BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0450.0029.p (411 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D8Q1.1 B1D8Q1_9BACL Sensor protein EC=2.7.13.3 278 8e-73 C2SMU9.1 C2SMU9_BACCE Putative uncharacterized protein 266 4e-69 A9VMP1.1 A9VMP1_BACWK Sensor protein EC=2.7.13.3 266 4e-69 C2PYI1.1 C2PYI1_BACCE Putative uncharacterized protein 264 1e-68 B3K8P6.1 B3K8P6_9BACI Sensor protein EC=2.7.13.3 262 5e-68 >B1D8Q1.1 B1D8Q1_9BACL Sensor protein EC=2.7.13.3 Length = 460 Score = 278 bits (710), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 140/292 (47%), Positives = 195/292 (66%), Gaps = 1/292 (0%) Query: 117 TELLTVFLIGXXXXXXAARSIVKPLLRLRDAAGQMAQGHFDMQLRTNRKDEIGQLNTSFN 176 T L+T+ ++G AAR +VKPL + A ++A+G F +QL + K+E+G+L S N Sbjct: 164 TILITLLVVGCILILFAARYLVKPLKMMTAATTRIAKGDFGVQLPMSHKNELGELADSIN 223 Query: 177 EMAQELAKLDRMRREFVANVSHEIQSPLTSISGFAKALKQKRMSEESRMHYLTXXXXXXX 236 MA L++L+ MRR+FV+NVSHEIQSPLTSI GFA+AL+ + ++E R Y+ Sbjct: 224 RMAHSLSQLETMRRDFVSNVSHEIQSPLTSIGGFAEALRSEDLTEGDRNRYVGIIKQESS 283 Query: 237 XXXXXXQNLLRLSSLQHDRHPAQPAAFRLDEQLRKVVIALEPQWSGKEIAVELDLEPVTV 296 +NLL+L+SL + HP +P +RLD QLR VV++ EP W K + VEL +E + Sbjct: 284 RLSRLSENLLKLASLDSEHHPYKPVTYRLDRQLRDVVLSCEPTWLAKRLTVELLMEETVI 343 Query: 297 HADEDQLSQVWTNLLGNSIKFTPVHGRICIRVYAGGRSAVVRITDNGIGIPEDQRTDIFK 356 ADEDQLSQVW NLL NSIKFTP G+I ++ AVVRI+D G GIPE++R +F+ Sbjct: 344 KADEDQLSQVWINLLTNSIKFTPEEGKISFQLSEKNGYAVVRISDTGSGIPEEERDRVFE 403 Query: 357 PFHKVDKARDRAVSGNGLGLSIVKLIVELHEGEIRADEEPGGGSVFTVKLPL 408 F+K+D +RDR+ G+GLGLSIVK I+++H G I E+ G+VF V+LPL Sbjct: 404 RFYKIDPSRDRSEGGSGLGLSIVKKIIDIHGGTIEI-EDAEQGAVFVVRLPL 454 >C2SMU9.1 C2SMU9_BACCE Putative uncharacterized protein Length = 429 Score = 266 bits (679), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 151/410 (36%), Positives = 231/410 (56%), Gaps = 17/410 (4%) Query: 9 GKQIIQTYRSSAGTELIPFMNNVSSISIYAVQLFDASGN-----PLLEDRSEPVVPGSER 63 G+ I++ Y++ E F++ + + Y +++++A+G L + PV E+ Sbjct: 22 GQDIVRIYKTFPLREADLFVSEMKQLDSYYIRIYEATGQFKSYGKLHGHKPAPVT--MEQ 79 Query: 64 IRHVLSGGVTRNIEHEGRYPMVGLPFPVDGQSYALFVMLKGNELWLQSSKEVNTELLTVF 123 ++ VL GGV ++ + ++GLP + + A+F+ E S T+ VF Sbjct: 80 LKKVLDGGVVQDTPNGIATVLLGLPLKTEMGTKAIFL-----EALAPPSASFVTKWALVF 134 Query: 124 -----LIGXXXXXXAARSIVKPLLRLRDAAGQMAQGHFDMQLRTNRKDEIGQLNTSFNEM 178 + G A+ +V+P+ +L A ++A G F+++L + E+G L SF EM Sbjct: 135 ATCSLIAGSLLILVASVFLVRPIKKLTKATKRIASGDFNVKLNIKQTSELGTLARSFEEM 194 Query: 179 AQELAKLDRMRREFVANVSHEIQSPLTSISGFAKALKQKRMSEESRMHYLTXXXXXXXXX 238 +L +L++MRREFV NVSHE+QSPLTSISG+A LKQ +SE R YL Sbjct: 195 MHDLQQLEQMRREFVTNVSHEVQSPLTSISGYALVLKQVDLSEYERSRYLDIIIAEAKRM 254 Query: 239 XXXXQNLLRLSSLQHDRHPAQPAAFRLDEQLRKVVIALEPQWSGKEIAVELDLEPVTVHA 298 NLL+LS L+ + LDEQ+R++++AL+PQWS ++I ELDL+ V V A Sbjct: 255 SKMSDNLLKLSFLESQSKQLRLVTLSLDEQIRRIIVALQPQWSARDIHFELDLQTVKVTA 314 Query: 299 DEDQLSQVWTNLLGNSIKFTPVHGRICIRVYAGGRSAVVRITDNGIGIPEDQRTDIFKPF 358 D D L+QVWTN+L NSIKF+ G I + + ++ + I+D GIGI D + IF F Sbjct: 315 DHDLLNQVWTNILRNSIKFSEDAGVINVSIKQDIKNVTILISDTGIGIHLDDQKRIFDRF 374 Query: 359 HKVDKARDRAVSGNGLGLSIVKLIVELHEGEIRADEEPGGGSVFTVKLPL 408 K D++ R G+G+GL+IVK IV LH+G+IR EPG G+ F V LP+ Sbjct: 375 FKADRSHSRKYDGSGMGLAIVKQIVSLHQGDIRVKSEPGQGTTFIVTLPI 424 >A9VMP1.1 A9VMP1_BACWK Sensor protein EC=2.7.13.3 Length = 455 Score = 266 bits (679), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 151/410 (36%), Positives = 231/410 (56%), Gaps = 17/410 (4%) Query: 9 GKQIIQTYRSSAGTELIPFMNNVSSISIYAVQLFDASGN-----PLLEDRSEPVVPGSER 63 G+ I++ Y++ E F++ + + Y +++++A+G L + PV E+ Sbjct: 48 GQDIVRIYKTFPLREADLFVSEMKQLDSYYIRIYEATGQFKSYGKLHGHKPAPVT--MEQ 105 Query: 64 IRHVLSGGVTRNIEHEGRYPMVGLPFPVDGQSYALFVMLKGNELWLQSSKEVNTELLTVF 123 ++ VL GGV ++ + ++GLP + + A+F+ E S T+ VF Sbjct: 106 LKKVLDGGVVQDTPNGIATVLLGLPLKTEMGTKAIFL-----EALAPPSASFVTKWALVF 160 Query: 124 -----LIGXXXXXXAARSIVKPLLRLRDAAGQMAQGHFDMQLRTNRKDEIGQLNTSFNEM 178 + G A+ +V+P+ +L A ++A G F+++L + E+G L SF EM Sbjct: 161 ATCSLIAGSLLILVASVFLVRPIKKLTKATKRIASGDFNVKLNIKQTSELGTLARSFEEM 220 Query: 179 AQELAKLDRMRREFVANVSHEIQSPLTSISGFAKALKQKRMSEESRMHYLTXXXXXXXXX 238 +L +L++MRREFV NVSHE+QSPLTSISG+A LKQ +SE R YL Sbjct: 221 MHDLQQLEQMRREFVTNVSHEVQSPLTSISGYALVLKQVDLSEYERSRYLDIIIAEAKRM 280 Query: 239 XXXXQNLLRLSSLQHDRHPAQPAAFRLDEQLRKVVIALEPQWSGKEIAVELDLEPVTVHA 298 NLL+LS L+ + LDEQ+R++++AL+PQWS ++I ELDL+ V V A Sbjct: 281 SKMSDNLLKLSFLESQSKQLRLVTLSLDEQIRRIIVALQPQWSARDIHFELDLQTVKVTA 340 Query: 299 DEDQLSQVWTNLLGNSIKFTPVHGRICIRVYAGGRSAVVRITDNGIGIPEDQRTDIFKPF 358 D D L+QVWTN+L NSIKF+ G I + + ++ + I+D GIGI D + IF F Sbjct: 341 DHDLLNQVWTNILRNSIKFSEDAGVINVSIKQDIKNVTILISDTGIGIHLDDQKRIFDRF 400 Query: 359 HKVDKARDRAVSGNGLGLSIVKLIVELHEGEIRADEEPGGGSVFTVKLPL 408 K D++ R G+G+GL+IVK IV LH+G+IR EPG G+ F V LP+ Sbjct: 401 FKADRSHSRKYDGSGMGLAIVKQIVSLHQGDIRVKSEPGQGTTFIVTLPI 450 >C2PYI1.1 C2PYI1_BACCE Putative uncharacterized protein Length = 429 Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 150/410 (36%), Positives = 231/410 (56%), Gaps = 17/410 (4%) Query: 9 GKQIIQTYRSSAGTELIPFMNNVSSISIYAVQLFDASGN-----PLLEDRSEPVVPGSER 63 G+ I++ Y++ E F++ + + Y +++++A+G L + PV E+ Sbjct: 22 GQDIVRIYKTFPLHEADLFVSEMKQLDSYYIRIYEATGQFKSYGKLHGHKPAPVT--MEQ 79 Query: 64 IRHVLSGGVTRNIEHEGRYPMVGLPFPVDGQSYALFVMLKGNELWLQSSKEVNTELLTVF 123 ++ VL GGV ++ + ++GLP + + A+F+ E S T+ VF Sbjct: 80 LKKVLDGGVVQDTPNGIATVLLGLPLKTEMGTKAIFL-----EALAPPSASFVTKWALVF 134 Query: 124 -----LIGXXXXXXAARSIVKPLLRLRDAAGQMAQGHFDMQLRTNRKDEIGQLNTSFNEM 178 + G A+ +V+P+ +L A ++A G F+++L + E+G L SF EM Sbjct: 135 ATCSLITGSLLILVASVFLVRPIKKLTKATKRIASGDFNVKLNIKQTSELGTLARSFEEM 194 Query: 179 AQELAKLDRMRREFVANVSHEIQSPLTSISGFAKALKQKRMSEESRMHYLTXXXXXXXXX 238 +L +L+RMRREFV NVSHE+QSPLTSISG+A LKQ +SE R YL Sbjct: 195 MHDLQQLERMRREFVTNVSHEVQSPLTSISGYALVLKQVDLSEYERSRYLDIIIAEAKRM 254 Query: 239 XXXXQNLLRLSSLQHDRHPAQPAAFRLDEQLRKVVIALEPQWSGKEIAVELDLEPVTVHA 298 NLL+LS L+ + LDEQ+R++++AL+PQWS ++I ELDL+ V + A Sbjct: 255 SKMSDNLLKLSFLESQSKQLRLVTLSLDEQIRRIIVALQPQWSARDIHFELDLQTVKITA 314 Query: 299 DEDQLSQVWTNLLGNSIKFTPVHGRICIRVYAGGRSAVVRITDNGIGIPEDQRTDIFKPF 358 D D L+QVWTN+L NSIKF+ G I + + ++ + I+D GIGI D + IF+ F Sbjct: 315 DHDLLNQVWTNILRNSIKFSEDTGVINVSIKQDIKNVTILISDTGIGIHLDDQKRIFERF 374 Query: 359 HKVDKARDRAVSGNGLGLSIVKLIVELHEGEIRADEEPGGGSVFTVKLPL 408 K D++ R G+G+GL+IVK IV LH+G+IR E G G+ F V LP+ Sbjct: 375 FKADRSHSRKYDGSGMGLAIVKQIVSLHQGDIRVKSELGQGTTFIVTLPI 424 >B3K8P6.1 B3K8P6_9BACI Sensor protein EC=2.7.13.3 Length = 459 Score = 262 bits (669), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 154/422 (36%), Positives = 235/422 (55%), Gaps = 34/422 (8%) Query: 9 GKQIIQTYRSSAGTELIPFMNNVSSISIYAVQLFDASGNPLLED---RSEPVVPGSERIR 65 K I Y S T++ +++++ + Y L + G R + + P E +R Sbjct: 47 AKDIGDFYDSHPETDIHDYLHHIGQLG-YQFYLVNDQGKEWFYGGMFREQDLSP--ETVR 103 Query: 66 HVLSGGVTRNIEHEGRYPM---------------VGLPFPVDGQSYALF----VMLKGNE 106 VL+G V I +P +G+P V+G +ALF + ++ E Sbjct: 104 QVLNGKVYHGI---AEFPSELFITGFFDNVLSNSIGIPIQVEGSPHALFLRPDITVQFGE 160 Query: 107 LWLQSSK-EVNTELLTVFLIGXXXXXXAARSIVKPLLRLRDAAGQMAQGHFDMQLRTNRK 165 + + S V LL++ L+G R IVKP+++L +A +AQG +D++L R+ Sbjct: 161 MRIFFSIIMVIAILLSILLVGI-----ITRYIVKPIVKLTEATQSVAQGQYDIKLNVTRR 215 Query: 166 DEIGQLNTSFNEMAQELAKLDRMRREFVANVSHEIQSPLTSISGFAKALKQKRMSEESRM 225 DE+GQL F++MA+ LA+L++MR+EFV+NVSHEIQSPL SI GF++ L+ KR+SEE + Sbjct: 216 DELGQLADHFSQMAKGLAQLEQMRQEFVSNVSHEIQSPLASIQGFSQTLQTKRLSEEQQQ 275 Query: 226 HYLTXXXXXXXXXXXXXQNLLRLSSLQHDRHPAQPAAFRLDEQLRKVVIALEPQWSGKEI 285 HYL+ + LL L+SL + + + F + EQ+++V+ E W K++ Sbjct: 276 HYLSIIEAESRRMSQLSKQLLMLASLDKEENILDKSTFDVAEQIKQVLFHTEWNWRSKDL 335 Query: 286 AVELDLEPVTVHADEDQLSQVWTNLLGNSIKFTPVHGRICIRVYAGGRSAVVRITDNGIG 345 +++ L P V+ D+ L QVWTNL+ NSIKFT G I +RV + I+D GIG Sbjct: 336 TIDMSLPPTYVYGDQQLLHQVWTNLITNSIKFTAPEGAISLRVIEHNTQCRIEISDTGIG 395 Query: 346 IPEDQRTDIFKPFHKVDKARDRAVSGNGLGLSIVKLIVELHEGEIRADEEPGGGSVFTVK 405 IP++ IF F++VD+ARDR+ +GLGLSI + IVELH G I +PG G+ FTV Sbjct: 396 IPQEHLPHIFNRFYRVDEARDRSEGSSGLGLSITQKIVELHGGRIEVTSQPGKGTTFTVI 455 Query: 406 LP 407 LP Sbjct: 456 LP 457 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,253,718,849 Number of extensions: 91011530 Number of successful extensions: 320467 Number of sequences better than 1.0e-05: 29030 Number of HSP's gapped: 280216 Number of HSP's successfully gapped: 29222 Length of query: 411 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 273 Effective length of database: 1,760,596,133 Effective search space: 480642744309 Effective search space used: 480642744309 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)