BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0450.0018.p
         (182 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DGQ6.1 B1DGQ6_9BACL Putative uncharacterized protein                 57   8e-07

>B1DGQ6.1 B1DGQ6_9BACL Putative uncharacterized protein
          Length = 173

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 88/176 (50%), Gaps = 8/176 (4%)

Query: 8   VEFRFAKSYLEHEEGINHLWIKLEPLAGVKLAAVRLQ--LPKGIFWTEDAGVYPIDADSQ 65
           +E++ AKS +E+EEG+NHLWI+L      ++  +++   +P+GI    +   +  D    
Sbjct: 3   IEYKLAKSMMENEEGLNHLWIRLAEADQSEITDIQINVGMPEGISRLPNLNNHNEDEAGT 62

Query: 66  IRLESSNPPTELLLEMYTLQPVSPGLAELIFTVSCIAAGGVERSEAFAVPLRIADEEEAE 125
           I L  ++   +L++E+YT   +  G   +   +  +        ++ ++P+++   +E E
Sbjct: 63  IVLTKTD---DLMMEIYTTNTIVCGDQAITVDIVYMDWQKQRSMKSVSIPIKVVLADEME 119

Query: 126 PPFMDNEIVQKVKERRWKNNHPSDHGNKEPLDCTPGRLIRYDPHFRSELEKQYSIE 181
              +D E+V +V +   K    ++    E +   P RL   + +  S LE++Y ++
Sbjct: 120 TVEIDEEVVNRVTQLTIK-QISNELDEFEVIGIRPKRLSVNNKY--SILEQKYRVD 172


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,183,131,123
Number of extensions: 48823468
Number of successful extensions: 110951
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 110950
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 3,060,696,203
Length adjustment: 127
Effective length of query: 55
Effective length of database: 1,864,227,298
Effective search space: 102532501390
Effective search space used: 102532501390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)