BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0454.0010.p (321 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q65FZ0.1 Q65FZ0_BACLD YteT 377 e-102 Q9KFJ2.1 Q9KFJ2_BACHD BH0487 protein 372 e-101 O34371.1 YTET_BACSU Putative oxidoreductase yteT EC=1.-.-.- 371 e-101 Q5WIW5.1 Q5WIW5_BACSK Oxidoreductase 363 9e-99 B3KKB8.1 B3KKB8_9BACI Oxidoreductase domain protein 362 3e-98 >Q65FZ0.1 Q65FZ0_BACLD YteT Length = 425 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 173/291 (59%), Positives = 209/291 (71%) Query: 1 MKNYAICGVSNRALIMFIEPLLTTFAGQHRIVALLDSDPLRFEVARSKFPALAGVPVYTP 60 MK YAICG+S RA MFIEPL+ + ++RI ALLD DPLR EV + +FPAL VP + Sbjct: 1 MKKYAICGLSGRAFNMFIEPLVGKYGKENRIAALLDIDPLREEVCKERFPALRPVPFFEE 60 Query: 61 EAFDRMLKETGADTVIVSSRDDTHLDYILASLRHDIDVLAEKPMVIHXXXXXXXXXXXXX 120 +AF ML + D +IV+ RDDTH+ YIL +LR DIDV+ EKPMV Sbjct: 61 KAFTEMLDKIKPDAIIVAGRDDTHVRYILGALRADIDVITEKPMVTTARDAAAVLKAEAE 120 Query: 121 SKGKVTVLFNYRYNPIHRRIKEMILSGKVGRVTSVDLNWYVDTFHGSSYFRRWNRNRELS 180 SKGKVTV FNYRYNP HR+IKE+IL GK+G +TSVDLNWY+DT+HG+SYF+RWNR R S Sbjct: 121 SKGKVTVTFNYRYNPYHRKIKELILDGKLGTITSVDLNWYIDTYHGASYFKRWNRMRAFS 180 Query: 181 GGLSVHKSTHHFDLVNWWLDQKPQEVFAFGGLNYYGADSEHNPSRQDGRYCETCREREDC 240 GGLSVHKSTHHFDLVNWWLDQ P EVFA+GGL YYG E NP + + RYC TC ++ C Sbjct: 181 GGLSVHKSTHHFDLVNWWLDQTPSEVFAYGGLYYYGPRGEMNPEKGENRYCGTCHVKKKC 240 Query: 241 SYVMRWSTVDVRDDHLRAEDNSTPKYTNYRTDACIFDSDISIEDTYAATVK 291 Y MRW D +DDH++ ++ YT+YR DACIFD +I IEDTYAA +K Sbjct: 241 RYYMRWQAGDPQDDHVKTNESQHLLYTDYRPDACIFDEEIDIEDTYAAVLK 291 >Q9KFJ2.1 Q9KFJ2_BACHD BH0487 protein Length = 430 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 168/295 (56%), Positives = 217/295 (73%), Gaps = 4/295 (1%) Query: 1 MKNYAICGVSNRALIMFIEPLLTTFAGQHRIVALLDSDPLRFEVARSKFPALAGVPVYTP 60 MK YAICGVSNRAL MFI P+L +A H++VALLD DP R E+A+ ++P LA V Y Sbjct: 1 MKKYAICGVSNRALRMFIAPILDQYAKNHQVVALLDQDPRRLEIAKEQYPQLASVRGYDD 60 Query: 61 EAFDRMLKETGADTVIVSSRDDTHLDYILASLRHDIDVLAEKPMVIHXXXXXXXXXXXXX 120 ++F++M+ ET D ++V SRDDTH+DYIL L HD+ V+ EKPMV Sbjct: 61 QSFEQMMNETKPDVLLVCSRDDTHIDYILKGLAHDLHVITEKPMVTTAKDAKRVIEAENK 120 Query: 121 SKGKVTVLFNYRYNPIHRRIKEMILSGKVGRVTSVDLNWYVDTFHGSSYFRRWNRNRELS 180 S+GKVTV FNYRY HR+IKE+IL G++GR+TS+D NWY+DT+HG+SYF+RWNR R+ S Sbjct: 121 SRGKVTVTFNYRYGAHHRKIKELILEGRLGRITSIDFNWYIDTYHGASYFKRWNRVRDYS 180 Query: 181 GGLSVHKSTHHFDLVNWWLDQKPQEVFAFGGLNYYGADSEHNPSRQDGRYCETCREREDC 240 GGLS+HKSTHHFDLVNWW+DQ+P E FA+G LNYYGAD E NPS+++GR+C TC E++ C Sbjct: 181 GGLSIHKSTHHFDLVNWWVDQRPIEAFAYGALNYYGADGELNPSKKNGRFCGTCDEQDRC 240 Query: 241 SYVMRWSTVD----VRDDHLRAEDNSTPKYTNYRTDACIFDSDISIEDTYAATVK 291 Y RW+T +DDH+ ++ YT+YR DACIFD +I+IEDTY ATV+ Sbjct: 241 QYYRRWTTRSQSSAAKDDHIEYVPSTAKLYTDYRPDACIFDEEINIEDTYVATVR 295 >O34371.1 YTET_BACSU Putative oxidoreductase yteT EC=1.-.-.- Length = 428 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/296 (59%), Positives = 214/296 (72%), Gaps = 6/296 (2%) Query: 1 MKNYAICGVSNRALIMFIEPLLTTFAGQHRIVALLDSDPLRFEVARSKFPALAGVPVYTP 60 MKN CG+S+RA MFI+PL+ F+ + I LLD+DP RF V + KFP LA VP ++ Sbjct: 1 MKNIVFCGLSSRAFSMFIKPLMERFSTHYEITGLLDADPKRFAVCKKKFPELAHVPEFSE 60 Query: 61 EAFDRMLKETGADTVIVSSRDDTHLDYILASLRHDIDVLAEKPMVIHXXXXXXXXXXXXX 120 +AFD M++ + D VIV+ RDDTH+ YI+ SL+ + DV+ EKPMV Sbjct: 61 DAFDEMMRVSKPDIVIVAGRDDTHVAYIVKSLQWNTDVITEKPMVTTVQDANRVLEAEAK 120 Query: 121 SKGKVTVLFNYRYNPIHRRIKEMILSGKVGRVTSVDLNWYVDTFHGSSYFRRWNRNRELS 180 S+GKVTV FNYRY+P HR+IKEMIL GK+GRVTSVDLNWY+DT+HG+SYF+RWNR+R+ S Sbjct: 121 SEGKVTVAFNYRYSPFHRKIKEMILDGKIGRVTSVDLNWYIDTYHGASYFKRWNRSRQFS 180 Query: 181 GGLSVHKSTHHFDLVNWWLDQKPQEVFAFGGLNYYGADSEHNP-SRQDGRYCETCRERED 239 GGLSVHKSTHHFDLVNWWL Q P+EVFA+G LNYYG DSE NP +DGR+C TCR +E Sbjct: 181 GGLSVHKSTHHFDLVNWWLGQNPEEVFAYGALNYYGPDSEWNPLPEEDGRFCGTCRVKEK 240 Query: 240 CSYVMRW----STVDVRDDHLRAEDNSTPKYTNYRTDACIFDSDISIEDTYAATVK 291 C Y RW S ++DDHL A D S+ YT YR DACIFD +I IEDTY A VK Sbjct: 241 CHYYSRWHPRSSKASIKDDHLEAGDQSS-LYTAYRPDACIFDEEIDIEDTYVAAVK 295 >Q5WIW5.1 Q5WIW5_BACSK Oxidoreductase Length = 428 Score = 363 bits (933), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 169/295 (57%), Positives = 213/295 (72%), Gaps = 5/295 (1%) Query: 1 MKNYAICGVSNRALIMFIEPLLTTFAGQHRIVALLDSDPLRFEVARSKFPALAGVPVYTP 60 M+ ICG+SNRAL MF+EPL+ F + IVALLD DP R EV +PALA Y P Sbjct: 1 MERVVICGLSNRALKMFVEPLIARFHHDNEIVALLDIDPKRHEVCLQTYPALANATFYRP 60 Query: 61 EAFDRMLKETGADTVIVSSRDDTHLDYILASLRHDIDVLAEKPMVIHXXXXXXXXXXXXX 120 + F++M+KET A +V+SRDDTH+DYIL L +++++EKPMV Sbjct: 61 DQFEQMVKETNATMAVVASRDDTHVDYILRGLALGLNIISEKPMVTTSEDARRVLEAEKA 120 Query: 121 SKGKVTVLFNYRYNPIHRRIKEMILSGKVGRVTSVDLNWYVDTFHGSSYFRRWNRNRELS 180 SKGKVTV FNYRYNP H +IKE+I SG++GR+TS+DLNWY+DT+HGSSYF+RWNRNR S Sbjct: 121 SKGKVTVAFNYRYNPYHIKIKELIQSGRIGRITSIDLNWYIDTYHGSSYFKRWNRNRAFS 180 Query: 181 GGLSVHKSTHHFDLVNWWLDQKPQEVFAFGGLNYYGADSEHNPSRQDGRYCETCREREDC 240 GGLSVHKSTHHFDLVNWW++Q+PQEVFAFG L+YYGA SE NP ++GR+C TC +R++C Sbjct: 181 GGLSVHKSTHHFDLVNWWINQRPQEVFAFGDLHYYGAKSELNPRLENGRHCGTCSDRQNC 240 Query: 241 SYVMRW----STVDVRDDHLRAEDNSTPKYTNYRTDACIFDSDISIEDTYAATVK 291 SY RW + ++DDHL A + YT YR DAC+FD +I IEDTY A V+ Sbjct: 241 SYYRRWFGRNQSTQIKDDHLMAGQD-LGAYTGYRPDACVFDEEIDIEDTYVANVR 294 >B3KKB8.1 B3KKB8_9BACI Oxidoreductase domain protein Length = 433 Score = 362 bits (929), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 173/292 (59%), Positives = 208/292 (71%), Gaps = 2/292 (0%) Query: 2 KNYAICGVSNRALIMFIEPLLTTFAGQHRIVALLDSDPLRFEVARSKFPALAGVPVYTPE 61 K YAICGVS RAL MF +P+LTT A + +VA+LD DP RFE+ RS+FP V Y E Sbjct: 3 KKYAICGVSGRALGMFAKPILTTHARRCNLVAILDCDPARFELYRSRFPEHTAVGTYGEE 62 Query: 62 AFDRMLKETGADTVIVSSRDDTHLDYILASLRHDIDVLAEKPMVIHXXXXXXXXXXXXXS 121 F +M+ ET D VIV+ RDDTH YI+A+L D+DV+ EKPMV S Sbjct: 63 EFGKMIGETRPDVVIVAGRDDTHARYIVAALERDLDVITEKPMVTTGEDARRVLDAERVS 122 Query: 122 KGKVTVLFNYRYNPIHRRIKEMILSGKVGRVTSVDLNWYVDTFHGSSYFRRWNRNRELSG 181 KG VTV FNYRY PIH +IKEM+ GK+GR+TSVDLNWY+DT+HGSSYF+RWNR RE+SG Sbjct: 123 KGSVTVTFNYRYAPIHAKIKEMVWEGKLGRITSVDLNWYLDTYHGSSYFKRWNRRREMSG 182 Query: 182 GLSVHKSTHHFDLVNWWLDQKPQEVFAFGGLNYYGADSEHNPSRQDGRYCETCREREDCS 241 GLS+HKSTHHFDLVNWW+ QKP E FA+G L+YYGA E NP ++DGR+C TC C+ Sbjct: 183 GLSIHKSTHHFDLVNWWIGQKPVEAFAYGALHYYGAQGELNPGKEDGRHCGTCLSASRCA 242 Query: 242 YVMRWSTVDVRDDHLRAEDNSTPK--YTNYRTDACIFDSDISIEDTYAATVK 291 Y RW+T V+DDHL D+ + YT YR D CIFD +I IEDTYAATVK Sbjct: 243 YHSRWNTRHVQDDHLGQLDSGGSQFPYTGYRPDRCIFDDEIDIEDTYAATVK 294 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.137 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,887,130,260 Number of extensions: 75962589 Number of successful extensions: 142208 Number of sequences better than 1.0e-05: 364 Number of HSP's gapped: 142970 Number of HSP's successfully gapped: 364 Length of query: 321 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 186 Effective length of database: 1,788,859,178 Effective search space: 332727807108 Effective search space used: 332727807108 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)