BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0450.0011.p (362 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7U1.1 B3K7U1_9BACI GTPase EngC 385 e-105 B1DDY1.1 B1DDY1_9BACL Ribosome small subunit-dependent GTPase A 373 e-101 B8FYJ7.1 B8FYJ7_DESHD Ribosome small subunit-dependent GTPase A 361 8e-98 Q24WQ8.1 Q24WQ8_DESHY Putative uncharacterized protein 361 8e-98 C0ZJ17.1 C0ZJ17_BREBN Putative GTPase EC=3.6.1.- 358 7e-97 >B3K7U1.1 B3K7U1_9BACI GTPase EngC Length = 369 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 182/353 (51%), Positives = 248/353 (70%), Gaps = 5/353 (1%) Query: 2 TIEQYGWNKNWQSKWNERLTGNEGKGYVPGRIVGDFGSKYRVMAENGETWGELAGKLRHS 61 T++ YGWN++W+ + + K VP RI F +YR++ + GE + GK + Sbjct: 8 TLQAYGWNEHWRLMAAQ--IPKQDKALVPARITAQFSKQYRIITQEGEQTAIVTGKYEYE 65 Query: 62 LTDSGEYPAVGDWVVLALQDGGEHAVIHGVLPRHSVISRKVAGNTLEEQIVASNVDTLFL 121 ++PAVGDWV++ G AVIH +LPR S ++R+ AG+ +EQI+A+N+DT+F+ Sbjct: 66 AGSKSDFPAVGDWVMVEPLQGEARAVIHHLLPRQSAVTRREAGSVPDEQIIAANMDTVFI 125 Query: 122 VSALNDDFNVRRMERYLIMAWNSGANPVILLTKSDLCPDAEHKIAEMERVAPGVAIHAVS 181 ++ALN DFNVRR+ERYLI W SGA PV+LLTK+DLC E +AE+E VAPGV +HAVS Sbjct: 126 INALNKDFNVRRIERYLIAVWESGAAPVVLLTKADLCESPEAYVAEVEAVAPGVPVHAVS 185 Query: 182 ALLGDGREELLPYIGIGQTVALTGSSGCGKSTMVNWLSGQTIQLTQDVREDDSRGRHTTT 241 +L+ G+E+L Y+ G+TVA+TG+SG GKST++NWLSGQ +Q Q +RE+D+RGRHTTT Sbjct: 186 SLMDLGKEQLGEYLVQGKTVAITGTSGAGKSTLLNWLSGQEMQRVQGIREEDARGRHTTT 245 Query: 242 HRELFVLPDGGIIVDTPGMRELQLWEDEGGLDLAFGDITRLAAECRFGDCRHEHEEGCAV 301 HRELFVLP G I+VDTPGMRELQLW+ E G + F DI+ LA +CRF DCRHE E GCAV Sbjct: 246 HRELFVLPGGAIMVDTPGMRELQLWDSEEGFEATFADISALAQQCRFHDCRHETEAGCAV 305 Query: 302 LEAVASGELEEKRLLNYRKTQRELQYQSSKEVKQKRKTAAATKSAGSRTRNSN 354 EA+ G L+ KR NY+KT+REL + + KE R+ KS+G +R ++ Sbjct: 306 REALQDGTLDAKRYANYKKTERELAHIARKERVSTRRQ---NKSSGKSSRKND 355 >B1DDY1.1 B1DDY1_9BACL Ribosome small subunit-dependent GTPase A Length = 370 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 174/327 (53%), Positives = 233/327 (71%), Gaps = 2/327 (0%) Query: 6 YGWNKNWQSKWNERLTGNEGKGYVPGRIVGDFGSKYRVMAENGETWGELAGKLRHSLTDS 65 YGWN +W +K E++ + + VP R++ Y++M +GE + GK + Sbjct: 16 YGWNTDWNNKM-EQMPAS-ARQLVPARVIAQHSHSYQIMTPDGEHTATVTGKYEFNAALK 73 Query: 66 GEYPAVGDWVVLALQDGGEHAVIHGVLPRHSVISRKVAGNTLEEQIVASNVDTLFLVSAL 125 ++PAVGDWV+ G +VIH +LPR S + RK AG+T+++Q+V +N+D LF+ +AL Sbjct: 74 SDFPAVGDWVMAEKLPGETRSVIHILLPRQSAMIRKAAGSTVDDQVVGANMDYLFITNAL 133 Query: 126 NDDFNVRRMERYLIMAWNSGANPVILLTKSDLCPDAEHKIAEMERVAPGVAIHAVSALLG 185 N DFNVR+MERYLI AW SGA+PVILLTK+DLC D E A+ME APGV +H +SAL Sbjct: 134 NQDFNVRKMERYLIAAWESGASPVILLTKADLCDDPEFFAAQMESAAPGVPVHLISALQN 193 Query: 186 DGREELLPYIGIGQTVALTGSSGCGKSTMVNWLSGQTIQLTQDVREDDSRGRHTTTHREL 245 G+E+LLPY+ G+T+A+TGSSG GKST++NWL+ + I TQ +RE D+RGRHTTTHREL Sbjct: 194 QGKEQLLPYLQPGKTIAVTGSSGVGKSTLLNWLADENIMETQGIRETDARGRHTTTHREL 253 Query: 246 FVLPDGGIIVDTPGMRELQLWEDEGGLDLAFGDITRLAAECRFGDCRHEHEEGCAVLEAV 305 F+LP G +++DTPGMRELQLW+ GL+ AF DI LAA CR+ DCRHE + GCAVL+A+ Sbjct: 254 FLLPSGALVMDTPGMRELQLWDAHDGLEQAFSDIEALAAGCRYRDCRHESDPGCAVLQAI 313 Query: 306 ASGELEEKRLLNYRKTQRELQYQSSKE 332 G LE KRL NYRKT +EL + + KE Sbjct: 314 EDGTLEAKRLHNYRKTAKELSHLARKE 340 >B8FYJ7.1 B8FYJ7_DESHD Ribosome small subunit-dependent GTPase A Length = 365 Score = 361 bits (926), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 172/335 (51%), Positives = 234/335 (69%), Gaps = 10/335 (2%) Query: 3 IEQYGWNKNWQSKWNERLTGNEGKGYVPGRIVGDFGSKYRVMAENGETWGELAGKLRHSL 62 +++ GWN WQ + L G+ PGR+ ++ +++V E GE W ++GK+R++ Sbjct: 7 LKELGWNDAWQELFQPYLKS----GFHPGRVAAEYRDRFKVWTEFGEVWAVVSGKMRYTA 62 Query: 63 TDSGEYPAVGDWVVL-----ALQDGGEH-AVIHGVLPRHSVISRKVAGNTLEEQIVASNV 116 + ++PAVGDWVVL +++D + +I +LPR S SRK AG T EQIVA+N+ Sbjct: 63 LERSDFPAVGDWVVLEGRAESIKDHEDQDVIIQSILPRKSKFSRKAAGKTSAEQIVATNI 122 Query: 117 DTLFLVSALNDDFNVRRMERYLIMAWNSGANPVILLTKSDLCPDAEHKIAEMERVAPGVA 176 DT+FLV+ALN DFNVRR+ERYL +AW SGANPV++L+K+DLC D + K+++++ APGV Sbjct: 123 DTVFLVNALNFDFNVRRIERYLTLAWESGANPVLVLSKTDLCDDVQEKVSQVQDAAPGVD 182 Query: 177 IHAVSALLGDGREELLPYIGIGQTVALTGSSGCGKSTMVNWLSGQTIQLTQDVREDDSRG 236 I +S GDG + PYI GQT+AL GSSG GKST+VN+L GQ +QLT +VRE DSRG Sbjct: 183 ILPISCATGDGVSAIAPYIRQGQTIALLGSSGAGKSTLVNYLLGQNVQLTYEVREKDSRG 242 Query: 237 RHTTTHRELFVLPDGGIIVDTPGMRELQLWEDEGGLDLAFGDITRLAAECRFGDCRHEHE 296 RHTTT RELF+LP GG+++DTPGMRE+QL+ GL AF DI A CRF DC+HE E Sbjct: 243 RHTTTSRELFLLPQGGVLIDTPGMREIQLFGSGEGLSEAFEDIAAYAGNCRFSDCQHESE 302 Query: 297 EGCAVLEAVASGELEEKRLLNYRKTQRELQYQSSK 331 GCAV +A+A G L E+R +++K QRE +Y S K Sbjct: 303 PGCAVQKAIAEGMLSEERYESFKKLQREARYISRK 337 >Q24WQ8.1 Q24WQ8_DESHY Putative uncharacterized protein Length = 365 Score = 361 bits (926), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 172/335 (51%), Positives = 234/335 (69%), Gaps = 10/335 (2%) Query: 3 IEQYGWNKNWQSKWNERLTGNEGKGYVPGRIVGDFGSKYRVMAENGETWGELAGKLRHSL 62 +++ GWN WQ + L G+ PGR+ ++ +++V E GE W ++GK+R++ Sbjct: 7 LKELGWNDAWQEFFQPYLKS----GFHPGRVAAEYRDRFKVWTEFGEVWAVVSGKMRYTA 62 Query: 63 TDSGEYPAVGDWVVL-----ALQDGGEH-AVIHGVLPRHSVISRKVAGNTLEEQIVASNV 116 + ++PAVGDWVVL +++D + +I +LPR S SRK AG T EQIVA+N+ Sbjct: 63 LERSDFPAVGDWVVLEGRAESIKDHEDQDVIIQSILPRKSKFSRKAAGKTSAEQIVATNI 122 Query: 117 DTLFLVSALNDDFNVRRMERYLIMAWNSGANPVILLTKSDLCPDAEHKIAEMERVAPGVA 176 DT+FLV+ALN DFNVRR+ERYL +AW SGANPV++L+K+DLC D + K+++++ APGV Sbjct: 123 DTVFLVNALNFDFNVRRIERYLTLAWESGANPVLVLSKTDLCDDVQEKVSQVQDAAPGVD 182 Query: 177 IHAVSALLGDGREELLPYIGIGQTVALTGSSGCGKSTMVNWLSGQTIQLTQDVREDDSRG 236 I +S GDG + PYI GQT+AL GSSG GKST+VN+L GQ +QLT +VRE DSRG Sbjct: 183 ILPISCATGDGVSAIAPYIRQGQTIALLGSSGAGKSTLVNYLLGQNVQLTYEVREKDSRG 242 Query: 237 RHTTTHRELFVLPDGGIIVDTPGMRELQLWEDEGGLDLAFGDITRLAAECRFGDCRHEHE 296 RHTTT RELF+LP GG+++DTPGMRE+QL+ GL AF DI A CRF DC+HE E Sbjct: 243 RHTTTSRELFLLPQGGVLIDTPGMREIQLFGSGEGLSEAFEDIAAYAGNCRFSDCQHESE 302 Query: 297 EGCAVLEAVASGELEEKRLLNYRKTQRELQYQSSK 331 GCAV +A+A G L E+R +++K QRE +Y S K Sbjct: 303 PGCAVQKAIAEGMLSEERYESFKKLQREARYISRK 337 >C0ZJ17.1 C0ZJ17_BREBN Putative GTPase EC=3.6.1.- Length = 349 Score = 358 bits (918), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 175/321 (54%), Positives = 228/321 (71%) Query: 12 WQSKWNERLTGNEGKGYVPGRIVGDFGSKYRVMAENGETWGELAGKLRHSLTDSGEYPAV 71 W + T +G+ GRI + YR+ +E+GE GE+ GKLR+ T ++PAV Sbjct: 3 WNEYFANHFTPYAEQGFSVGRITLEHKRIYRLWSEHGELLGEVTGKLRYEATGREDFPAV 62 Query: 72 GDWVVLALQDGGEHAVIHGVLPRHSVISRKVAGNTLEEQIVASNVDTLFLVSALNDDFNV 131 GDWVV++ + + A IHG+LPR S SRKVAG+T+EEQIVA+NVDT+FLV++LN+D N+ Sbjct: 63 GDWVVISARPEEKKASIHGLLPRKSKFSRKVAGDTVEEQIVAANVDTVFLVNSLNNDLNL 122 Query: 132 RRMERYLIMAWNSGANPVILLTKSDLCPDAEHKIAEMERVAPGVAIHAVSALLGDGREEL 191 RR+ERYLI+AW SGANPVI+L+K+DLC D + +AE+E +A GV +H VSA G+G ++L Sbjct: 123 RRIERYLILAWESGANPVIVLSKADLCDDLDACMAEIESIAIGVPVHVVSAEQGEGLDQL 182 Query: 192 LPYIGIGQTVALTGSSGCGKSTMVNWLSGQTIQLTQDVREDDSRGRHTTTHRELFVLPDG 251 PY+G GQT+AL GSSG GKST++N LSG +Q VRE D RGRHTTTHRELF LP G Sbjct: 183 APYLGEGQTIALMGSSGVGKSTLINKLSGAEMQKVSGVREGDDRGRHTTTHRELFRLPSG 242 Query: 252 GIIVDTPGMRELQLWEDEGGLDLAFGDITRLAAECRFGDCRHEHEEGCAVLEAVASGELE 311 +++DTPGMRELQLWE + G AF DI +A CRF DC+H E GCAV A+ G LE Sbjct: 243 ALMIDTPGMRELQLWEADEGFRGAFDDIESIAETCRFNDCKHMREPGCAVQAAINDGSLE 302 Query: 312 EKRLLNYRKTQRELQYQSSKE 332 + R +Y K QREL + + KE Sbjct: 303 KARFDSYLKLQRELAHLARKE 323 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.133 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,355,310,838 Number of extensions: 103450100 Number of successful extensions: 446112 Number of sequences better than 1.0e-05: 1471 Number of HSP's gapped: 443117 Number of HSP's successfully gapped: 1472 Length of query: 362 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 225 Effective length of database: 1,770,017,148 Effective search space: 398253858300 Effective search space used: 398253858300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)