BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0450.0006.p (335 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6U1.1 B3K6U1_9BACI ABC transporter substrate-binding protein 497 e-139 B1DG11.1 B1DG11_9BACL ABC transporter substrate-binding protein 465 e-129 C5D6T1.1 C5D6T1_9BACI ABC transporter substrate-binding protein 422 e-116 A6CMC0.1 A6CMC0_9BACI Nitrate/sulfonate/taurine/bicarbonate ABC ... 420 e-116 A4IRZ5.1 A4IRZ5_GEOTN ABC transporter substrate-binding protein 420 e-115 >B3K6U1.1 B3K6U1_9BACI ABC transporter substrate-binding protein Length = 334 Score = 497 bits (1280), Expect = e-139, Method: Compositional matrix adjust. Identities = 240/331 (72%), Positives = 272/331 (82%) Query: 1 MNLRKKISLPLMILTMCLSVLAGCGSDSAAVKVKIGEVTRSVFYAPEYVALSQNFFKDEG 60 M +K L L + +C LAGCG +A KVKIGEVTRS+FYAP+YVAL + FFK+EG Sbjct: 1 MKRQKWWGLALSLFLVCGVALAGCGGGGSATKVKIGEVTRSIFYAPQYVALEKGFFKEEG 60 Query: 61 LEAELQTIPGGDKTMTALLSGAIDVALVGSETSIYVYQQGAEDPVINFAQLTQRDGTFLF 120 L+ ELQT PGGDKTMTALLSGAIDVALVGSETSIYVYQQG+EDPVINF Q+TQ DGTFL Sbjct: 61 LDVELQTTPGGDKTMTALLSGAIDVALVGSETSIYVYQQGSEDPVINFGQVTQTDGTFLM 120 Query: 121 ARKADADFNWDKLKGSTFLGQRKGGMPQMAGAFTLLQKGIDAGKDLTLIQNIDFANIAGA 180 AR DF+W+ LKG FLGQRKGGMPQMAG FTL KGID DL LIQNIDFANIA A Sbjct: 121 ARDGSGDFDWNSLKGKVFLGQRKGGMPQMAGEFTLRNKGIDPHADLELIQNIDFANIASA 180 Query: 181 FASGTGDYVQLFEPTASIFEREHRGSVVASFGVESGYLPYTVFMSKQSYISKNGDTVQKF 240 +ASGTG++VQLFEP ASIFE+E RG VVASFGVESG+LPYTVFM+KQSYI KN TVQKF Sbjct: 181 YASGTGEFVQLFEPQASIFEKEGRGKVVASFGVESGHLPYTVFMTKQSYIDKNDATVQKF 240 Query: 241 TNAIQRAQVWVKEHSPEEIADAILPYFENTDRDIVISSVKRYKEQDTYAVDPVIDGKEWN 300 TNA+ +AQ WV SPE+IADAILPYF+++DRDIV+SSVKRYKEQ +YA DP++D EWN Sbjct: 241 TNALYKAQQWVDASSPEDIADAILPYFKDSDRDIVVSSVKRYKEQGSYASDPIVDEAEWN 300 Query: 301 NLLDVMDNAGELKARVPEAKIVDNSFAEKAE 331 NLLDVM+ AGELK RV IV+NSFAEKA+ Sbjct: 301 NLLDVMEQAGELKERVAPDAIVNNSFAEKAK 331 >B1DG11.1 B1DG11_9BACL ABC transporter substrate-binding protein Length = 336 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 227/336 (67%), Positives = 267/336 (79%), Gaps = 4/336 (1%) Query: 3 LRKKISLPLMILTMCLSV--LAGCGS-DSAAVKVKIGEVTRSVFYAPEYVALSQNFFKDE 59 +R+K+ L L+++ + LAGCG +S VK+ IGEVTRSVFYAPEYVAL++ FF DE Sbjct: 1 MRRKLWLSLLLIVALTTTAALAGCGKGNSDKVKLTIGEVTRSVFYAPEYVALAKGFFADE 60 Query: 60 GLEAELQTIPGGDKTMTALLSGAIDVALVGSETSIYVYQQGAEDPVINFAQLTQRDGTFL 119 GL+ L T GGDKTMTALLS IDVALVGSETSIYVYQQG++DPVINFAQ+TQ DGTFL Sbjct: 61 GLDVTLTTTAGGDKTMTALLSNTIDVALVGSETSIYVYQQGSDDPVINFAQVTQTDGTFL 120 Query: 120 FARKADADFNWDKLKGSTFLGQRKGGMPQMAGAFTLLQKGIDAGKDLTLIQNIDFANIAG 179 AR D +F+W+ LKG+TFLGQRKGGMPQMAG FTL + ID DL LIQN+DFANIA Sbjct: 121 VARN-DTNFDWNNLKGATFLGQRKGGMPQMAGEFTLRKHNIDPHADLELIQNVDFANIAP 179 Query: 180 AFASGTGDYVQLFEPTASIFEREHRGSVVASFGVESGYLPYTVFMSKQSYISKNGDTVQK 239 AFASGTGDYVQLFEPTAS+FE++ G VVASFGVESG+LPYTVFM+KQSYI KN +Q Sbjct: 180 AFASGTGDYVQLFEPTASVFEKQGTGKVVASFGVESGHLPYTVFMAKQSYIKKNTAAIQS 239 Query: 240 FTNAIQRAQVWVKEHSPEEIADAILPYFENTDRDIVISSVKRYKEQDTYAVDPVIDGKEW 299 FT+A+ RAQ+WV+E+ IAD + PYF+N DRDI++SS+ RYK+Q +YA DPVID EW Sbjct: 240 FTDAVHRAQLWVQENDASTIADVVAPYFDNVDRDILVSSIDRYKQQGSYATDPVIDEGEW 299 Query: 300 NNLLDVMDNAGELKARVPEAKIVDNSFAEKAEASVK 335 NNLLDVM AGELK R KIVDNSFAEK+ VK Sbjct: 300 NNLLDVMTQAGELKERTEYGKIVDNSFAEKSIVDVK 335 >C5D6T1.1 C5D6T1_9BACI ABC transporter substrate-binding protein Length = 332 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 205/327 (62%), Positives = 249/327 (76%), Gaps = 2/327 (0%) Query: 5 KKISLPLMILTMCLSVLAGCGSDSAA--VKVKIGEVTRSVFYAPEYVALSQNFFKDEGLE 62 KKI++ + L + + LA C + V++ EVTRS+FYAP+YVALS+ FFK+EGL+ Sbjct: 2 KKIAMISLFLFLLIIPLAACNKQTKEEIKTVRVAEVTRSIFYAPQYVALSKGFFKNEGLK 61 Query: 63 AELQTIPGGDKTMTALLSGAIDVALVGSETSIYVYQQGAEDPVINFAQLTQRDGTFLFAR 122 EL T GGDKTMT LLSG D+ALVGSETSIYVY QG DPVINFAQLTQ DGTFL +R Sbjct: 62 VELTTTWGGDKTMTTLLSGGADIALVGSETSIYVYSQGTNDPVINFAQLTQTDGTFLVSR 121 Query: 123 KADADFNWDKLKGSTFLGQRKGGMPQMAGAFTLLQKGIDAGKDLTLIQNIDFANIAGAFA 182 +F WD+LKGSTFLGQRKGGMPQM G F L + GID KDL LIQN+DFANIA AFA Sbjct: 122 NKIENFTWDQLKGSTFLGQRKGGMPQMVGEFVLKKHGIDPHKDLKLIQNVDFANIANAFA 181 Query: 183 SGTGDYVQLFEPTASIFEREHRGSVVASFGVESGYLPYTVFMSKQSYISKNGDTVQKFTN 242 SGTGD+VQLFEPTASIFE+E +G +VASFG ESG++PYT FM+KQS+I N DT++KFT Sbjct: 182 SGTGDFVQLFEPTASIFEQEGKGYIVASFGTESGHVPYTTFMAKQSFIKNNKDTIEKFTR 241 Query: 243 AIQRAQVWVKEHSPEEIADAILPYFENTDRDIVISSVKRYKEQDTYAVDPVIDGKEWNNL 302 A+ +A+ WV+ HS E+A AI PYF++TD I+ V RYK Q TYA +PV+D +EWNNL Sbjct: 242 ALYKAEQWVETHSAAEVAKAIQPYFKDTDIQIIEKVVDRYKSQGTYATNPVLDKEEWNNL 301 Query: 303 LDVMDNAGELKARVPEAKIVDNSFAEK 329 ++MD AGEL R+ +VDNSFAEK Sbjct: 302 QNIMDEAGELPKRIDHETLVDNSFAEK 328 >A6CMC0.1 A6CMC0_9BACI Nitrate/sulfonate/taurine/bicarbonate ABC transporter (Substrate binding protein) Length = 334 Score = 420 bits (1080), Expect = e-116, Method: Compositional matrix adjust. Identities = 200/325 (61%), Positives = 252/325 (77%), Gaps = 1/325 (0%) Query: 6 KISLPL-MILTMCLSVLAGCGSDSAAVKVKIGEVTRSVFYAPEYVALSQNFFKDEGLEAE 64 KIS L MIL + + VL + KV++ EVTRS+FYAP+YVAL + FF++EGLE E Sbjct: 6 KISFSLFMILILSIGVLGCANQEQELEKVRVAEVTRSIFYAPQYVALEKGFFEEEGLEIE 65 Query: 65 LQTIPGGDKTMTALLSGAIDVALVGSETSIYVYQQGAEDPVINFAQLTQRDGTFLFARKA 124 L T GGDKTMT LL+ DVALVGSETSIYV QG+ DPVINFAQLTQ DGTFL +R+ Sbjct: 66 LTTTWGGDKTMTTLLADGADVALVGSETSIYVDSQGSSDPVINFAQLTQTDGTFLVSREN 125 Query: 125 DADFNWDKLKGSTFLGQRKGGMPQMAGAFTLLQKGIDAGKDLTLIQNIDFANIAGAFASG 184 +F+W++LKGSTFLGQRKGGMPQM G F L ++GID KDL LIQNIDFANIA AFASG Sbjct: 126 VENFDWEQLKGSTFLGQRKGGMPQMVGEFVLKKQGIDPHKDLNLIQNIDFANIANAFASG 185 Query: 185 TGDYVQLFEPTASIFEREHRGSVVASFGVESGYLPYTVFMSKQSYISKNGDTVQKFTNAI 244 TGDYVQLFEPTASIFE+E +G +VASFG +SG++PYT FM+K+SY+++N DT++KFT AI Sbjct: 186 TGDYVQLFEPTASIFEKEGKGHIVASFGEQSGHVPYTTFMAKESYMNENNDTIEKFTRAI 245 Query: 245 QRAQVWVKEHSPEEIADAILPYFENTDRDIVISSVKRYKEQDTYAVDPVIDGKEWNNLLD 304 +AQ WV+EH P E A+ I YFE+T+ DI+ + V RY+ Q +YA DP++D +EWNNL + Sbjct: 246 FKAQKWVEEHDPAETAEIIQSYFEDTELDIIKTVVDRYRSQGSYATDPILDVEEWNNLQN 305 Query: 305 VMDNAGELKARVPEAKIVDNSFAEK 329 +MD AGEL R+ K+V+ + AE+ Sbjct: 306 IMDEAGELPGRIEHDKLVNTTIAEE 330 >A4IRZ5.1 A4IRZ5_GEOTN ABC transporter substrate-binding protein Length = 334 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 199/313 (63%), Positives = 245/313 (78%), Gaps = 5/313 (1%) Query: 22 AGCGSDS-----AAVKVKIGEVTRSVFYAPEYVALSQNFFKDEGLEAELQTIPGGDKTMT 76 A CG+D+ KV++ EVTRS+FYAP+YVAL++ FF++EGL+ EL T GGDKTMT Sbjct: 18 AACGNDADQKEKTLTKVRLAEVTRSIFYAPQYVALAKGFFEEEGLDVELTTTWGGDKTMT 77 Query: 77 ALLSGAIDVALVGSETSIYVYQQGAEDPVINFAQLTQRDGTFLFARKADADFNWDKLKGS 136 LLSG D+ALVGSETSIYVY QG DPVINFAQLTQ DGTFL +RK +F W+ LKGS Sbjct: 78 TLLSGGADIALVGSETSIYVYAQGTNDPVINFAQLTQTDGTFLVSRKKIDNFTWEMLKGS 137 Query: 137 TFLGQRKGGMPQMAGAFTLLQKGIDAGKDLTLIQNIDFANIAGAFASGTGDYVQLFEPTA 196 TFLGQRKGGMPQM G F L Q GID +DL LIQN+DFANIA AFASGTGD+VQLFEPTA Sbjct: 138 TFLGQRKGGMPQMVGEFVLKQHGIDPHQDLKLIQNVDFANIANAFASGTGDFVQLFEPTA 197 Query: 197 SIFEREHRGSVVASFGVESGYLPYTVFMSKQSYISKNGDTVQKFTNAIQRAQVWVKEHSP 256 SIFE+E +G ++ASFG ESG +PYT +M+KQSY++KN D ++KFT AI +AQ WV+ HS Sbjct: 198 SIFEQEGKGYIIASFGTESGRVPYTTYMAKQSYMNKNKDIIEKFTRAIYKAQQWVESHST 257 Query: 257 EEIADAILPYFENTDRDIVISSVKRYKEQDTYAVDPVIDGKEWNNLLDVMDNAGELKARV 316 +EIA I PYFE+T+ DI+ + V RYK Q +YA DP++D +EWNNL ++MD AGEL R+ Sbjct: 258 KEIAKVIQPYFEDTELDIIETVVDRYKSQGSYATDPILDEEEWNNLQNIMDEAGELPKRI 317 Query: 317 PEAKIVDNSFAEK 329 +VD+SFA+K Sbjct: 318 DLDTLVDSSFAKK 330 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.133 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,946,601,151 Number of extensions: 82868295 Number of successful extensions: 210340 Number of sequences better than 1.0e-05: 418 Number of HSP's gapped: 210293 Number of HSP's successfully gapped: 418 Length of query: 335 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 199 Effective length of database: 1,779,438,163 Effective search space: 354108194437 Effective search space used: 354108194437 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)