BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0450.0010.p (208 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2B105.1 Q2B105_9BACI Acyl carrier protein phosphodiesterase EC=... 296 1e-78 A6CJB9.1 A6CJB9_9BACI Acyl carrier protein phosphodiesterase 283 6e-75 B3KIP5.1 B3KIP5_9BACI NAD(P)H dehydrogenase (Quinone) 280 8e-74 C3AH83.1 C3AH83_BACMY FMN-dependent NADH-azoreductase 1 279 1e-73 C3AZ41.1 C3AZ41_BACMY FMN-dependent NADH-azoreductase 1 277 4e-73 >Q2B105.1 Q2B105_9BACI Acyl carrier protein phosphodiesterase EC=3.1.4.14 Length = 208 Score = 296 bits (757), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 138/208 (66%), Positives = 164/208 (78%) Query: 1 MSKVLFVKANNRPADQAVSVQLYNTFLASYKETHPQDEITELDLFAEQLPYYDNTLITGI 60 MS VLF+KAN+RPADQAVSVQLYN F+ SYKE HP ++ITELDLF E LPYY N ++ G+ Sbjct: 1 MSNVLFIKANSRPADQAVSVQLYNAFVESYKEAHPGEQITELDLFGENLPYYSNDMMGGM 60 Query: 61 YKAAQGYXXXXXXXXXXXXVKKYVDQFLAADKIVFAFPLWNMTVPAVLHTYIDYLSQAGV 120 +K A+G V KY+DQFLAADK+VFAFPLWN TVPAVLHTY+DYL QAG Sbjct: 61 FKLAKGMELTPAETEAANLVNKYLDQFLAADKVVFAFPLWNFTVPAVLHTYLDYLGQAGK 120 Query: 121 TFKYTAEGPVGLVTDKKAVILNARGGVYSEGPAASAEMAVNFVAGMLNFWGFKETTQVII 180 TF+YTAEGPVGL+ DKK V+LNARGG+YSEGPAASAEMAVN+V+ +LNFWG + +I+ Sbjct: 121 TFRYTAEGPVGLLGDKKVVLLNARGGIYSEGPAASAEMAVNYVSTILNFWGVQNVESIIV 180 Query: 181 EGHNQNPQQSAEIIAKGLELAKTAAASF 208 EGHNQ P ++ EII +GLE AK AA F Sbjct: 181 EGHNQFPDRAQEIINEGLEKAKAAAKEF 208 >A6CJB9.1 A6CJB9_9BACI Acyl carrier protein phosphodiesterase Length = 207 Score = 283 bits (724), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 132/205 (64%), Positives = 161/205 (78%) Query: 1 MSKVLFVKANNRPADQAVSVQLYNTFLASYKETHPQDEITELDLFAEQLPYYDNTLITGI 60 M KVLF+KAN+RP +Q+VSV+LY+TFL +YKE HPQD+I ELDLF E LPYY N +I G+ Sbjct: 1 MEKVLFIKANSRPIEQSVSVKLYHTFLDNYKEAHPQDQIIELDLFQENLPYYSNDMINGM 60 Query: 61 YKAAQGYXXXXXXXXXXXXVKKYVDQFLAADKIVFAFPLWNMTVPAVLHTYIDYLSQAGV 120 +K ++G V KY+ QFL ADK+VFAFPLWN TVPAVLHTY+DYL+QAG Sbjct: 61 FKFSKGMELTEEERQATETVNKYLQQFLDADKVVFAFPLWNFTVPAVLHTYLDYLAQAGK 120 Query: 121 TFKYTAEGPVGLVTDKKAVILNARGGVYSEGPAASAEMAVNFVAGMLNFWGFKETTQVII 180 TF+YT EGPVGL+TDKKAV+LNARGGVYSEGPA SAEM+V++V ML FWG ++ +VII Sbjct: 121 TFRYTPEGPVGLLTDKKAVLLNARGGVYSEGPAQSAEMSVSYVQTMLGFWGVEDIQKVII 180 Query: 181 EGHNQNPQQSAEIIAKGLELAKTAA 205 EGHNQ P+Q+ IIA+GLE A A Sbjct: 181 EGHNQYPEQAGSIIAEGLEKAAELA 205 >B3KIP5.1 B3KIP5_9BACI NAD(P)H dehydrogenase (Quinone) Length = 208 Score = 280 bits (715), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 136/208 (65%), Positives = 159/208 (76%) Query: 1 MSKVLFVKANNRPADQAVSVQLYNTFLASYKETHPQDEITELDLFAEQLPYYDNTLITGI 60 MS VLF+KANNR +Q+VSV++Y+ FL S+K +HP D+ITELDLFAE LPYYD T I+G+ Sbjct: 1 MSNVLFIKANNRAIEQSVSVKMYHEFLESFKASHPGDQITELDLFAENLPYYDGTAISGM 60 Query: 61 YKAAQGYXXXXXXXXXXXXVKKYVDQFLAADKIVFAFPLWNMTVPAVLHTYIDYLSQAGV 120 +KAA+G V KY+DQFLAADKIV AFPLWNMTVPAVLHTYIDYL+QAG Sbjct: 61 FKAAKGLEATPEEQAAAANVSKYLDQFLAADKIVLAFPLWNMTVPAVLHTYIDYLNQAGK 120 Query: 121 TFKYTAEGPVGLVTDKKAVILNARGGVYSEGPAASAEMAVNFVAGMLNFWGFKETTQVII 180 TFKYT +G VGLVT KK VILNARGG YSEGP A+AEMAVNFV G L WG ++ +II Sbjct: 121 TFKYTPQGVVGLVTGKKVVILNARGGNYSEGPMAAAEMAVNFVMGNLRQWGVQDIETLII 180 Query: 181 EGHNQNPQQSAEIIAKGLELAKTAAASF 208 EGHNQ P ++ I+ GLEL K AAA F Sbjct: 181 EGHNQFPDEAEMIVQNGLELVKKAAAGF 208 >C3AH83.1 C3AH83_BACMY FMN-dependent NADH-azoreductase 1 Length = 208 Score = 279 bits (713), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 130/208 (62%), Positives = 159/208 (76%) Query: 1 MSKVLFVKANNRPADQAVSVQLYNTFLASYKETHPQDEITELDLFAEQLPYYDNTLITGI 60 M+ VLFVKANNRPADQAVSV+LY FLASYKE+HP D + ELDLF E+LPY +I G Sbjct: 1 MTTVLFVKANNRPADQAVSVKLYEAFLASYKESHPNDTVVELDLFKEELPYVGVDMINGT 60 Query: 61 YKAAQGYXXXXXXXXXXXXVKKYVDQFLAADKIVFAFPLWNMTVPAVLHTYIDYLSQAGV 120 +KA++G+ KY+DQFLAADK+VF FPLWN+T+PAVLHTYIDYL++AG Sbjct: 61 FKASRGFDLTADESKAVAVADKYLDQFLAADKVVFGFPLWNLTIPAVLHTYIDYLNRAGK 120 Query: 121 TFKYTAEGPVGLVTDKKAVILNARGGVYSEGPAASAEMAVNFVAGMLNFWGFKETTQVII 180 TFKYT EGPVGL+ DKK +LNA GGVYSEGP A EMAV +VA M++F+G K+ +V+I Sbjct: 121 TFKYTPEGPVGLIGDKKIALLNASGGVYSEGPKAEMEMAVKYVASMMSFFGVKDMEKVVI 180 Query: 181 EGHNQNPQQSAEIIAKGLELAKTAAASF 208 EGHNQ P ++ EIIA GLE A T A++F Sbjct: 181 EGHNQFPDKAEEIIAAGLEKAVTVASTF 208 >C3AZ41.1 C3AZ41_BACMY FMN-dependent NADH-azoreductase 1 Length = 208 Score = 277 bits (708), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 129/208 (62%), Positives = 158/208 (75%) Query: 1 MSKVLFVKANNRPADQAVSVQLYNTFLASYKETHPQDEITELDLFAEQLPYYDNTLITGI 60 M+ VLFVKANNRPADQAVS +LY FLASYKE+HP D + ELDLF E+LPY +I G Sbjct: 1 MTTVLFVKANNRPADQAVSAKLYEAFLASYKESHPNDTVVELDLFKEELPYVGVDMINGT 60 Query: 61 YKAAQGYXXXXXXXXXXXXVKKYVDQFLAADKIVFAFPLWNMTVPAVLHTYIDYLSQAGV 120 +KA++G+ KY+DQFLAADK+VF FPLWN+T+PAVLHTYIDYL++AG Sbjct: 61 FKASRGFDLTADESKAVAVADKYLDQFLAADKVVFGFPLWNLTIPAVLHTYIDYLNRAGK 120 Query: 121 TFKYTAEGPVGLVTDKKAVILNARGGVYSEGPAASAEMAVNFVAGMLNFWGFKETTQVII 180 TFKYT EGPVGL+ DKK +LNA GGVYSEGP A EMAV +VA M++F+G K+ +V+I Sbjct: 121 TFKYTPEGPVGLIGDKKIALLNASGGVYSEGPKAEMEMAVKYVASMMSFFGVKDMEKVVI 180 Query: 181 EGHNQNPQQSAEIIAKGLELAKTAAASF 208 EGHNQ P ++ EIIA GLE A T A++F Sbjct: 181 EGHNQFPDKAEEIIAAGLEKAVTVASTF 208 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.132 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,060,687,780 Number of extensions: 37563688 Number of successful extensions: 86911 Number of sequences better than 1.0e-05: 952 Number of HSP's gapped: 86462 Number of HSP's successfully gapped: 952 Length of query: 208 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 78 Effective length of database: 1,835,964,253 Effective search space: 143205211734 Effective search space used: 143205211734 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)