BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0450.0019.p
         (142 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DGQ7.1 B1DGQ7_9BACL Transcriptional regulator, MerR family          167   2e-40

>B1DGQ7.1 B1DGQ7_9BACL Transcriptional regulator, MerR family
          Length = 138

 Score =  167 bits (424), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/136 (57%), Positives = 110/136 (80%)

Query: 4   MEVYTGKQLADILQQEDADMNLRTVRYYTQIGMLPPLELVGNKRVYTGRHLEYLRAILTL 63
           M+ +T KQ+ +I+QQ+DA MNLRTVRYYTQIG+LPPLELVGNKRVYT +H++YLRAI+TL
Sbjct: 1   MDTFTAKQVTEIIQQDDAKMNLRTVRYYTQIGILPPLELVGNKRVYTNKHIQYLRAIITL 60

Query: 64  SKSGESLADIQVKLAALSPEEIAGLGARLKFYQPQHILQHETLVINDDVMLTVSPQITPE 123
           S++GE+LA IQ KL+ L+ EEI  +G ++  + P  IL+ ET  I +DV +T+SP+I+ E
Sbjct: 61  SRTGETLAAIQEKLSNLTIEEIEKIGDQINLFNPGRILESETHQITEDVAITLSPRISAE 120

Query: 124 QRSEMIEAVTRLLRGE 139
            + ++IE+V+ LLRG+
Sbjct: 121 IKQKVIESVSMLLRGD 136


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.135    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 759,616,263
Number of extensions: 27871533
Number of successful extensions: 76161
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 76252
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 3,060,696,203
Length adjustment: 105
Effective length of query: 37
Effective length of database: 2,071,489,628
Effective search space: 76645116236
Effective search space used: 76645116236
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)