BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0454.0008.p (277 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1WTG0.1 C1WTG0_9ACTO Carbohydrate ABC transporter membrane prot... 300 6e-80 Q6W2E8.1 Q6W2E8_RHISN Oligogalacturonate transport system permea... 290 7e-77 C1PR14.1 C1PR14_ALIAC Carbohydrate ABC transporter membrane prot... 287 6e-76 B5ZVX9.1 B5ZVX9_RHILW Binding-protein-dependent transport system... 287 8e-76 B9MNB3.1 B9MNB3_ANATD Binding-protein-dependent transport system... 287 9e-76 >C1WTG0.1 C1WTG0_9ACTO Carbohydrate ABC transporter membrane protein 2, CUT1 family Length = 292 Score = 300 bits (769), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 135/268 (50%), Positives = 198/268 (73%), Gaps = 1/268 (0%) Query: 10 KNILLVLMALTMVYPIIWLLLGSFKANDEIFTATSLWPSQFYWSNYSDGWGAVPGFTFGK 69 K+ L++L M+YP++WLL SFK ++ IF SL PS+ + NY+DGW A+ F Sbjct: 26 KHALIILFGFVMLYPLLWLLSSSFKPSEVIFREPSLLPSKVQFDNYTDGWTAL-AHPFEH 84 Query: 70 FILNSLLISMLCVAGCLLSSSLVAFPFARMNFPLKKIWFAILLGTLMLPTQVLLIPRYVM 129 +++NS +I++L + G LL+ SL A+ FAR+ FPLKK+WFA++LGT+MLP VL++P+YV+ Sbjct: 85 YLMNSAVIAVLAIIGNLLTCSLAAYAFARVEFPLKKLWFALMLGTIMLPIHVLIVPQYVL 144 Query: 130 FSNFGWINTILPLIIPYFVASNAFFVYLMIQFMRGIPRELDEAALMDGCGPFRTFYNILL 189 FS WINTILPL++P F+A +AFFV+LM+QF+RG+PRELDEAA +DGCG FR + I++ Sbjct: 145 FSKLDWINTILPLVVPKFLAHDAFFVFLMVQFIRGLPRELDEAARLDGCGHFRIYARIVM 204 Query: 190 PNCKPVLYTMGIFAFLWSWDDYFDQLLYLNEVRKYTVPLALQMFVDNAAQINWGSLFAMS 249 P C P L T +F F+W+W+D+F QL++L + KYTVP+AL+ F+D Q +WG LFAMS Sbjct: 205 PLCLPALATSAVFTFIWTWNDFFSQLIFLTDPDKYTVPVALRSFMDAQGQTSWGPLFAMS 264 Query: 250 IIAIIPPVLIFFVAQKHFVEGVATSGIK 277 ++A++P F Q++ G+AT+G+K Sbjct: 265 VVALVPIFGFFLAGQRYLTRGIATTGLK 292 >Q6W2E8.1 Q6W2E8_RHISN Oligogalacturonate transport system permease protein OgtB Length = 295 Score = 290 bits (743), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 131/264 (49%), Positives = 198/264 (75%), Gaps = 1/264 (0%) Query: 14 LVLMALTMVYPIIWLLLGSFKANDEIFTATSLWPSQFYWSNYSDGWGAVPGFTFGKFILN 73 L+ ++ M+YP++W+L S + DEIF +T+LWPS +++Y GW + +FG+F N Sbjct: 32 LIAASIAMLYPLLWMLSASVRPEDEIFASTTLWPSSVDFASYVRGWFGL-DVSFGRFTWN 90 Query: 74 SLLISMLCVAGCLLSSSLVAFPFARMNFPLKKIWFAILLGTLMLPTQVLLIPRYVMFSNF 133 SL+I++L VAG +++ SL A+ FAR+ F + WFA++LGT+M+P V LIP+YV+F + Sbjct: 91 SLVIAVLTVAGNVIACSLAAYAFARLRFAGRNFWFAMMLGTMMIPYHVTLIPQYVLFLDL 150 Query: 134 GWINTILPLIIPYFVASNAFFVYLMIQFMRGIPRELDEAALMDGCGPFRTFYNILLPNCK 193 GW+NTILPL++P F+AS+AFF++LM+QF RGIPRELDEAA+MDGCGP+R ++ I+LP Sbjct: 151 GWVNTILPLVVPKFLASDAFFIFLMVQFFRGIPRELDEAAMMDGCGPWRIYWKIMLPLSL 210 Query: 194 PVLYTMGIFAFLWSWDDYFDQLLYLNEVRKYTVPLALQMFVDNAAQINWGSLFAMSIIAI 253 PVL T IF+F+W+WDD+F L+YLN++ YT+ L L+ FVD+++ +WG LFAMS +++ Sbjct: 211 PVLATAAIFSFIWTWDDFFGPLIYLNDMNTYTIQLGLRTFVDSSSTSDWGGLFAMSTLSL 270 Query: 254 IPPVLIFFVAQKHFVEGVATSGIK 277 +P F Q+ +EG+AT+G+K Sbjct: 271 VPVFFFFLFFQRLLIEGIATTGMK 294 >C1PR14.1 C1PR14_ALIAC Carbohydrate ABC transporter membrane protein 2, CUT1 family Length = 281 Score = 287 bits (735), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 134/274 (48%), Positives = 191/274 (69%), Gaps = 1/274 (0%) Query: 4 KTSAIAKNILLVLMALTMVYPIIWLLLGSFKANDEIFTATSLWPSQFYWSNYSDGWGAVP 63 + + + +LV++ ++YP++W++ GSFK +EIF++ S WP + ++NY GW A+P Sbjct: 8 RRGIVLAHAVLVIIGFFLIYPVLWMVFGSFKPTNEIFSSASFWPKHWTFANYPQGWNAIP 67 Query: 64 GFTFGKFILNSLLISMLCVAGCLLSSSLVAFPFARMNFPLKKIWFAILLGTLMLPTQVLL 123 G FG FIL+SL +S L G ++SS++VAF FAR F K I F I++ T+MLPTQV L Sbjct: 68 GLPFGTFILHSLSVSCLVSVGTVISSAIVAFGFARFTFRGKSILFGIMMITMMLPTQVTL 127 Query: 124 IPRYVMFSNFGWINTILPLIIPYFVASNAFFVYLMIQFMRGIPRELDEAALMDGCGPFRT 183 IP+Y MF + GWINT PLI+P F S FF++L++QF+RG+P+ELDEAA +DGC F Sbjct: 128 IPQYAMFHDLGWINTYYPLIVPAFFGS-PFFIFLIVQFIRGLPKELDEAAKIDGCNAFTL 186 Query: 184 FYNILLPNCKPVLYTMGIFAFLWSWDDYFDQLLYLNEVRKYTVPLALQMFVDNAAQINWG 243 F ++LP P L T IF+F+W WDD+F QL+YLN +K+TVPL L+ + AQ WG Sbjct: 187 FVRVILPLIVPALITTAIFSFIWCWDDFFSQLIYLNSAQKFTVPLGLESLANAVAQEEWG 246 Query: 244 SLFAMSIIAIIPPVLIFFVAQKHFVEGVATSGIK 277 LFAMS +++IP LIFF QK+ V G+AT+G++ Sbjct: 247 PLFAMSTVSLIPLFLIFFFLQKYVVRGIATTGLR 280 >B5ZVX9.1 B5ZVX9_RHILW Binding-protein-dependent transport systems inner membrane component Length = 292 Score = 287 bits (734), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 134/272 (49%), Positives = 198/272 (72%), Gaps = 1/272 (0%) Query: 6 SAIAKNILLVLMALTMVYPIIWLLLGSFKANDEIFTATSLWPSQFYWSNYSDGWGAVPGF 65 +++ + LL+ ++ MVYP++W++ S + EIF++TSL PS +S+Y+ GW + Sbjct: 21 ASLVIHALLIAASILMVYPLLWMVSASVRPETEIFSSTSLIPSSIDFSSYARGWVGL-DV 79 Query: 66 TFGKFILNSLLISMLCVAGCLLSSSLVAFPFARMNFPLKKIWFAILLGTLMLPTQVLLIP 125 +FG+F NSL+IS+L V G +++ SL AF FAR+ F + WFAI+LGTLM+P V LIP Sbjct: 80 SFGRFFWNSLVISLLVVTGNVIACSLTAFAFARLRFAGRNFWFAIMLGTLMIPYHVTLIP 139 Query: 126 RYVMFSNFGWINTILPLIIPYFVASNAFFVYLMIQFMRGIPRELDEAALMDGCGPFRTFY 185 +YV+F N GW+NTILPL++P F+AS+AFF++LM+QF RGIPRELDEAA+MDGC +R ++ Sbjct: 140 QYVLFLNLGWVNTILPLVVPKFLASDAFFIFLMVQFFRGIPRELDEAAMMDGCSAWRIYW 199 Query: 186 NILLPNCKPVLYTMGIFAFLWSWDDYFDQLLYLNEVRKYTVPLALQMFVDNAAQINWGSL 245 I+LP PVL T IF+F+W+WDD+F L+YLN++ YT+ L L+ FVD+ + +WG L Sbjct: 200 KIMLPLSLPVLATAAIFSFIWTWDDFFGPLIYLNDMNTYTIQLGLRTFVDSTSASDWGGL 259 Query: 246 FAMSIIAIIPPVLIFFVAQKHFVEGVATSGIK 277 FAMS + ++P F Q+ +EG+AT+G+K Sbjct: 260 FAMSTLTLVPVFFFFLFFQRLLIEGIATTGMK 291 >B9MNB3.1 B9MNB3_ANATD Binding-protein-dependent transport systems inner membrane component Length = 285 Score = 287 bits (734), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 132/264 (50%), Positives = 193/264 (73%) Query: 14 LVLMALTMVYPIIWLLLGSFKANDEIFTATSLWPSQFYWSNYSDGWGAVPGFTFGKFILN 73 L+L L M+YP++W++ +FK+NDEIF + SL+P + ++ GW +TFG+F N Sbjct: 21 LILFGLFMIYPLLWVVSAAFKSNDEIFKSLSLFPQKIVTDSFIKGWQGTGQYTFGRFFAN 80 Query: 74 SLLISMLCVAGCLLSSSLVAFPFARMNFPLKKIWFAILLGTLMLPTQVLLIPRYVMFSNF 133 +L++ + V ++SS+LVA+ FAR NFPLK+++F IL+ TLMLP V LIPRY++F+ F Sbjct: 81 NLILVIPVVFFTIISSTLVAYGFARFNFPLKRLFFVILISTLMLPDSVNLIPRYILFNAF 140 Query: 134 GWINTILPLIIPYFVASNAFFVYLMIQFMRGIPRELDEAALMDGCGPFRTFYNILLPNCK 193 GW+++ P IIP AS FFV++MIQFMRG+PRE++EAA++DGC F+ I P CK Sbjct: 141 GWVDSYKPFIIPSMFASTPFFVFMMIQFMRGLPREIEEAAIIDGCNSFQILLRITGPLCK 200 Query: 194 PVLYTMGIFAFLWSWDDYFDQLLYLNEVRKYTVPLALQMFVDNAAQINWGSLFAMSIIAI 253 + +MGIF F+W+W+D+ L+Y+N V KYT+ L L+M VD+AA I W + AM++IA+ Sbjct: 201 TAMISMGIFQFIWTWNDFLGPLIYINSVEKYTIALGLRMCVDSAAAIAWNQIMAMTVIAM 260 Query: 254 IPPVLIFFVAQKHFVEGVATSGIK 277 +P ++IFF AQK+FVEG+ATSGIK Sbjct: 261 LPCIIIFFAAQKYFVEGIATSGIK 284 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.144 0.468 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,597,447,856 Number of extensions: 64134612 Number of successful extensions: 236515 Number of sequences better than 1.0e-05: 6312 Number of HSP's gapped: 226825 Number of HSP's successfully gapped: 6312 Length of query: 277 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 143 Effective length of database: 1,798,280,193 Effective search space: 257154067599 Effective search space used: 257154067599 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)