BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0454.0012.p (757 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A8MEF5.1 A8MEF5_ALKOO Transcriptional regulator, AraC family 353 3e-95 B1D623.1 B1D623_9BACL Transcriptional regulator, AraC family EC=... 343 6e-92 Q9LBF2.1 Q9LBF2_AERPU Beta-1,4-xylosidase with transcriptional r... 333 4e-89 C3B022.1 C3B022_BACMY Xylan 1,4-beta-xylosidase 273 3e-71 B2TL43.1 B2TL43_CLOBB Transcriptional regulator, AraC family EC=... 228 2e-57 >A8MEF5.1 A8MEF5_ALKOO Transcriptional regulator, AraC family Length = 854 Score = 353 bits (907), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 232/778 (29%), Positives = 399/778 (51%), Gaps = 46/778 (5%) Query: 15 PVHVKINETNSEELHRHSGLEIIWLFTGKLKVTIGQNDYXXXXXXXXXXXXFESHRVIPQ 74 P+ I ++H HS +EI+ + G + + +G + Y E + + Sbjct: 15 PIRGSIYSIEGFKVHWHSAVEILLVLQGNVSLGVGDHKYLLKENDLILINYNEIYSITRG 74 Query: 75 ALNTRFIQLHVDSLYIYKHNHDFYNLNYDLKSFKNSEDNQHPYDVVRILFSQLVGKGEEN 134 + + L +D + + +++ +F L +D KSF +DNQ +DVVR +++V + + Sbjct: 75 KEDNLLLSLQIDPVTLSQYDPNFSRLVFDCKSFMYCKDNQEKFDVVRYYMAKVVWEYSKK 134 Query: 135 KEVLRL-----LGYITSRFSKKLSSPEPDNRAS---NKEFNIVQQILNRVELDFKGKVTL 186 K +L + + + L++ + S +K+ +++IL+ + + K++L Sbjct: 135 KPGYQLRIASNIHLLAAHLVNNLTNENLNQLKSEIKDKDLARLKRILSYINENIDKKISL 194 Query: 187 NQIAQEQHYNSSYLSDIFRKNVGVTFKAYLEEVRIRYSLFLLQNQETSITNIALSSGFSD 246 IA+ +H + YLS + N+GVTF+ Y+ +R+ ++ LL + +IT ++ SGF++ Sbjct: 195 KTIAKNEHISYFYLSRFIKDNLGVTFQEYINTLRLDKAVNLLLSSNKTITEVSYESGFAN 254 Query: 247 EKSYYKAIKDKFSLTPLQLRKKHLEEN---------HDG----LALTGSSK---EQLIHH 290 K + K K+ F +PLQ +K H E + H G + L K ++L+ + Sbjct: 255 IKLFNKLFKETFGASPLQYKKIHKESSEQKGYSDSLHHGQVSRVCLGVERKTAFKKLLSY 314 Query: 291 YASLPLELKAIEE-NTIQSTIVKDIQADGYELKQVWNKIMNIGSANTLLNQNIRDQIKEM 349 + L+ + ++ T + I D+ L W K+ SA+ L ++Q+KE+ Sbjct: 315 LKPMDLQPQLSDKYKTNRINISVDVSTIEEPLNHYWKKLTTFSSASEGLRSQWQNQLKEL 374 Query: 350 REEIPIEYLRFEGVFNQELDVIQ-KDRDGLKFNWKFINNILDYTRELELKPFICLSYMPL 408 + E EY+R VF+ + V + D + +NW ++ + D + + +KPFI L ++P Sbjct: 375 QREGGFEYIRVHDVFSDRMMVCNFTEADTMVYNWSSVDELFDLFKSVNIKPFIGLGFVPS 434 Query: 409 LFASKSTSFFNYQGNTSPPKEMSQWLSLVQSFMMNCINRYGLDTVSEWYFQIWTE--LPA 466 F +Q N SP + M W L + F+ +CINRYGL V WYF++W E LP Sbjct: 435 KLNKMDQPIFLWQDNRSPSQPMELWTELTREFIKHCINRYGLREVETWYFEVWKEPELP- 493 Query: 467 YGIHWSGTLEQYFELYKQTALLIKGISPSLKVGPAAENFHTDEQ--LSERLLGFCRENAV 524 YG W G E+ FE Y+QTAL IK I+P+LKVG +H ++Q E L +C++ ++ Sbjct: 494 YGF-WDGRNEEDFEFYRQTALTIKSIAPTLKVGGPGATYHMNQQSYWLEIFLTYCKDYSI 552 Query: 525 PLDFYSCNIYHNRV--------KFKDWLERSQTSPVDIKLIPFQ--YEAKNHTRHLLEKM 574 PLDF S +IY L+ S++ K + + Y KN+T + ++ Sbjct: 553 PLDFVSLHIYPEDYIANEKECENISKMLQESKSKDAMKKWMDLKKIYLDKNYTFNAVDSA 612 Query: 575 HRLLETHYKEDIEFIVTRWNFSWDVTNFLHDTAFMATFIIDHMLDHSAAHAKAIGFLSAS 634 + + +IE +T W+ S NF+ DT+F++TFI+ + LD AIG+ + + Sbjct: 613 KKTILDVLNFNIETHITEWSVSTSYGNFIQDTSFLSTFIVKNTLD-CVNKVDAIGYGAFT 671 Query: 635 DILYEWDIKSNPFFGGTGLVNTEGIKKSAYYAFVFLSKLGSTVFAKGKNYIMTKRGENIQ 694 D+ E + F GG GL+N EG+KK +Y+A+ L KLG + KG+ YI+TK+ ENIQ Sbjct: 672 DLREEAKGGISSFHGGLGLMNKEGLKKPSYFAYHLLDKLGDGIIEKGEEYIITKKDENIQ 731 Query: 695 ILAYNHTYPDQLFMKGGQP---DQHSYDIFEESNDLLLNIHLQNIYGTYKCKQYSLNR 749 ILAYN+ Y D++F+KG + Y +FEE + +N +L + G YK +Y L+R Sbjct: 732 ILAYNYAYFDEIFLKGDPSLLTSKERYLVFEEKSPNEINFNLSGLNGKYKITRYQLDR 789 >B1D623.1 B1D623_9BACL Transcriptional regulator, AraC family EC=3.2.1.37 Length = 833 Score = 343 bits (879), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 225/772 (29%), Positives = 383/772 (49%), Gaps = 55/772 (7%) Query: 15 PVHVKINETNSEELHRHSGLEIIWLFTGKLKVTIGQNDYXXXXXXXXXXXXFESHRVIPQ 74 PV + +N H H +E+I++ G + V + Q Y H++ Sbjct: 15 PVRLFVNSVKDIRFHWHKEIELIYVLQGAVTVYVDQRQYRLAEDDIIAINSMSVHKLECT 74 Query: 75 ALNTRFIQLHVDSLYIYKHNHDFYNLNYDLKSFKNSEDNQHPYDVVRILFSQLV------ 128 L+ + L + D +D S +E N++ YD +R +++V Sbjct: 75 NLDNVLLTLQFGPELL-----DDEGTLFDCNSMSQTEYNRYRYDRLRRCLARMVWESNKK 129 Query: 129 GKGEEN---KEVLRLLGYITSRFSKKLSSPEPDNRASNKEFNIVQQILNRVELDFKGKVT 185 G G N + L+G++T F+ ++ P + + ++ + +I+ V+ + K+T Sbjct: 130 GPGHRNYSMGSLQTLIGHLTRYFTAG-TNGGPREKGKDYDYMRLNRIIQYVDKHYNEKIT 188 Query: 186 LNQIAQEQHYNSSYLSDIFRKNVGVTFKAYLEEVRIRYSLFLLQNQETSITNIALSSGFS 245 L IA ++H + Y S F +G+ F+ YL +R+ + L + + S+T IAL GF+ Sbjct: 189 LQTIADQEHLSLHYFSHFFSDKIGIPFQKYLTLIRLEKAAAQLSDTDKSMTQIALDCGFA 248 Query: 246 DEKSYYKAIKDKFSLTPLQLR-----KKHLEENHDGLALTGSS-----KEQLIHHYASLP 295 + K + + K K+ TP R K ++ + L SS + I SL Sbjct: 249 NVKLFNQYFKGKYGSTPGSYRDALANAKTVDPDRKPLTTEESSSGDYYETDTISAMESLY 308 Query: 296 LELKAIE-----ENTIQSTI--VKDIQADGYELKQV----WNKIMNIGSANTLLNQNIRD 344 L E E+ + S + + D+QAD ++V WN++ G A L ++ R Sbjct: 309 RYLNDREGSPPVEHDLPSDMRDMVDVQADACVREEVFIKHWNRVTTAGRAVEGLREDWRR 368 Query: 345 QIKEMREEIPIEYLRFEGVFNQELDVIQKDRDGLK-FNWKFINNILDYTRELELKPFICL 403 Q M+ + P ++RF G+FN E+ V +D G +NW +++ + D+ + + F+ L Sbjct: 369 QFAGMQGDFPFTHIRFHGIFNDEMMVYSEDEAGKPVYNWAYVDKLYDFLLQSGIHIFVEL 428 Query: 404 SYMPLLFASKSTSFFNYQGNTSPPKEMSQWLSLVQSFMMNCINRYGLDTVSEWYFQIWTE 463 S+MP+L + + F ++G SPP E +W LV+ F+ +C+NRYGL V +WYF++W E Sbjct: 429 SFMPVLLRRSNETIFWWKGGISPPAEQEKWNGLVREFVRHCVNRYGLAEVKKWYFEVWNE 488 Query: 464 LPAYGIHWSGTLEQYFELYKQTALLIKGISPSLKVGPAAENFHT--DEQLSERLLGFCRE 521 + WSGT E+YF Y+ TA +K +S L VG A + + ++ +E+ + +CR+ Sbjct: 489 PDLTDVCWSGTKEEYFAFYEATANAVKSVSRELTVGGPALGYGSLWNDNWAEQFIAYCRD 548 Query: 522 NAVPLDFYSCNIYHNRVKFKDWLERSQTSPVDIKLIPFQYEAKNHTRHLLEKMHRLLETH 581 VPLDF+S ++Y K + + T ++P Y + +LL++ H Sbjct: 549 REVPLDFFSFHVYSEYPFRKKEIGKLTT------IMPPSYYLD--SINLLKEKIGYGNPH 600 Query: 582 YKEDIEFIVTRWNFSWDVTNFLHDTAFMATFIIDHMLDHSAAHAKAIGFLSASDILYEWD 641 E +T WNFS N LHDT FMA FII H L A ++ + S +D+ E Sbjct: 601 TP---ELHITEWNFSLYDRNLLHDTMFMAPFIIHHALATLGA-VDSLAYWSFTDVFEESQ 656 Query: 642 IKSNPFFGGTGLVNTEGIKKSAYYAFVFLSKLGSTVFAKGKNYIMTKRG-ENIQILAYNH 700 + + F+GG GL+N EG++K YY F+ LS+LGS + A+G YI+T+ G E++QIL Y++ Sbjct: 657 VPPSMFYGGFGLINREGLRKPGYYGFLLLSRLGSRIIAQGDGYIVTRNGNEDVQILLYHY 716 Query: 701 TYPDQLFMKG---GQPDQHSYDIFEESNDLLLNIHLQNIYGTYKCKQYSLNR 749 + D L+ G G + + Y +FEE I L+ + G+YK ++ L+R Sbjct: 717 VHVDSLYASGDRTGLTELNRYSVFEEKGHKRFRIALEGLSGSYKRTRHVLDR 768 >Q9LBF2.1 Q9LBF2_AERPU Beta-1,4-xylosidase with transcriptional regulator of AraC/XylS family Length = 745 Score = 333 bits (854), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 202/641 (31%), Positives = 337/641 (52%), Gaps = 44/641 (6%) Query: 140 LLGYITSRFSKKLSSPEPDNRASNKEFNIVQQILNRVELDFKGKVTLNQIAQEQHYNSSY 199 L G + FS +S D + + ++ + ++L ++L + K+TL +A +H + Y Sbjct: 54 LCGCLQRYFSSGTNSALEDG-SRDYDYKRLNRVLTYIDLHYNEKITLQDMAHSEHLSLHY 112 Query: 200 LSDIFRKNVGVTFKAYLEEVRIRYSLFLLQNQETSITNIALSSGFSDEKSYYKAIKDKFS 259 S F +G+ F+ YL +R+ + L + +I+ IAL GF++ K + K K+K+ Sbjct: 113 FSHFFTDKIGIPFQKYLTLIRLEKAQAQLAANDKNISEIALDCGFANVKLFNKYFKEKYG 172 Query: 260 LTPLQLRK----------------KHLEENHDGLALTGSSKEQLIHHYASLPLELKAIEE 303 TP R+ K EE+ G + + Y L +++ A+++ Sbjct: 173 CTPGSYREASRTPELHQLNVNRKPKTYEESSSGDYYEMETLNAIGSLYRYLDVKVDAVQD 232 Query: 304 N-TIQSTIVKD-----IQADGYE--LKQVWNKIMNIGSANTLLNQNIRDQIKEMREEIPI 355 ++ S + D I+AD ++ WN M G A L ++ R Q+ ++ ++P Sbjct: 233 TLSVPSAHLSDQTCIEIRADQTSSVYEKHWNMTMTAGRAIEGLREDWRKQLSALKGKVPF 292 Query: 356 EYLRFEGVFNQELDVI-QKDRDGLKFNWKFINNILDYTRELELKPFICLSYMPLLFASKS 414 + +RF G+FN E+ V + ++D +NW +++ + D+ + ++PF+ LS+MP A Sbjct: 293 QNIRFHGIFNDEMMVYSENEQDIPLYNWSYVDKLYDFLLDQGVRPFVELSFMPSQLARSK 352 Query: 415 TSFFNYQGNTSPPKEMSQWLSLVQSFMMNCINRYGLDTVSEWYFQIWTELPAYGIHWSGT 474 + F ++GN SPP + ++W +LV F+ +C+NRYG + V +WYF++W E G+ W+G+ Sbjct: 353 ETLFWWRGNISPPSDPAKWQALVGEFVRHCLNRYGAEEVRQWYFEVWNEPDLAGVCWAGS 412 Query: 475 LEQYFELYKQTALLIKGISPSLKVGPAAENFHT--DEQLSERLLGFCRENAVPLDFYSCN 532 E+YF Y+ T IK I P LKVG A + + ++ +E L +CR+ V LDFYS + Sbjct: 413 KEEYFTFYESTVHAIKSILPELKVGGPAMGYGSLWNDTWAEEFLSYCRKREVALDFYSFH 472 Query: 533 IYHNRVKFKDWLERSQTSPVDIKLIPFQYEAKNHTRHLLEKMHRLLETHYKEDIEFIVTR 592 IY K K +E + + + + P Y K + +KM+ H +E VT Sbjct: 473 IYSEYPKLK--VEDDRLTQI---MPPAFY--KESIALMRQKMNASSYGH----VELHVTE 521 Query: 593 WNFSWDVTNFLHDTAFMATFIIDHMLDHSAAHAKAIGFLSASDILYEWDIKSNPFFGGTG 652 WNFS N LHDT FMA F+I H ++ + KA+ F S +D+ E + ++PF+GG G Sbjct: 522 WNFSLYDRNLLHDTMFMAPFVIYHTMN-TLGDVKAMAFWSFTDVFEESIVPASPFYGGFG 580 Query: 653 LVNTEGIKKSAYYAFVFLSKLGSTVFAKGKNYIMT-KRGENIQILAYNHTYPDQLFMKGG 711 L+N +G+ K +YYAF + KLG + KG Y+ T KR ++Q L Y++ + DQLF G Sbjct: 581 LINRDGLNKPSYYAFELMQKLGDELMVKGDGYVGTRKRDGSMQFLFYHYVHVDQLFASGD 640 Query: 712 QPDQHS---YDIFEESNDLLLNIHLQNIYGTYKCKQYSLNR 749 + S YD+FEE + L N+ G YKC Y L+R Sbjct: 641 WSELSSSTRYDVFEEKGSKAYELTLSNLEGPYKCTSYQLDR 681 >C3B022.1 C3B022_BACMY Xylan 1,4-beta-xylosidase Length = 768 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 189/686 (27%), Positives = 325/686 (47%), Gaps = 60/686 (8%) Query: 106 SFKNSEDNQHPYDVVRILFSQLV------GKGEENKEVLRLLGYITSRFSKKLSSPEPDN 159 + ++ +H D+VR L +++V G E +R+L + S K+ Sbjct: 36 CYSGDKERRHALDLVRRLLAEMVQLMYQKGDAYEIDMQIRMLE-VLSILLKQFKVSASAG 94 Query: 160 RASNKEFNIVQQILNRVELDFKGKVTLNQIAQEQHYNSSYLSDIFRKNVGVTFKAYLEEV 219 + K + +I+ +E +K +TL IA+ + + YLS F N+G+ F++YL + Sbjct: 95 IMNEKYMERMLRIITYIEDHYKEPITLQAIAEREFLSIPYLSKFFSDNIGLNFQSYLTSI 154 Query: 220 RIRYSLF-LLQNQETSITNIALSSGFSDEKSYYKAIKDKFSLTPLQLRK--------KHL 270 R++Y++ LL N E I +IAL GF + KS+Y A K ++++TP + RK K Sbjct: 155 RLKYTVEELLHNGEIPIADIALKHGFPNAKSFYTAFKARYNVTPSEYRKHFRPDFGKKKE 214 Query: 271 EENHDGLALTGSSKEQLIHHY-----ASLPLELKAIEENTIQSTIVKDIQADGYELKQVW 325 E+ + L SS +I Y + E+ +E Q ++ A ++ W Sbjct: 215 RESSNYLTFNQSSALGIISQYLQRSPSQQVEEIIGLETKAYQVSL----SAHSSLIRHTW 270 Query: 326 NKIMNIGSANTLLNQNIRDQIKEMREEIPIEYLRFEGVFNQELDVIQKDRDGLK-FNWKF 384 ++ IG A L+ +++ Q+K ++E P YLRF G+F+ + V +D G +N++ Sbjct: 271 KSLIAIGKAKEGLHADVQWQLKRVQERCPFRYLRFHGIFDDSMMVYTEDETGKPVYNFRL 330 Query: 385 INNILDYTRELELKPFICLSYMP-LLFASKSTSFFNYQGNTSPPKEMSQWLSLVQSFMMN 443 ++ + D+ + +KPFI L +MP L A K + F + SPP+ + +W LV F+ + Sbjct: 331 VDELFDFLLSVRIKPFIELGFMPSALAADKEKTIFYVKSYISPPRSVDKWCELVDRFLRH 390 Query: 444 CINRYGLDTVSEWYFQIWTELPAYGIHWSGTLEQYFELYKQTALLIKGISPSLKVGPAAE 503 C+NRYG + V W F+ W E P W GT+E+Y ELY +T +K ISP L++G Sbjct: 391 CMNRYGKEEVESWKFEFWNE-PELKAFWPGTMEEYMELYARTYETVKRISPRLQIGAPGR 449 Query: 504 NFHTD-EQLSERLLGFCRE-----NAVPLDFY---------SCNIYHNRVKFKDWLER-S 547 D + + FCRE + VPL FY C++++ F+ +E Sbjct: 450 IITIDGRKFYDEFFAFCRERQCLPDFVPLHFYLHERLNNLEQCDVFNELESFRKLIEEFG 509 Query: 548 QTSPVDIKLIPFQYEAKNHTRHLLEKMHRLLETHYKEDIEFIVTRWNFSWDVTNFLHDTA 607 SP + + L RLLE H + +T WN + +DT Sbjct: 510 GVSP-----------NPDFLKERLAHEKRLLEKHQMPGADLYLTEWNSTSYHRELTNDTL 558 Query: 608 FMATFIIDHMLDHSAAHAKAIGFLSASDILYEWDIKSNPFFGGTGLVNTEGIKKSAYYAF 667 + A +I+ +++D+ + + G+ SD + E + F GG GL+ GI K+ A+ Sbjct: 559 YKAAYIVKNIIDNLDS-IEGFGYWVLSDNIEETAASPDLFHGGLGLIAQHGIPKAGMIAY 617 Query: 668 VFLSKLGSTVFAKGKNYIMTKRGENIQILAYNHTYPDQLFMKGGQP---DQHSYDIFEES 724 L+KLG + +G YI+T Q+L +N+ + D L+ G + Y+ F++ Sbjct: 618 ELLAKLGDHLIERGDRYIVTSGRGGYQVLTFNYCHFDDLYALGDISFIDAVNRYNGFKDV 677 Query: 725 NDLLLNIHLQNI-YGTYKCKQYSLNR 749 + L + L + G Y+ +L R Sbjct: 678 KTVKLELELTGLPSGKYRIVTRTLGR 703 >B2TL43.1 B2TL43_CLOBB Transcriptional regulator, AraC family EC=3.2.1.37 Length = 838 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 188/749 (25%), Positives = 350/749 (46%), Gaps = 35/749 (4%) Query: 16 VHVKINETNSEELHRHSGLEIIWLFTGKLKVTIGQNDYXXXXXXXXXXXXFESHRVIPQA 75 +H+ + + E + H +E+I++ G ++V Y F+ H + Sbjct: 16 MHISVLAIENLERYWHQSIELIYVLAGSVQVQCRNMQYNLHEDDLILINMFDVHAL--SG 73 Query: 76 LNTRFIQLHVDSLYIYKHNHDFYNLNYDLKSFKNSEDNQH-PYDVVRILFSQLVGKGEEN 134 + L +D + F +D S +++ + P + L + E+N Sbjct: 74 DQCEVLSLKIDISALNPEISHFSQKRFDCNSSLEADETKFIPLKRLLALIVKSNVNPEDN 133 Query: 135 KEVL------RLLGYITSRFSKKLSSPEPDNRASNKEFNIVQQILNRVELDFKGKVTLNQ 188 E+L LL +T+ F + ++ D NK ++ ILN + ++ K++LN Sbjct: 134 IELLNKSYVYELLYILTTNFKVEGTTNSTD---INKNSERIKNILNYISENYTKKISLNN 190 Query: 189 IAQEQHYNSSYLSDIFRKNVGVTFKAYLEEVRIRYSLFLLQNQETSITNIALSSGFSDEK 248 +A + + Y+S IF++ +G++F YL EVR+ +++ L N I IA +GFS+ + Sbjct: 191 LADTFYLSMPYISKIFKELIGLSFSDYLTEVRLSHAIKDLANANLKIEYIAEKNGFSNTR 250 Query: 249 SYYKAIKDKFSLTPLQLRKKHLEENHDGL-ALTGSSKEQLIHHYAS-------LPLELKA 300 S+ A K+K+ P + RKK + DG ++T S + H S L ++ Sbjct: 251 SFVSAFKNKYDYLPSKYRKKIDTYSSDGQKSMTESINYFALRHNTSFNRLVDYLKHDIII 310 Query: 301 IEENTIQSTIVK----DIQADGYELKQVWNKIMNIGSANTLLNQNIRDQIKEMREEIPIE 356 EEN +TI + D G +LK + + IG A +L + +++++++I + Sbjct: 311 TEENKPDTTIYEIDPIDTSIKGVQLKHTFKTLTCIGKAKHVLISESQHMLRQVQQDIGFK 370 Query: 357 YLRFEGVFNQELDVIQKDRDGL-KFNWKFINNILDYTRELELKPFICLSYMPLLFASKST 415 Y+RF G+ + E+ ++ +G + + +I+ ++D+ + LKPF+ LS+MP A T Sbjct: 371 YIRFHGLLDDEMMFYSENEEGSPELCFTYIDLVIDFLLSINLKPFMELSFMPKELAMDPT 430 Query: 416 SFFNYQGN-TSPPKEMSQWLSLVQSFMMNCINRYGLDTVSEWYFQIWTELPAYGIHWSGT 474 + G+ S PK M +W ++Q + + I+RYG V W F +W E + Sbjct: 431 RTMFFIGSIISLPKSMEKWTYIIQQLIKHFISRYGKKEVESWPFFLWNEPDLKKMFGFEN 490 Query: 475 LEQYFELYKQTALLIKGISPSLKVGPA---AENFHTDEQLSERLLGFCRENAVPLDFYSC 531 +F YK+T IK I+P + G + A+ + + FC+ N DF + Sbjct: 491 RTNFFNFYKETYETIKMINPYINFGSSPVFADTLAGSNDWLDAFMDFCKLNDCLPDFINM 550 Query: 532 NIYHNRVKFKDWLERSQTSPVDIKLIPFQYEAKNHTRHLLEKM-HRLLETHYKEDIEFIV 590 + Y + +D S+ + +++ E++N ++ + R +E ++ D + + Sbjct: 551 HFYPMNLSGEDATTLSRKAHGEMRRYLVYMESENALNENIQCIKKRFMENNWIAD-KLYL 609 Query: 591 TRWNFSWDVTNFLHDTAFMATFIIDHMLDHSAAHAKAIGFLSASDILYEWDIKSNPFFGG 650 + WN S L+DT + AT+I ++L++ ++ G+ SD E +K+ + GG Sbjct: 610 SGWNSSISYNELLNDTVYKATYIAKNILENYDT-LESFGYWQLSDFTEEVKMKNQLYHGG 668 Query: 651 TGLVNTEGIKKSAYYAFVFLSKLGSTVFAKGKNYIMTKRGENIQILAYNHTYPDQLFMKG 710 G+ GIKKS YY F LSKL + KG + +T G +I+I+ YN+ + +L+ G Sbjct: 669 QGIFTYNGIKKSHYYVFQMLSKLSDRLLEKGDGFFITTDGNSIEIMLYNYQHYSKLYASG 728 Query: 711 GQPD---QHSYDIFEESNDLLLNIHLQNI 736 D H Y F + N L + + L N+ Sbjct: 729 EVFDMTFNHRYKPFPKPNILKVILPLTNL 757 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,485,048,443 Number of extensions: 190670900 Number of successful extensions: 469087 Number of sequences better than 1.0e-05: 891 Number of HSP's gapped: 469483 Number of HSP's successfully gapped: 912 Length of query: 757 Length of database: 3,060,696,203 Length adjustment: 144 Effective length of query: 613 Effective length of database: 1,704,070,043 Effective search space: 1044594936359 Effective search space used: 1044594936359 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)