BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0450.0030.p (226 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D8Q0.1 B1D8Q0_9BACL Two component transcriptional regulator, w... 298 2e-79 B1DL05.1 B1DL05_9BACL Two component transcriptional regulator, w... 290 5e-77 B3KBY2.1 B3KBY2_9BACI Response regulator receiver 286 1e-75 C3J2W9.1 C3J2W9_9BACI Two component transcriptional regulator, w... 284 3e-75 B7YD53.1 B7YD53_9BACI Two component transcriptional regulator, w... 284 3e-75 >B1D8Q0.1 B1D8Q0_9BACL Two component transcriptional regulator, winged helix family Length = 224 Score = 298 bits (764), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 146/222 (65%), Positives = 177/222 (79%), Gaps = 1/222 (0%) Query: 1 MPKVLVVDDDANIRELVRLYLEDEGIEVVQKGNGAEALEYAENYPPDLVVLDIMMPGMDG 60 MPK+LVVDDD NIRELV L+L EG EV++ NG +AL E PDL V+D+MMP MDG Sbjct: 1 MPKILVVDDDPNIRELVSLFLRREGYEVIEATNGEDALNRLEAVKPDLAVIDVMMPKMDG 60 Query: 61 WALCARLRELGDMPVLMITAKGEPADRIKGFKLGTDDYLVKPFDPMELALRVKALLKRYR 120 WALC+ LRE DMP+LM+TAKGE A ++KGF+LG DDY+VKPFDP EL +RVKALLKRYR Sbjct: 61 WALCSALRESFDMPLLMLTAKGETAHKVKGFELGADDYVVKPFDPPELIVRVKALLKRYR 120 Query: 121 IAYSQTIRLGDLRLDRKSYQVVNKDGLELTLPMKEFELLYKLGSYPGQLFTRNHLIAEIW 180 IA SQ + LG L ++R +Q+V +G ++ LP KEFELL+KL SYPG+ FTR HLI ++W Sbjct: 121 IASSQVVELGGLSMNRSDFQLV-ANGEKILLPPKEFELLFKLASYPGKTFTREHLIEQLW 179 Query: 181 GIDYEGDERTVDVHIKRLRERFAGHESDFRIVTLRGLGYRLE 222 G++YEGDERTVDVHIKRLRERF + FRIVT+RGLGYRLE Sbjct: 180 GMNYEGDERTVDVHIKRLRERFPEEDFGFRIVTIRGLGYRLE 221 >B1DL05.1 B1DL05_9BACL Two component transcriptional regulator, winged helix family Length = 224 Score = 290 bits (743), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 141/223 (63%), Positives = 175/223 (78%), Gaps = 1/223 (0%) Query: 1 MPKVLVVDDDANIRELVRLYLEDEGIEVVQKGNGAEALEYAENYPPDLVVLDIMMPGMDG 60 M +LVVDDD +IREL+ YL+ EG EV++ +G EAL ++ DLV++D+MMP MDG Sbjct: 1 MACILVVDDDLHIRELISHYLKVEGFEVLEASDGVEALTILDSAKADLVIMDVMMPNMDG 60 Query: 61 WALCARLRELGDMPVLMITAKGEPADRIKGFKLGTDDYLVKPFDPMELALRVKALLKRYR 120 W LCA +R+ D+P LM+TAKGE A ++KGF+LG DDYLVKPF+P+EL RVKALLKRYR Sbjct: 61 WELCAEIRDHYDLPRLMLTAKGETAQKLKGFELGADDYLVKPFEPLELIARVKALLKRYR 120 Query: 121 IAYSQTIRLGDLRLDRKSYQVVNKDGLELTLPMKEFELLYKLGSYPGQLFTRNHLIAEIW 180 IA SQT++ GDL LDRK+Y VV +G +TLP+KEFELL+KL SYPGQ F+R LI EIW Sbjct: 121 IASSQTVQAGDLILDRKTY-VVQVNGQSMTLPLKEFELLFKLASYPGQSFSRGQLIEEIW 179 Query: 181 GIDYEGDERTVDVHIKRLRERFAGHESDFRIVTLRGLGYRLEV 223 G D+EG+ERT+DVHI RLRERF + FRI T+RGLGYRLEV Sbjct: 180 GYDFEGNERTLDVHINRLRERFPESQHTFRISTIRGLGYRLEV 222 >B3KBY2.1 B3KBY2_9BACI Response regulator receiver Length = 224 Score = 286 bits (731), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 146/226 (64%), Positives = 176/226 (77%), Gaps = 5/226 (2%) Query: 1 MPKVLVVDDDANIRELVRLYLEDEGIEVVQKGNGAEALEYAENYPPDLVVLDIMMPGMDG 60 MP +LV DDDANIRELV L+L ++G V+ +G EAL + P DLVVLDIMMP MDG Sbjct: 1 MPTILVADDDANIRELVCLFLRNDGFTTVEAADGKEALSVYGSTPVDLVVLDIMMPMMDG 60 Query: 61 WALCARLRELG-DMPVLMITAKGEPADRIKGFKLGTDDYLVKPFDPMELALRVKALLKRY 119 W LC LR D+P+LM+TA+GE +++KGF+LGTDDYL KPFDP+EL +RVKALLKRY Sbjct: 61 WTLCKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRY 120 Query: 120 RIAYSQTIRLGDLRLDRKSYQVVNKDGLE-LTLPMKEFELLYKLGSYPGQLFTRNHLIAE 178 RI +QTI+ G++ LDR++Y+V G E LTLP+KEFELLYKL PGQ++TR LI + Sbjct: 121 RIGSTQTIQFGNVILDRQTYKV--SSGPETLTLPLKEFELLYKLAGTPGQVYTREQLIDQ 178 Query: 179 IWGIDYEGDERTVDVHIKRLRERFAGHESDFRIVTLRGLGYRLEVY 224 IWGIDY GD+RTVDVHIKRLRERFA DFRI T+RGLGYRLEVY Sbjct: 179 IWGIDYAGDDRTVDVHIKRLRERFA-TTPDFRIETVRGLGYRLEVY 223 >C3J2W9.1 C3J2W9_9BACI Two component transcriptional regulator, winged helix family Length = 224 Score = 284 bits (727), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 141/225 (62%), Positives = 172/225 (76%), Gaps = 1/225 (0%) Query: 1 MPKVLVVDDDANIRELVRLYLEDEGIEVVQKGNGAEALEYAENYPPDLVVLDIMMPGMDG 60 M ++LVVDDDA+IRELV +L EG + + NG EAL+ E DLV++DIMMP MDG Sbjct: 1 MARILVVDDDAHIRELVSHFLSLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMDG 60 Query: 61 WALCARLRELGDMPVLMITAKGEPADRIKGFKLGTDDYLVKPFDPMELALRVKALLKRYR 120 W LC LR+ D+P+LM+TAKGE ++KGF+LG DDYLVKPFDP+EL RVKALLKRYR Sbjct: 61 WELCRELRDYDDVPILMLTAKGETKQKVKGFELGADDYLVKPFDPLELVARVKALLKRYR 120 Query: 121 IAYSQTIRLGDLRLDRKSYQVVNKDGLELTLPMKEFELLYKLGSYPGQLFTRNHLIAEIW 180 I SQ +++G L L+RK+Y+ D E+TLP KEFELL+KL SYPG+ FTR+ LI +IW Sbjct: 121 ITTSQIVQIGHLSLNRKTYECRLGDQ-EITLPPKEFELLFKLASYPGKTFTRDELIEQIW 179 Query: 181 GIDYEGDERTVDVHIKRLRERFAGHESDFRIVTLRGLGYRLEVYR 225 G DYEGDERTVDVHIKRLRERFA +S F I T+RGLGYRLE + Sbjct: 180 GYDYEGDERTVDVHIKRLRERFAQPDSPFSIRTIRGLGYRLEACQ 224 >B7YD53.1 B7YD53_9BACI Two component transcriptional regulator, winged helix family Length = 224 Score = 284 bits (727), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 141/225 (62%), Positives = 172/225 (76%), Gaps = 1/225 (0%) Query: 1 MPKVLVVDDDANIRELVRLYLEDEGIEVVQKGNGAEALEYAENYPPDLVVLDIMMPGMDG 60 M ++LVVDDDA+IRELV +L EG + + NG EAL+ E DLV++DIMMP MDG Sbjct: 1 MARILVVDDDAHIRELVSHFLSLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMDG 60 Query: 61 WALCARLRELGDMPVLMITAKGEPADRIKGFKLGTDDYLVKPFDPMELALRVKALLKRYR 120 W LC LR+ D+P+LM+TAKGE ++KGF+LG DDYLVKPFDP+EL RVKALLKRYR Sbjct: 61 WELCRELRDYDDVPILMLTAKGETKQKVKGFELGADDYLVKPFDPLELVARVKALLKRYR 120 Query: 121 IAYSQTIRLGDLRLDRKSYQVVNKDGLELTLPMKEFELLYKLGSYPGQLFTRNHLIAEIW 180 I SQ +++G L L+RK+Y+ D E+TLP KEFELL+KL SYPG+ FTR+ LI +IW Sbjct: 121 ITTSQIVQIGHLSLNRKTYECRLGDQ-EITLPPKEFELLFKLASYPGKTFTRDELIEQIW 179 Query: 181 GIDYEGDERTVDVHIKRLRERFAGHESDFRIVTLRGLGYRLEVYR 225 G DYEGDERTVDVHIKRLRERFA +S F I T+RGLGYRLE + Sbjct: 180 GYDYEGDERTVDVHIKRLRERFAQPDSPFSIRTIRGLGYRLEACQ 224 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.144 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,396,505,598 Number of extensions: 59424125 Number of successful extensions: 254202 Number of sequences better than 1.0e-05: 35134 Number of HSP's gapped: 220009 Number of HSP's successfully gapped: 35495 Length of query: 226 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 95 Effective length of database: 1,826,543,238 Effective search space: 173521607610 Effective search space used: 173521607610 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)