGIHAAGFLTAVGSAFCIQVGSGFGAFLPLQIMNANGYVANAQQ 424 Query: 120 TPTALRMIEISFIWXXXXXXXXXXXXXXXXYRWDKPHHEIVAELEARRAQ 169 + AL I FIW +++K I E+ RRA+ Sbjct: 425 SQQALNAISFCFIWLPVIVYAIVAAIMCFYRKYEKMEPMIKEEIAVRRAR 474 >C1P8W4.1 C1P8W4_BACCO Sugar (Glycoside-Pentoside-Hexuronide) transporter Length = 467 Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 86/169 (50%) Query: 1 VGIICVPFLTKKYSKKTLMIAGMAVSLLGQLIIYLGGDSTAMXXXXXXXXXXXXXXXXXX 60 VG+ +PF+ KK++K + G+A +++GQL++ + G Sbjct: 296 VGMASIPFIVKKFNKWGTTVFGLAAAIIGQLMMVVSGSHLIPLLISWCIACIGSGIACSM 355 Query: 61 XFALIADTVDYGEWKSGVRAQGLLASTASGIAIKLGSGLGGAIPAWLLAAGGYVANQTQT 120 FA++ DTVDYGEWK+GVRA G L + S IK+G+GLG IP+ ++ YV N Q+ Sbjct: 356 FFAMVGDTVDYGEWKNGVRASGFLTAIGSSFCIKMGAGLGSFIPSVIMKTFHYVPNHVQS 415 Query: 121 PTALRMIEISFIWXXXXXXXXXXXXXXXXYRWDKPHHEIVAELEARRAQ 169 +AL I+ SFIW ++++ ++ +L + +Q Sbjct: 416 ASALSAIKFSFIWMPIVIFALNIIPLYMYKKYEEHEPIVIRDLMNKNSQ 464 >Q03HN3.1 Q03HN3_PEDPA Na+/xyloside symporter related transporter Length = 461 Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 55/135 (40%), Positives = 84/135 (62%), Gaps = 3/135 (2%) Query: 1 VGIICVPFLTKKYSKKTLMIAGMAVSLLGQLIIYLGGD--STAMXXXXXXXXXXXXXXXX 58 + ++ P + KK K+ M+ GM ++++GQLI+ +G + A+ Sbjct: 288 LAVVITPAVAKKIGKRNTMLMGMFLAIVGQLILSIGASQLNVAIIIVATLVGYLGTGFVS 347 Query: 59 XXXFALIADTVDYGEWKSGVRAQGLLASTASGIAIKLGSGLGGAIPAWLLAAGGYVANQT 118 ++AD+VDYGEWK+GVRA+G++ S +S + KLG G+GGA+ +L+AGGYVAN T Sbjct: 348 GLIAVMLADSVDYGEWKNGVRAEGIVTSFSS-FSAKLGMGIGGAVTGMILSAGGYVANAT 406 Query: 119 QTPTALRMIEISFIW 133 QT TALR IE ++IW Sbjct: 407 QTATALRAIEQNYIW 421 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 753,820,759 Number of extensions: 22724371 Number of successful extensions: 79146 Number of sequences better than 1.0e-05: 418 Number of HSP's gapped: 79105 Number of HSP's successfully gapped: 418 Length of query: 169 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 44 Effective length of database: 1,883,069,328 Effective search space: 82855050432 Effective search space used: 82855050432 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)