BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0454.0001.p
         (220 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B0ML14.1 B0ML14_9FIRM Putative uncharacterized protein                104   5e-21
Q186C7.1 Q186C7_CLOD6 Putative transcriptional regulator               77   1e-12
B9DYM6.1 B9DYM6_CLOK1 Putative uncharacterized protein                 77   1e-12
A5N522.1 A5N522_CLOK5 Transcriptional regulator                        77   1e-12
B5CRR4.1 B5CRR4_9FIRM Putative uncharacterized protein                 76   3e-12

>B0ML14.1 B0ML14_9FIRM Putative uncharacterized protein
          Length = 380

 Score =  104 bits (260), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 71/96 (73%), Gaps = 7/96 (7%)

Query: 27  MQIRIGENLRKLRIKNELTQEKLAEVFGVSPQAISRWENNSAYPDVTMLPSLANYYNTSI 86
           + +++GENL+K R++ ELTQE+LA+V GVS QA+SRWEN S YPD+T+LP++A+Y+  ++
Sbjct: 12  LGLKLGENLKKFRLQRELTQEQLADVLGVSAQAVSRWENGSTYPDITLLPTIASYFEITL 71

Query: 87  DELIGMDDIRNVEKINSTFSIVHE-------YENIL 115
           DEL+GM++ R+ E++      + E       YENIL
Sbjct: 72  DELMGMENWRSEEQLKELLGQLEENGSKGLIYENIL 107


>Q186C7.1 Q186C7_CLOD6 Putative transcriptional regulator
          Length = 404

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 52/65 (80%)

Query: 27 MQIRIGENLRKLRIKNELTQEKLAEVFGVSPQAISRWENNSAYPDVTMLPSLANYYNTSI 86
          MQI+IG+ +++LR +  LTQE+LA+  GVS  A+S+WE+ ++YPD+ +LP LA+++N SI
Sbjct: 1  MQIKIGKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSI 60

Query: 87 DELIG 91
          D+L+ 
Sbjct: 61 DKLLN 65


>B9DYM6.1 B9DYM6_CLOK1 Putative uncharacterized protein
          Length = 368

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 50/63 (79%)

Query: 28 QIRIGENLRKLRIKNELTQEKLAEVFGVSPQAISRWENNSAYPDVTMLPSLANYYNTSID 87
          +++IGE + KLR K E+TQE+L +  GVS  A+S+WE  ++YPD+T+LP LA+++N SID
Sbjct: 3  KLQIGEVILKLRKKREITQEQLGKFIGVSTAAVSKWEVGNSYPDITLLPVLASFFNISID 62

Query: 88 ELI 90
          EL+
Sbjct: 63 ELL 65


>A5N522.1 A5N522_CLOK5 Transcriptional regulator
          Length = 368

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 50/63 (79%)

Query: 28 QIRIGENLRKLRIKNELTQEKLAEVFGVSPQAISRWENNSAYPDVTMLPSLANYYNTSID 87
          +++IGE + KLR K E+TQE+L +  GVS  A+S+WE  ++YPD+T+LP LA+++N SID
Sbjct: 3  KLQIGEVILKLRKKREITQEQLGKFIGVSTAAVSKWEVGNSYPDITLLPVLASFFNISID 62

Query: 88 ELI 90
          EL+
Sbjct: 63 ELL 65


>B5CRR4.1 B5CRR4_9FIRM Putative uncharacterized protein
          Length = 368

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 52/79 (65%)

Query: 28  QIRIGENLRKLRIKNELTQEKLAEVFGVSPQAISRWENNSAYPDVTMLPSLANYYNTSID 87
           +I I + L   R + ++TQE+LA   GVS  A+S+WE+  ++PD+T+LP LA Y+N SID
Sbjct: 3   EINIAKQLLAARHEKKITQEELASYVGVSKAAVSKWESGVSFPDITLLPKLATYFNVSID 62

Query: 88  ELIGMDDIRNVEKINSTFS 106
           ELIG +     E+I   +S
Sbjct: 63  ELIGYEPQLTREQIKELYS 81


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.131    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,038,965,301
Number of extensions: 43573611
Number of successful extensions: 127917
Number of sequences better than 1.0e-05: 514
Number of HSP's gapped: 128016
Number of HSP's successfully gapped: 516
Length of query: 220
Length of database: 3,060,696,203
Length adjustment: 130
Effective length of query: 90
Effective length of database: 1,835,964,253
Effective search space: 165236782770
Effective search space used: 165236782770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)