BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0450.0015.p (197 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DE72.1 B1DE72_9BACL Transcriptional regulator, ArsR family 204 5e-51 B3KAQ0.1 B3KAQ0_9BACI Regulatory protein ArsR 185 1e-45 C0Z7V9.1 C0Z7V9_BREBN Probable transcriptional regulator 161 3e-38 A6CM38.1 A6CM38_9BACI Putative uncharacterized protein 156 8e-37 Q9KF20.1 Q9KF20_BACHD BH0677 protein 154 3e-36 >B1DE72.1 B1DE72_9BACL Transcriptional regulator, ArsR family Length = 201 Score = 204 bits (518), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 99/165 (60%), Positives = 124/165 (75%), Gaps = 7/165 (4%) Query: 37 KLNLSQPTVTHHAAKLREAALIKERRDKNTVYFALNPEFIQAGSEASLKFIF-----AKG 91 KL ++ TVTHHAAKLREA+LI ERR+KNT+YF+LN FI+ GS A+ I+ G Sbjct: 38 KLGVTPATVTHHAAKLREASLINERREKNTIYFSLNDYFIKNGSNAAANLIYRTSNQKGG 97 Query: 92 VEEMEEVSPDARLKESVLRNFFAKDGHLRQIPSQYKKKLIALQYMAEKLEPGVVYTEKEI 151 E+M E R+++SV++NFFA G L+ IP+Q KKKLI L+YM KLE G YTEKE+ Sbjct: 98 EEQMNE--EFERVRQSVIKNFFAATGQLKSIPAQLKKKLIVLEYMVSKLEKGRKYTEKEL 155 Query: 152 NEFIKPFHEDYATIRREFIMHQFMYRENDHYELNPPELWTHWENV 196 NEFIK FH+D+ATIRREFIMHQFM+REN+ YELNPPE+W WE + Sbjct: 156 NEFIKGFHQDFATIRREFIMHQFMFRENEIYELNPPEMWAKWETL 200 >B3KAQ0.1 B3KAQ0_9BACI Regulatory protein ArsR Length = 201 Score = 185 bits (470), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 86/165 (52%), Positives = 121/165 (73%), Gaps = 7/165 (4%) Query: 37 KLNLSQPTVTHHAAKLREAALIKERRDKNTVYFALNPEFIQAGSEASLKFIFAKG----- 91 K+ ++ T+THHAAKLREA+LI ERRDKNT++F+LN FI+ + A+ I+ + Sbjct: 38 KIGVTPATITHHAAKLREASLINERRDKNTIFFSLNDYFIKNSATATENLIYQRVRSESV 97 Query: 92 VEEMEEVSPDARLKESVLRNFFAKDGHLRQIPSQYKKKLIALQYMAEKLEPGVVYTEKEI 151 E ++E + R+++SV++NFF DG L+ IP+Q KKKLI L +M +LE G Y+EKE+ Sbjct: 98 TESLQE--EERRMRDSVIKNFFTSDGKLKSIPAQLKKKLIVLTHMVSRLEKGRKYSEKEM 155 Query: 152 NEFIKPFHEDYATIRREFIMHQFMYRENDHYELNPPELWTHWENV 196 NEFIK +HED+ATIRREFIMH FM+R+N YELNP ++W WE++ Sbjct: 156 NEFIKEYHEDFATIRREFIMHHFMFRDNGVYELNPEKMWARWEDL 200 >C0Z7V9.1 C0Z7V9_BREBN Probable transcriptional regulator Length = 209 Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 84/172 (48%), Positives = 112/172 (65%), Gaps = 11/172 (6%) Query: 37 KLNLSQPTVTHHAAKLREAALIKERRDKNTVYFALNPEFIQAGSEA-----------SLK 85 KL ++ PT+THH AKLREA ++ ERRDKNT+YF L+ ++ S+A S++ Sbjct: 38 KLGVTPPTITHHMAKLREAGVVYERRDKNTIYFYLHEANVKRQSQAIVNVMEKAKDTSVE 97 Query: 86 FIFAKGVEEMEEVSPDARLKESVLRNFFAKDGHLRQIPSQYKKKLIALQYMAEKLEPGVV 145 +FA+ ++ A K V+R+F DG L+QIPSQ KKKLI +YM LE G Sbjct: 98 ELFAEDTLHVQRRHQMAAEKMQVIRSFITPDGKLKQIPSQRKKKLIVFEYMVRGLEKGRK 157 Query: 146 YTEKEINEFIKPFHEDYATIRREFIMHQFMYRENDHYELNPPELWTHWENVK 197 Y E EINE+I+ FHEDYATIRREFIM+ +MYRE YELNP E+W E+++ Sbjct: 158 YKEPEINEYIRQFHEDYATIRREFIMNHYMYREEGIYELNPEEMWAKAEDLQ 209 >A6CM38.1 A6CM38_9BACI Putative uncharacterized protein Length = 194 Score = 156 bits (395), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 79/160 (49%), Positives = 105/160 (65%), Gaps = 5/160 (3%) Query: 37 KLNLSQPTVTHHAAKLREAALIKERRDKNTVYFALNPEFIQAGSEASLKFI--FAKGVEE 94 KL L+ PT++HH KL++ L+ RR+KN++Y+ LN + I+ L G E Sbjct: 38 KLGLTAPTISHHLTKLKDINLVYSRREKNSLYYHLNKKVIKHHGNVLLNMAEESKGGKGE 97 Query: 95 MEEVSPDARLKESVLRNFFAKDGHLRQIPSQYKKKLIALQYMAEKLEPGVVYTEKEINEF 154 ME++ + K+ VL NFF DG L IP+Q KKKL Q++ E L+PGV Y EKEINE+ Sbjct: 98 MEKIQKE---KQKVLNNFFTNDGKLINIPAQRKKKLFVFQHLIEGLKPGVKYEEKEINEY 154 Query: 155 IKPFHEDYATIRREFIMHQFMYRENDHYELNPPELWTHWE 194 IK +HEDYATIRREFI++ +MYREN YELNP E+W E Sbjct: 155 IKKYHEDYATIRREFIINHYMYRENGIYELNPKEMWATIE 194 >Q9KF20.1 Q9KF20_BACHD BH0677 protein Length = 189 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 75/154 (48%), Positives = 107/154 (69%), Gaps = 4/154 (2%) Query: 37 KLNLSQPTVTHHAAKLREAALIKERRDKNTVYFALNPEFIQAGSEASLKFIFAKGVEEME 96 KL L+ PT++HH +KLRE ++ +RR+KNT+YF L+ + ++ + A I G +EM Sbjct: 38 KLGLTPPTISHHLSKLREIDVVYQRREKNTIYFYLDEKKLERMAGA----ILMIGGDEMF 93 Query: 97 EVSPDARLKESVLRNFFAKDGHLRQIPSQYKKKLIALQYMAEKLEPGVVYTEKEINEFIK 156 D + K V++NF DG ++ +P+Q KKKLI L+YM +E G VY+EKEINE I+ Sbjct: 94 NFQVDDQEKVRVIKNFTLPDGRVKTLPAQRKKKLIILEYMLRGIEQGRVYSEKEINEHIR 153 Query: 157 PFHEDYATIRREFIMHQFMYRENDHYELNPPELW 190 FHED+AT+RREF+M QFM+R+N YELNP E+W Sbjct: 154 QFHEDFATVRREFVMCQFMFRKNGQYELNPKEMW 187 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,043,579,950 Number of extensions: 38605977 Number of successful extensions: 99907 Number of sequences better than 1.0e-05: 207 Number of HSP's gapped: 99897 Number of HSP's successfully gapped: 207 Length of query: 197 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 68 Effective length of database: 1,845,385,268 Effective search space: 125486198224 Effective search space used: 125486198224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)