BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0450.0023.p
         (105 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KIN3.1 B3KIN3_9BACI HesB/YadR/YfhF-family protein                   120   4e-26
Q4MU20.1 Q4MU20_BACCE YneR-like protein                                87   5e-16
B7GKT5.1 B7GKT5_ANOFW Uncharacterized protein conserved in bacteria    87   7e-16
Q9KAN5.1 Q9KAN5_BACHD BH2252 protein                                   86   1e-15
Q65J18.1 Q65J18_BACLD YneR                                             85   2e-15

>B3KIN3.1 B3KIN3_9BACI HesB/YadR/YfhF-family protein
          Length = 101

 Score =  120 bits (301), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 53/100 (53%), Positives = 70/100 (70%)

Query: 1   MEMLISNEAAAWFKRELALPEGAYIRLFPRYSSGGGLHPGFSLGIANEPPGRQAVQTEQA 60
           M++ +S++AA W+K+EL L  G ++R FPRYSSGGGLHPGFSLGI+ E P    +     
Sbjct: 1   MQIQVSDQAARWYKKELDLQAGTFVRFFPRYSSGGGLHPGFSLGISVEEPREAGLTERSE 60

Query: 61  GIVFYMEEQDLWYMEGYNLSIVYSEAEDDIEYVYVPEAAA 100
            + FYMEEQDLWY++GY L + Y E+ DDI Y+Y  E A 
Sbjct: 61  EVTFYMEEQDLWYLKGYTLRVKYEESLDDISYIYEEEGAV 100


>Q4MU20.1 Q4MU20_BACCE YneR-like protein
          Length = 96

 Score = 87.0 bits (214), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 58/96 (60%)

Query: 1  MEMLISNEAAAWFKRELALPEGAYIRLFPRYSSGGGLHPGFSLGIANEPPGRQAVQTEQA 60
          M++ I  +A  WFK+EL + +  YIR   RY     + PG+SLGI  E P  + V  E+ 
Sbjct: 1  MKISIEYDALQWFKKELCIKQDEYIRFIVRYGGNSSIQPGYSLGIVAEKPDGEIVSVEKE 60

Query: 61 GIVFYMEEQDLWYMEGYNLSIVYSEAEDDIEYVYVP 96
          GI+F+++  DLWY + Y+L + Y E  ++I++ YV 
Sbjct: 61 GIIFFVDVDDLWYFQNYDLFVSYHEEMEEIQFNYVK 96


>B7GKT5.1 B7GKT5_ANOFW Uncharacterized protein conserved in bacteria
          Length = 99

 Score = 86.7 bits (213), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 58/94 (61%)

Query: 1  MEMLISNEAAAWFKRELALPEGAYIRLFPRYSSGGGLHPGFSLGIANEPPGRQAVQTEQA 60
          M + I ++A  W+K EL L  G Y+R F RY     +  GFSLG++ E P   AV  E+ 
Sbjct: 5  MNISICDQAFQWYKEELQLQRGDYVRFFARYGGCSNVQKGFSLGVSKEEPIDAAVTLEKN 64

Query: 61 GIVFYMEEQDLWYMEGYNLSIVYSEAEDDIEYVY 94
          G++F++E+ D+WY +G++L I + E +++  + Y
Sbjct: 65 GVIFFVEQNDMWYFDGHDLHIEFDEKQNEPVFTY 98


>Q9KAN5.1 Q9KAN5_BACHD BH2252 protein
          Length = 95

 Score = 85.5 bits (210), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 54/94 (57%)

Query: 1  MEMLISNEAAAWFKRELALPEGAYIRLFPRYSSGGGLHPGFSLGIANEPPGRQAVQTEQA 60
          M + I+  A  WFK E  L  G  IR + RY   G +  GFSLGI+ E P     ++E  
Sbjct: 1  MNIQITKPALQWFKDEFGLEGGENIRFYARYGGCGSIQSGFSLGISQETPKEIGAKSEVD 60

Query: 61 GIVFYMEEQDLWYMEGYNLSIVYSEAEDDIEYVY 94
          G+ FY+E +DLWY +  +L + YS   D+IE+VY
Sbjct: 61 GVTFYIENEDLWYFKDLDLKVKYSRKYDEIEFVY 94


>Q65J18.1 Q65J18_BACLD YneR
          Length = 95

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 54/86 (62%)

Query: 1  MEMLISNEAAAWFKRELALPEGAYIRLFPRYSSGGGLHPGFSLGIANEPPGRQAVQTEQA 60
          M + I+ EA  W+K EL L EG  +R F RY     +  GFSLG++ + P +  V  E+ 
Sbjct: 1  MNLKINEEALKWYKNELDLKEGDQVRFFVRYGGCSNVQKGFSLGVSKDEPQQIGVSAEKD 60

Query: 61 GIVFYMEEQDLWYMEGYNLSIVYSEA 86
          GI F++EE D+WY +G++L + Y+E+
Sbjct: 61 GITFFVEESDVWYFDGHDLLVTYNES 86


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 675,630,346
Number of extensions: 26431902
Number of successful extensions: 51868
Number of sequences better than 1.0e-05: 194
Number of HSP's gapped: 51875
Number of HSP's successfully gapped: 194
Length of query: 105
Length of database: 3,060,696,203
Length adjustment: 73
Effective length of query: 32
Effective length of database: 2,372,962,108
Effective search space: 75934787456
Effective search space used: 75934787456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)