BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0450.0021.p (313 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIN6.1 B3KIN6_9BACI ABC transporter related 481 e-134 C0Z655.1 C0Z655_BREBN ABC transporter ATP-binding/permease protein 363 1e-98 A8FB85.1 A8FB85_BACP2 ABC superfamily ATP binding cassette trans... 358 4e-97 Q65M89.1 Q65M89_BACLD YgaD 355 4e-96 B4ANX1.1 B4ANX1_BACPU Lipid A export ATP-binding/permease protei... 352 3e-95 >B3KIN6.1 B3KIN6_9BACI ABC transporter related Length = 581 Score = 481 bits (1239), Expect = e-134, Method: Compositional matrix adjust. Identities = 229/291 (78%), Positives = 262/291 (90%) Query: 1 MKWIVLTLFIGMIKFSIPLTLPLILKYVVDVLLNNPVLSVTERVSKLMMVLGGSLVLFVI 60 MKWI+LTL IGMIKF+IPL LP+I+KYVVD LL N +S+ +++ LM +LGG+LVLFVI Sbjct: 15 MKWIILTLIIGMIKFAIPLLLPMIMKYVVDDLLINQQMSIEQKIQDLMWILGGTLVLFVI 74 Query: 61 IRGPVEYYRQYFAQLITSRVLFDMRNRLYGHLQRLSLRYYQNTKVGEAISRFINDVEQSK 120 +RGPVEY RQYFAQ ITSR+LFDMRNRLY HLQRLSLRYYQNTKVGEAISRFINDVEQSK Sbjct: 75 VRGPVEYLRQYFAQFITSRILFDMRNRLYAHLQRLSLRYYQNTKVGEAISRFINDVEQSK 134 Query: 121 NLVEVGMMNVWLDMFTLVFALAFMFYLNPVLALVSIAILPLYGIAVNTLYKRLKLLTKDR 180 NLVEVGMMN+WLDMFTL+F L M ++NPVL LV+I+ILPLYG+AVN LYKRLK LTKDR Sbjct: 135 NLVEVGMMNIWLDMFTLLFVLVVMLFMNPVLTLVAISILPLYGLAVNLLYKRLKRLTKDR 194 Query: 181 SQALAAIQGYLHERIQGIAIIRSFTMERVDKKQFKDINGKFLEKAMAQTRWNAFTFAIIN 240 SQALA IQ YLHERIQGI++IRSFT+E D+K+F+ ING FL KAMAQTRWNA TF++IN Sbjct: 195 SQALAGIQAYLHERIQGISVIRSFTLECYDQKKFEGINGNFLNKAMAQTRWNALTFSVIN 254 Query: 241 TLTDIAPLLVIGYGGYQVIHGNLSLGTFVAFFGYLDRMYAPLRRLINSSTV 291 TLTDIAP+LVIGYGGY+VI G+L+LGTFVAFFGYLDR+YAPLRRLINSSTV Sbjct: 255 TLTDIAPILVIGYGGYRVIQGDLTLGTFVAFFGYLDRLYAPLRRLINSSTV 305 >C0Z655.1 C0Z655_BREBN ABC transporter ATP-binding/permease protein Length = 593 Score = 363 bits (932), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 167/290 (57%), Positives = 229/290 (78%), Gaps = 1/290 (0%) Query: 2 KWIVLTLFIGMIKFSIPLTLPLILKYVVDVLLNNPVLSVTERVSKLMMVLGGSLVLFVII 61 K I+ T+FIG+IKF+IPL LPL++KYV+D LL +P L E++ +L ++ G+ +LF ++ Sbjct: 15 KQILGTIFIGIIKFAIPLALPLLIKYVIDDLLPSP-LPQEEKLKQLFWLMLGAFLLFTVV 73 Query: 62 RGPVEYYRQYFAQLITSRVLFDMRNRLYGHLQRLSLRYYQNTKVGEAISRFINDVEQSKN 121 R PVEY RQY+AQ ++SR+LFD+RN+L+ HLQRLS+RYY NTK GE ISR INDVE +K+ Sbjct: 74 RAPVEYIRQYYAQWVSSRILFDIRNQLFSHLQRLSMRYYNNTKTGEVISRVINDVESTKS 133 Query: 122 LVEVGMMNVWLDMFTLVFALAFMFYLNPVLALVSIAILPLYGIAVNTLYKRLKLLTKDRS 181 VE G+MN+WLD+ T+ + M Y++ L +V+I + PLY I+V YKRL+ LTKDRS Sbjct: 134 FVESGLMNLWLDLITITLTMGIMLYMDVELTIVAIIVFPLYSISVKFFYKRLRQLTKDRS 193 Query: 182 QALAAIQGYLHERIQGIAIIRSFTMERVDKKQFKDINGKFLEKAMAQTRWNAFTFAIINT 241 ALA +QGYL+ER+ G+++IRSF +E+ + K+F N +FL+KA+A TRWNA TFA++NT Sbjct: 194 AALAHLQGYLYERVNGMSLIRSFALEKQESKEFAKENNQFLDKALAHTRWNARTFAVVNT 253 Query: 242 LTDIAPLLVIGYGGYQVIHGNLSLGTFVAFFGYLDRMYAPLRRLINSSTV 291 +TDIAPLLVI Y GYQVI G++S+GT VAF+ YL+R+Y PLRRL+NSSTV Sbjct: 254 VTDIAPLLVIAYAGYQVIGGSMSVGTLVAFYAYLERLYTPLRRLVNSSTV 303 >A8FB85.1 A8FB85_BACP2 ABC superfamily ATP binding cassette transporter, ABC/membrane protein Length = 580 Score = 358 bits (918), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 168/290 (57%), Positives = 221/290 (76%), Gaps = 1/290 (0%) Query: 2 KWIVLTLFIGMIKFSIPLTLPLILKYVVDVLLNNPVLSVTERVSKLMMVLGGSLVLFVII 61 K I LT+ IGMIKFSIPLTLPL+LKYV+D ++ S E+ S L+M++G LVLF+++ Sbjct: 16 KQIALTMVIGMIKFSIPLTLPLLLKYVIDDVIQGSG-SADEKTSSLLMIMGIMLVLFLVM 74 Query: 62 RGPVEYYRQYFAQLITSRVLFDMRNRLYGHLQRLSLRYYQNTKVGEAISRFINDVEQSKN 121 R PVEYYRQY+AQ S+VLFD+R +L+ H+Q+LSLRYY NT+ GE ISR INDVEQ+K Sbjct: 75 RPPVEYYRQYYAQWTGSKVLFDIREKLFSHIQKLSLRYYANTRTGEIISRVINDVEQTKE 134 Query: 122 LVEVGMMNVWLDMFTLVFALAFMFYLNPVLALVSIAILPLYGIAVNTLYKRLKLLTKDRS 181 V G+MN+WLD+ T++ +A M L+ L +VS+ I PLY AV Y RL+ LTK+RS Sbjct: 135 FVITGLMNIWLDLMTVLIVIAIMCTLDIKLTIVSVIIFPLYAFAVKFFYGRLRKLTKERS 194 Query: 182 QALAAIQGYLHERIQGIAIIRSFTMERVDKKQFKDINGKFLEKAMAQTRWNAFTFAIINT 241 QALA +QG+LHER+QG+ +IRSF +E +++ F D N FL KA+ T WNA TFA++NT Sbjct: 195 QALAEVQGHLHERVQGMPVIRSFAIEEYEQENFHDENKNFLNKAINHTNWNAKTFAVVNT 254 Query: 242 LTDIAPLLVIGYGGYQVIHGNLSLGTFVAFFGYLDRMYAPLRRLINSSTV 291 +TDIAPLL+I + GY VI+G+LS+GT +AF GY+DRMY P+RRLINSST Sbjct: 255 ITDIAPLLIIAFAGYTVINGSLSIGTMIAFVGYIDRMYNPIRRLINSSTT 304 >Q65M89.1 Q65M89_BACLD YgaD Length = 580 Score = 355 bits (910), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 166/290 (57%), Positives = 223/290 (76%), Gaps = 2/290 (0%) Query: 2 KW-IVLTLFIGMIKFSIPLTLPLILKYVVDVLLNNPVLSVTERVSKLMMVLGGSLVLFVI 60 KW IVLT+ IG+IKFSIPL +PL+LKYVVD ++ + E+ S L MV+ +F++ Sbjct: 15 KWKIVLTVLIGIIKFSIPLVIPLLLKYVVDDIIQGSG-TAEEKTSTLFMVMAVMFAIFLV 73 Query: 61 IRGPVEYYRQYFAQLITSRVLFDMRNRLYGHLQRLSLRYYQNTKVGEAISRFINDVEQSK 120 +R PVEYYRQYFAQ S+VL+D+R++L+ H+Q+LSLRYY NT+ GE ISR INDVEQ+K Sbjct: 74 LRPPVEYYRQYFAQWTASKVLYDIRDKLFAHIQKLSLRYYANTRAGEIISRVINDVEQTK 133 Query: 121 NLVEVGMMNVWLDMFTLVFALAFMFYLNPVLALVSIAILPLYGIAVNTLYKRLKLLTKDR 180 V +G+MNVWLD+ T+ A+A M ++ L L+SI + PLYG++V Y RL+ LT++R Sbjct: 134 EFVIIGLMNVWLDVMTIFIAIAIMMTMDVKLTLISIVLFPLYGLSVKFFYGRLRKLTRER 193 Query: 181 SQALAAIQGYLHERIQGIAIIRSFTMERVDKKQFKDINGKFLEKAMAQTRWNAFTFAIIN 240 SQALA +QG+LHER+QG+ +IRSF +E ++KQF NG FL KA+ T WNA TFA++N Sbjct: 194 SQALAEVQGHLHERVQGMPVIRSFAIEDYEQKQFDHENGNFLGKAIRHTAWNAKTFAVVN 253 Query: 241 TLTDIAPLLVIGYGGYQVIHGNLSLGTFVAFFGYLDRMYAPLRRLINSST 290 T+TD+APL++I GY VIHGNL++GT VAFFGY++R+Y PLRRLINSST Sbjct: 254 TVTDLAPLIIITVAGYHVIHGNLTVGTMVAFFGYIERLYNPLRRLINSST 303 >B4ANX1.1 B4ANX1_BACPU Lipid A export ATP-binding/permease protein MsbA EC=3.6.3.- Length = 580 Score = 352 bits (903), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 166/290 (57%), Positives = 220/290 (75%), Gaps = 1/290 (0%) Query: 2 KWIVLTLFIGMIKFSIPLTLPLILKYVVDVLLNNPVLSVTERVSKLMMVLGGSLVLFVII 61 K I LT+ IGMIKFSIPLTLPL+LKYV+D ++ S E+ S L++++G LVLF+++ Sbjct: 16 KQIALTMVIGMIKFSIPLTLPLLLKYVIDDVIQGSG-SAEEKTSSLLIMMGIMLVLFLVM 74 Query: 62 RGPVEYYRQYFAQLITSRVLFDMRNRLYGHLQRLSLRYYQNTKVGEAISRFINDVEQSKN 121 R PVEYYRQY+AQ S+VLFD+R +L+ H+Q+LSLRYY NT+ GE ISR INDVEQ+K Sbjct: 75 RPPVEYYRQYYAQWTGSKVLFDIREKLFSHIQKLSLRYYANTRTGEIISRVINDVEQTKE 134 Query: 122 LVEVGMMNVWLDMFTLVFALAFMFYLNPVLALVSIAILPLYGIAVNTLYKRLKLLTKDRS 181 V G+MN+WLD+ T++ +A M L+ L +VS+ I PLY AV Y RL+ LTK+RS Sbjct: 135 FVITGLMNIWLDLMTVLIVIAIMCTLDIKLTIVSVIIFPLYAFAVKYFYGRLRKLTKERS 194 Query: 182 QALAAIQGYLHERIQGIAIIRSFTMERVDKKQFKDINGKFLEKAMAQTRWNAFTFAIINT 241 QALA +QG+LHER+QG+ +IRSF +E +++ F D N FL KA+ T WNA TFA++NT Sbjct: 195 QALAEVQGHLHERVQGMPVIRSFAIEEYEQENFHDENKNFLNKAINHTNWNAKTFAVVNT 254 Query: 242 LTDIAPLLVIGYGGYQVIHGNLSLGTFVAFFGYLDRMYAPLRRLINSSTV 291 +TDIAPLL+I + GY VI+G+LS+ T +AF GY+DRMY P+RRLINSST Sbjct: 255 ITDIAPLLIIAFAGYTVINGSLSIRTMIAFVGYIDRMYNPIRRLINSSTT 304 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.144 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,730,077,722 Number of extensions: 66234687 Number of successful extensions: 247101 Number of sequences better than 1.0e-05: 6732 Number of HSP's gapped: 243783 Number of HSP's successfully gapped: 6831 Length of query: 313 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 178 Effective length of database: 1,788,859,178 Effective search space: 318416933684 Effective search space used: 318416933684 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)