BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0454.0017.p (280 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q03HN3.1 Q03HN3_PEDPA Na+/xyloside symporter related transporter 199 2e-49 A0AF78.1 A0AF78_LISW6 XylP protein 196 2e-48 B1MYM7.1 B1MYM7_LEUCK Na+:melibiose symporter and related transp... 189 3e-46 Q8ZRZ1.1 Q8ZRZ1_SALTY Putative sodium galactoside symporter 182 2e-44 B5MV05.1 B5MV05_SALET Xylose-proton symporter 182 2e-44 >Q03HN3.1 Q03HN3_PEDPA Na+/xyloside symporter related transporter Length = 461 Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 96/263 (36%), Positives = 147/263 (55%) Query: 6 ESNQKLSLLEKVSYGLGDTASNLIYAVVTTYLTFYFTDVYXXXXXXXXXXXXXXXXXDMV 65 ++ +S E++SY + D A NL + ++ TYL F++TDV+ D + Sbjct: 10 HTHNLVSWKERISYAVSDFACNLSFQMIGTYLMFFYTDVFGITAAAVGTLFLVARIVDAI 69 Query: 66 DSPIFGILIDKTHTKWGKSRPWILWSCFPFTIVTILLFMGPELSASGKLVYAYIFYIASN 125 D P++G+LID THT+WGKSRP+ LW PF I +L F P LS GK+V+AYI YI + Sbjct: 70 DGPVWGLLIDHTHTRWGKSRPFFLWFAIPFAIFCVLCFTTPNLSMGGKVVWAYITYIGVD 129 Query: 126 ILYTAVNNXXXXXXXXXXXEIQERTVANSFRMFXXXXXXXXXXXXXXXXVAFFGNGDQQK 185 +LY+AVN + ER ++ R F V FFG G+QQK Sbjct: 130 VLYSAVNIPITSILPSLTNDTDERVTLSTIRQFFGTAGATIVTVAALPMVNFFGGGNQQK 189 Query: 186 GFFHTMILFGAVGLVMFLITFFNTRERVQDRSGGKSLPVRESVKAIKGNMPWVAGVLIGV 245 GFF ++++ + ++ LITF NTRER+Q +S KS+PV++S+KA+K N PW + I Sbjct: 190 GFFISVLILAIISAILLLITFANTRERIQTKSSRKSIPVKQSLKALKKNWPWAIIIFINF 249 Query: 246 VFFILYVVKLSSGIYYITYNLNQ 268 ++++ K +Y+ YN++ Sbjct: 250 IYWLGMQTKSQVTVYFFKYNMHN 272 >A0AF78.1 A0AF78_LISW6 XylP protein Length = 462 Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 101/254 (39%), Positives = 144/254 (56%), Gaps = 2/254 (0%) Query: 15 EKVSYGLGDTASNLIYAVVTTYLTFYFTDVYXXXXXXXXXXXXXXXXXDMVDSPIFGILI 74 E++SYGL DTA NL + V+ TYL F++TDVY D D PI GI I Sbjct: 21 ERISYGLSDTACNLAFQVIGTYLMFFYTDVYGISAAAVGTLFLVARVIDAFDGPIIGIFI 80 Query: 75 DKTHTKWGKSRPWILWSCFPFTIVTILLFMGPELSASGKLVYAYIFYIASNILYTAVNNX 134 D+THTKWGKSRP+ LW PF ++ +L F P+L+ GK+V+AY+ YI I Y+ VN Sbjct: 81 DRTHTKWGKSRPFFLWFSIPFGLMCVLTFTTPDLTDGGKIVWAYVTYILVGIFYSCVNLP 140 Query: 135 XXXXXXXXXXEIQERTVANSFRMFXXXXXXXXXXXXXXXXVAFFGNGDQQKGFFHTMILF 194 +ERTV + R F VA G+GDQQKGFF T++LF Sbjct: 141 ITSILPSLTNNPKERTVLGTIRQFGGTIGQIIVTVFTLPIVALLGSGDQQKGFFLTILLF 200 Query: 195 GAVGLVMFLITFFNTRERVQDRSGGKSLPVRESVKAIKGNMPWVAGVLIGVVFFILYVVK 254 V +V+ L TF NT+ER+ + K + V++SVKA+K N PW+ +L+ ++++ +K Sbjct: 201 SIVAVVLLLNTFVNTKERITNVQ--KVVRVKDSVKAMKRNWPWMIMILMNFIYWMAMTMK 258 Query: 255 LSSGIYYITYNLNQ 268 + +Y+ YNL + Sbjct: 259 NQTTVYFFKYNLGR 272 >B1MYM7.1 B1MYM7_LEUCK Na+:melibiose symporter and related transporter Length = 463 Score = 189 bits (479), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 97/265 (36%), Positives = 147/265 (55%) Query: 5 EESNQKLSLLEKVSYGLGDTASNLIYAVVTTYLTFYFTDVYXXXXXXXXXXXXXXXXXDM 64 E+++ KL E++SYG+ D A + + +V TYL +++TDV+ D Sbjct: 8 EQNSGKLPWNERLSYGISDFACSFSFNLVGTYLMYFYTDVFGITASAVGTLMLVARVIDA 67 Query: 65 VDSPIFGILIDKTHTKWGKSRPWILWSCFPFTIVTILLFMGPELSASGKLVYAYIFYIAS 124 +D PI+GILID THT+WGKSRP+ LW PFT +IL F P+L + K+V+AY+ YI Sbjct: 68 IDGPIWGILIDHTHTRWGKSRPYFLWFNAPFTFFSILCFTTPDLPMTWKIVWAYVTYIGV 127 Query: 125 NILYTAVNNXXXXXXXXXXXEIQERTVANSFRMFXXXXXXXXXXXXXXXXVAFFGNGDQQ 184 ++LY+A+N + +ER + ++ R V G DQ Sbjct: 128 DVLYSAINIPLTSILPSMTTDPKERVLLSTIRSLFSNFGGTLISVIALPLVTLIGGKDQS 187 Query: 185 KGFFHTMILFGAVGLVMFLITFFNTRERVQDRSGGKSLPVRESVKAIKGNMPWVAGVLIG 244 +GFF +L +V V++L+ FFN RE VQ RS ++LP++ES+KA+K N PW+ VL Sbjct: 188 RGFFWVAVLGASVFFVLYLVAFFNLREHVQTRSSQQALPIKESLKALKRNWPWLIVVLEI 247 Query: 245 VVFFILYVVKLSSGIYYITYNLNQP 269 +++I K +Y+ YNLN P Sbjct: 248 FIYWIGMSAKGQVTMYFFKYNLNAP 272 >Q8ZRZ1.1 Q8ZRZ1_SALTY Putative sodium galactoside symporter Length = 457 Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 94/266 (35%), Positives = 144/266 (54%), Gaps = 1/266 (0%) Query: 4 REESNQKLSLLEKVSYGLGDTASNLIYAVVTTYLTFYFTDVYXXXXXXXXXXXXXXXXXD 63 + + LSLL+++SYG D A NL+Y +TY+ +++TDV D Sbjct: 9 QPSGSASLSLLQRISYGSLDVAGNLLYCFSSTYILYFYTDVAGISLAVAGVILLLARIID 68 Query: 64 MVDSPIFGILIDKTHTKWGKSRPWILWSCFPFTIVTILLFMGPELSASGKLVYAYIFYIA 123 +D+PI+GI+IDKT +++GK RPW LW PF + + L F P++S +GK +YA I Y+ Sbjct: 69 GIDAPIWGIIIDKTRSRYGKCRPWFLWLPLPFAVFSALSFWSPDISMTGKAIYAAISYMI 128 Query: 124 SNILYTAVNNXXXXXXXXXXXEIQERTVANSFRMFXXXXXXXXXXXXXXXXVAFFGNGDQ 183 ++IL+T +N +ER V NS+RM VAF GNGD Sbjct: 129 ASILFTGLNTPLSAILPLMTLSPKERLVLNSWRMTGGQIGVLLMNATALPLVAFLGNGDD 188 Query: 184 QKGFFHTMILFGAVGLVMFLITFFNTRERVQDR-SGGKSLPVRESVKAIKGNMPWVAGVL 242 GF +T I F + + L F N RE D+ LP+++S A+KGN PW+ VL Sbjct: 189 HAGFIYTAITFAIISCALTLFAFKNIREMDTDKIQHEPKLPMKKSFAAMKGNWPWILMVL 248 Query: 243 IGVVFFILYVVKLSSGIYYITYNLNQ 268 ++F+I + ++ +YY+TYNL++ Sbjct: 249 ANLIFWIALQQRNTTIVYYLTYNLDR 274 >B5MV05.1 B5MV05_SALET Xylose-proton symporter Length = 457 Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 94/266 (35%), Positives = 144/266 (54%), Gaps = 1/266 (0%) Query: 4 REESNQKLSLLEKVSYGLGDTASNLIYAVVTTYLTFYFTDVYXXXXXXXXXXXXXXXXXD 63 + + LSLL+++SYG D A NL+Y +TY+ +++TDV D Sbjct: 9 QPSGSASLSLLQRISYGSLDVAGNLLYCFSSTYILYFYTDVAGISLAVAGVILLLARIID 68 Query: 64 MVDSPIFGILIDKTHTKWGKSRPWILWSCFPFTIVTILLFMGPELSASGKLVYAYIFYIA 123 +D+PI+GI+IDKT +++GK RPW LW PF + + L F P++S +GK +YA I Y+ Sbjct: 69 GIDAPIWGIIIDKTRSRYGKCRPWFLWLPLPFAVFSALSFWSPDISMTGKAIYAAISYMI 128 Query: 124 SNILYTAVNNXXXXXXXXXXXEIQERTVANSFRMFXXXXXXXXXXXXXXXXVAFFGNGDQ 183 ++IL+T +N +ER V NS+RM VAF GNGD Sbjct: 129 ASILFTGLNTPLSAILPLMTLSPKERLVLNSWRMTGGQIGVLLMNATALPLVAFLGNGDD 188 Query: 184 QKGFFHTMILFGAVGLVMFLITFFNTRERVQDR-SGGKSLPVRESVKAIKGNMPWVAGVL 242 GF +T I F + + L F N RE D+ LP+++S A+KGN PW+ VL Sbjct: 189 HAGFIYTAITFAIISCALTLFAFKNIREMDTDKIQHEPKLPMKKSFAAMKGNWPWILMVL 248 Query: 243 IGVVFFILYVVKLSSGIYYITYNLNQ 268 ++F+I + ++ +YY+TYNL++ Sbjct: 249 ANLIFWIALQQRNTTIVYYLTYNLDR 274 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.141 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,275,519,578 Number of extensions: 44090988 Number of successful extensions: 167349 Number of sequences better than 1.0e-05: 920 Number of HSP's gapped: 165408 Number of HSP's successfully gapped: 920 Length of query: 280 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 146 Effective length of database: 1,798,280,193 Effective search space: 262548908178 Effective search space used: 262548908178 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)