BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0450.0020.p (266 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIN6.1 B3KIN6_9BACI ABC transporter related 341 3e-92 C1PEC7.1 C1PEC7_BACCO ABC transporter related 293 8e-78 A8FB85.1 A8FB85_BACP2 ABC superfamily ATP binding cassette trans... 286 1e-75 B4ANX1.1 B4ANX1_BACPU Lipid A export ATP-binding/permease protei... 286 1e-75 B9E7Y6.1 B9E7Y6_MACCJ Putative uncharacterized protein 286 2e-75 >B3KIN6.1 B3KIN6_9BACI ABC transporter related Length = 581 Score = 341 bits (875), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 173/265 (65%), Positives = 199/265 (75%), Gaps = 1/265 (0%) Query: 2 ELLNEPYDIIDEXXXXXXXXXXXXIEFQKVWFKYNDENDWVLKNIELSISPGQTVAFVXX 61 EL++EPYDI+D IEF +V FKYND WVL++I L+I GQT+AFV Sbjct: 318 ELMDEPYDIVDRPNAKTLKTAGQ-IEFDRVSFKYNDAAGWVLQDINLTIRQGQTIAFVGM 376 Query: 62 XXXXXXXXXXXXPRFYDITEGSLRMDGHDVRTLTQESLRRAVGMVLQDNFLFSGSVRDNI 121 PRFYD+ +G+++++GHDVR LT +SLR +VGMVLQDNFLFSG+VR+NI Sbjct: 377 SGGGKSSLIGLIPRFYDVQQGAVKINGHDVRDLTLDSLRGSVGMVLQDNFLFSGTVRENI 436 Query: 122 LFGXXXXXXXXXXXXXXXXXXHDFIMQLPDGYDTEVGERGVKLSGGQKQRVAIARVFLKD 181 LFG HDFI QLP GYDTEVGERGVKLSGGQKQR+AIARVFLKD Sbjct: 437 LFGNPEADEAAIVAAAQAANAHDFITQLPQGYDTEVGERGVKLSGGQKQRLAIARVFLKD 496 Query: 182 PKVLILDEATSALDLESEHLIQQALQSLASERTTLIVAHRLSTITHADQIVVLEHGEITE 241 P +L+LDEATSALDLESEHLIQQALQSLAS RTTLIVAHRLSTITHADQIVVLE+G ITE Sbjct: 497 PDILVLDEATSALDLESEHLIQQALQSLASNRTTLIVAHRLSTITHADQIVVLENGRITE 556 Query: 242 RGTHEELMALDGSYARLFNVQRLDA 266 +GTH ELM LDGSYARL+NVQ L+ Sbjct: 557 QGTHGELMTLDGSYARLYNVQHLET 581 >C1PEC7.1 C1PEC7_BACCO ABC transporter related Length = 582 Score = 293 bits (751), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 152/265 (57%), Positives = 180/265 (67%) Query: 1 MELLNEPYDIIDEXXXXXXXXXXXXIEFQKVWFKYNDENDWVLKNIELSISPGQTVAFVX 60 ELL+E YDI D I F V F+Y+DE + VLKNI L I G+TVAFV Sbjct: 317 FELLDEKYDIDDRPDAVECRNVRGNIRFDGVEFRYDDEKEPVLKNINLEIRAGETVAFVG 376 Query: 61 XXXXXXXXXXXXXPRFYDITEGSLRMDGHDVRTLTQESLRRAVGMVLQDNFLFSGSVRDN 120 PRFYD+T+G++ +DG D+RT SLR +GMVLQDN LFS SV+ N Sbjct: 377 MSGGGKSSLVSLIPRFYDVTKGAVYLDGQDIRTFKVRSLRDKIGMVLQDNILFSESVKSN 436 Query: 121 ILFGXXXXXXXXXXXXXXXXXXHDFIMQLPDGYDTEVGERGVKLSGGQKQRVAIARVFLK 180 IL G H+FIM L DGY+T VGERGVKLSGGQKQR+AIARVFLK Sbjct: 437 ILLGNPQATDEEVVQAAKAANAHEFIMNLADGYETTVGERGVKLSGGQKQRIAIARVFLK 496 Query: 181 DPKVLILDEATSALDLESEHLIQQALQSLASERTTLIVAHRLSTITHADQIVVLEHGEIT 240 +P +LILDEATSALDLESEHLIQ+A++ LA RTTLIVAHRLSTITHAD+IV++E+GEI Sbjct: 497 NPPILILDEATSALDLESEHLIQEAIEKLARNRTTLIVAHRLSTITHADRIVLIENGEIK 556 Query: 241 ERGTHEELMALDGSYARLFNVQRLD 265 E GTHE+LMA G Y LF +Q+LD Sbjct: 557 ETGTHEQLMAKQGLYYNLFQIQQLD 581 >A8FB85.1 A8FB85_BACP2 ABC superfamily ATP binding cassette transporter, ABC/membrane protein Length = 580 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 142/264 (53%), Positives = 174/264 (65%) Query: 2 ELLNEPYDIIDEXXXXXXXXXXXXIEFQKVWFKYNDENDWVLKNIELSISPGQTVAFVXX 61 E ++EPY++ D +EF+ V F+Y + +L+NI L + GQTVA V Sbjct: 317 EFIDEPYEVTDRPNAKEADHLKGEVEFKHVSFRYEHTQEEILRNISLKVEKGQTVALVGM 376 Query: 62 XXXXXXXXXXXXPRFYDITEGSLRMDGHDVRTLTQESLRRAVGMVLQDNFLFSGSVRDNI 121 PRFYD+T GSL +DG D++ SLR VGMVLQD FLFS ++++NI Sbjct: 377 SGGGKSTLVSLIPRFYDVTNGSLEIDGIDIKEYKARSLRNQVGMVLQDTFLFSDTIKENI 436 Query: 122 LFGXXXXXXXXXXXXXXXXXXHDFIMQLPDGYDTEVGERGVKLSGGQKQRVAIARVFLKD 181 G HDFIM LP+GYDT+VGERGVKLSGGQKQR++IARVFLK+ Sbjct: 437 AVGDPEASFEKIVSAAKAANAHDFIMSLPEGYDTKVGERGVKLSGGQKQRISIARVFLKN 496 Query: 182 PKVLILDEATSALDLESEHLIQQALQSLASERTTLIVAHRLSTITHADQIVVLEHGEITE 241 P +LILDEATSALDLESEH IQ+A+Q LA +RTT IVAHRLSTITHAD IVV+E GEI E Sbjct: 497 PPLLILDEATSALDLESEHYIQEAMQKLAKDRTTFIVAHRLSTITHADLIVVMEQGEIVE 556 Query: 242 RGTHEELMALDGSYARLFNVQRLD 265 +GTHEELM D Y LF +Q L+ Sbjct: 557 KGTHEELMNRDSHYRHLFTIQTLN 580 >B4ANX1.1 B4ANX1_BACPU Lipid A export ATP-binding/permease protein MsbA EC=3.6.3.- Length = 580 Score = 286 bits (732), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 142/264 (53%), Positives = 174/264 (65%) Query: 2 ELLNEPYDIIDEXXXXXXXXXXXXIEFQKVWFKYNDENDWVLKNIELSISPGQTVAFVXX 61 E ++EPY++ D +EF+ V F+Y + +L+NI L + GQTVA V Sbjct: 317 EFIDEPYEVTDRPNAKEADHLKGEVEFKNVSFRYEHTQEEILRNISLKVEKGQTVALVGM 376 Query: 62 XXXXXXXXXXXXPRFYDITEGSLRMDGHDVRTLTQESLRRAVGMVLQDNFLFSGSVRDNI 121 PRFYD+T GSL +DG D++ SLR VGMVLQD FLFS ++++NI Sbjct: 377 SGGGKSTLVSLIPRFYDVTNGSLEIDGIDIKEYRARSLRNQVGMVLQDTFLFSDTIKENI 436 Query: 122 LFGXXXXXXXXXXXXXXXXXXHDFIMQLPDGYDTEVGERGVKLSGGQKQRVAIARVFLKD 181 G HDFIM LP+GYDT+VGERGVKLSGGQKQR++IARVFLK+ Sbjct: 437 AVGDPEASFEKIVSAAKAANAHDFIMSLPEGYDTKVGERGVKLSGGQKQRISIARVFLKN 496 Query: 182 PKVLILDEATSALDLESEHLIQQALQSLASERTTLIVAHRLSTITHADQIVVLEHGEITE 241 P +LILDEATSALDLESEH IQ+A+Q LA +RTT IVAHRLSTITHAD IVV+E GEI E Sbjct: 497 PPLLILDEATSALDLESEHYIQEAMQKLAKDRTTFIVAHRLSTITHADLIVVMEQGEIVE 556 Query: 242 RGTHEELMALDGSYARLFNVQRLD 265 +GTHEELM D Y LF +Q L+ Sbjct: 557 KGTHEELMNRDSHYRHLFTIQTLN 580 >B9E7Y6.1 B9E7Y6_MACCJ Putative uncharacterized protein Length = 582 Score = 286 bits (731), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 146/265 (55%), Positives = 179/265 (67%) Query: 2 ELLNEPYDIIDEXXXXXXXXXXXXIEFQKVWFKYNDENDWVLKNIELSISPGQTVAFVXX 61 +L +EPYDI D I F V FKYN+++ VL NI L I G+TVAFV Sbjct: 316 QLFDEPYDIKDTKNARDIQIHRGDISFNNVGFKYNEDDTEVLHNINLDIKSGETVAFVGM 375 Query: 62 XXXXXXXXXXXXPRFYDITEGSLRMDGHDVRTLTQESLRRAVGMVLQDNFLFSGSVRDNI 121 PRFYD+T+G + +D H ++ T ESLR +GMV+QDN LFS S+R+NI Sbjct: 376 SGGGKSTMISLIPRFYDVTQGEITVDHHPIKDYTLESLRTQIGMVMQDNILFSESIRNNI 435 Query: 122 LFGXXXXXXXXXXXXXXXXXXHDFIMQLPDGYDTEVGERGVKLSGGQKQRVAIARVFLKD 181 L G HDFIM LPDGYDTEVGERGVKLSGGQKQRVAI+RVFLK+ Sbjct: 436 LLGKPGATEAEMIQAAKLANAHDFIMSLPDGYDTEVGERGVKLSGGQKQRVAISRVFLKN 495 Query: 182 PKVLILDEATSALDLESEHLIQQALQSLASERTTLIVAHRLSTITHADQIVVLEHGEITE 241 P +LILDEATSALDLESE +IQ+AL+SL+ +RTT+IVAHRLSTITHAD+IVV++ GEI E Sbjct: 496 PPILILDEATSALDLESEAVIQEALESLSQDRTTVIVAHRLSTITHADKIVVVQDGEIVE 555 Query: 242 RGTHEELMALDGSYARLFNVQRLDA 266 GTH ELM Y L+++Q L++ Sbjct: 556 MGTHHELMQKHEHYYNLYSIQNLES 580 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,199,601,089 Number of extensions: 36877313 Number of successful extensions: 273837 Number of sequences better than 1.0e-05: 50551 Number of HSP's gapped: 246694 Number of HSP's successfully gapped: 53821 Length of query: 266 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 133 Effective length of database: 1,807,701,208 Effective search space: 240424260664 Effective search space used: 240424260664 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)