BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0450.0005.p (259 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6U0.1 B3K6U0_9BACI ABC transporter related 337 7e-91 B7GK33.1 B7GK33_ANOFW ABC-type nitrate/sulfonate/bicarbonate tra... 305 2e-81 B1DG12.1 B1DG12_9BACL ABC transporter related 303 9e-81 A9VLE4.1 A9VLE4_BACWK ABC transporter related 303 1e-80 C2Y0Q1.1 C2Y0Q1_BACCE ABC transporter-related protein 302 2e-80 >B3K6U0.1 B3K6U0_9BACI ABC transporter related Length = 229 Score = 337 bits (864), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 162/228 (71%), Positives = 187/228 (82%) Query: 29 LYVEAGEFVSLVGPSGCGKTTLLSIIAGLLQPSRGEVFVSGHTVSGPSPEVGYMLQQDYL 88 + VE GEF+SLVGPSGCGKTT+LS+IAGLL PS+G +V+G V+GPSPEVGYMLQQDYL Sbjct: 1 MKVEPGEFISLVGPSGCGKTTILSVIAGLLAPSKGAAYVNGKPVNGPSPEVGYMLQQDYL 60 Query: 89 FPWRTILDNALLGLELTGRLNESSRQKTIGLLGEMGLAGKEHAYPAQLSGGMRQRVALVR 148 FPWRTI+DNAL+GLELT RLN SR LL EMGL + YPAQLSGGMRQRVALVR Sbjct: 61 FPWRTIMDNALIGLELTERLNPQSRSVVGNLLREMGLGESGNLYPAQLSGGMRQRVALVR 120 Query: 149 TLSTDPGLLLLDEPFSALDYQIKLQLEDLVSETLRRRGTTAILVTHDLSEAIAVSSRVIL 208 TL+TDPGLLLLDEPFSALDYQ KLQLEDL+ ETL+ RG TAILVTHDLSEAIA+S RVIL Sbjct: 121 TLATDPGLLLLDEPFSALDYQTKLQLEDLIVETLKERGKTAILVTHDLSEAIAMSDRVIL 180 Query: 209 LQPNPGKIRKIFTVPEAIRSTPPLYARDLPGFAELFHEVWKEMELAGR 256 L NPG++ ++F +P+ IR P +AR PGF ELFHE+W EM+ G+ Sbjct: 181 LNRNPGRVHRLFDIPDNIRRAQPFFARKEPGFNELFHEIWGEMQTIGK 228 >B7GK33.1 B7GK33_ANOFW ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Length = 259 Score = 305 bits (781), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 141/252 (55%), Positives = 192/252 (76%) Query: 1 MLPIVQLKEVTHAYLGDREASLAVENFSLYVEAGEFVSLVGPSGCGKTTLLSIIAGLLQP 60 ++PI+ + +V HAY+ + A LA+++ SL VE GEFVS +GPSGCGKTTLLSI+AGL++P Sbjct: 3 IMPILTIDQVMHAYVTKQSAVLALDHLSLTVERGEFVSFLGPSGCGKTTLLSIVAGLIKP 62 Query: 61 SRGEVFVSGHTVSGPSPEVGYMLQQDYLFPWRTILDNALLGLELTGRLNESSRQKTIGLL 120 ++G V + G + S +GYMLQ DYLFPW+TI N LGL+LTG+ +E +R++T+ LL Sbjct: 63 TKGRVLIEGKEMHTMSQTIGYMLQHDYLFPWKTIEQNVTLGLKLTGKYSEKTRKQTLSLL 122 Query: 121 GEMGLAGKEHAYPAQLSGGMRQRVALVRTLSTDPGLLLLDEPFSALDYQIKLQLEDLVSE 180 ++GL + YP +LSGGMRQR ALVRTL+TDP +LLLDEPFSALDYQ KL+LEDLV E Sbjct: 123 HQIGLRDVDDRYPYELSGGMRQRAALVRTLATDPKILLLDEPFSALDYQTKLKLEDLVWE 182 Query: 181 TLRRRGTTAILVTHDLSEAIAVSSRVILLQPNPGKIRKIFTVPEAIRSTPPLYARDLPGF 240 TL++ TA+LVTHD+ EAIA+S R++L PGKI++I TVP+++++ P AR P F Sbjct: 183 TLKQYRKTALLVTHDIGEAIAMSDRIVLFTAKPGKIKRIVTVPDSLKACTPFQARQHPDF 242 Query: 241 AELFHEVWKEME 252 + LF +WKE+E Sbjct: 243 SPLFQMIWKELE 254 >B1DG12.1 B1DG12_9BACL ABC transporter related Length = 264 Score = 303 bits (776), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 150/253 (59%), Positives = 190/253 (75%) Query: 5 VQLKEVTHAYLGDREASLAVENFSLYVEAGEFVSLVGPSGCGKTTLLSIIAGLLQPSRGE 64 ++LK+V+H Y+ ++ ASLAVEN +L V GEFVSLVGPSGCGKTT+LS++AGL PS G+ Sbjct: 8 LELKDVSHVYVNEKGASLAVENLNLTVRRGEFVSLVGPSGCGKTTILSMLAGLFPPSGGQ 67 Query: 65 VFVSGHTVSGPSPEVGYMLQQDYLFPWRTILDNALLGLELTGRLNESSRQKTIGLLGEMG 124 V ++G V GPS VGYMLQQD+LFPWRTI DNA +GLE+ G ++ ++ LL E+G Sbjct: 68 VLLAGAPVLGPSRLVGYMLQQDFLFPWRTIRDNAAIGLEIAGGKTAAAMKEVDRLLSELG 127 Query: 125 LAGKEHAYPAQLSGGMRQRVALVRTLSTDPGLLLLDEPFSALDYQIKLQLEDLVSETLRR 184 L G YP +LSGGMRQRVAL R L+T+P ++LLDEPFSALD IKLQLEDLV ETL+R Sbjct: 128 LPGSGSKYPHELSGGMRQRVALARMLATNPEVMLLDEPFSALDLHIKLQLEDLVDETLKR 187 Query: 185 RGTTAILVTHDLSEAIAVSSRVILLQPNPGKIRKIFTVPEAIRSTPPLYARDLPGFAELF 244 G TA+LVTHDL+EA A+S RVI+L NPG+I K VP+ IR P+ AR LPGF ++F Sbjct: 188 LGKTAVLVTHDLAEAAAMSDRVIVLAANPGRIVKELVVPDEIRQATPMEARKLPGFQDVF 247 Query: 245 HEVWKEMELAGRG 257 ++W E+ A G Sbjct: 248 DQLWAELNRAEGG 260 >A9VLE4.1 A9VLE4_BACWK ABC transporter related Length = 254 Score = 303 bits (775), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 145/254 (57%), Positives = 185/254 (72%) Query: 2 LPIVQLKEVTHAYLGDREASLAVENFSLYVEAGEFVSLVGPSGCGKTTLLSIIAGLLQPS 61 + +Q++ V+H + A L +E+ SL VE GEF+S++GPSGCGKTTLLSIIAGLL P Sbjct: 1 MSFLQIRNVSHCFFAKENAKLILEDMSLQVEEGEFISILGPSGCGKTTLLSIIAGLLNPI 60 Query: 62 RGEVFVSGHTVSGPSPEVGYMLQQDYLFPWRTILDNALLGLELTGRLNESSRQKTIGLLG 121 G VF+ G ++ +P +GYMLQQDYLFPW+TI +N +LGL + +E++++ T+ LL Sbjct: 61 EGIVFLDGEPITTKTPSMGYMLQQDYLFPWKTIEENIMLGLHIRKVYDENTKEHTLKLLK 120 Query: 122 EMGLAGKEHAYPAQLSGGMRQRVALVRTLSTDPGLLLLDEPFSALDYQIKLQLEDLVSET 181 ++GL E YP +LSGGMRQR ALVRTL+TDP +LLLDEPFSALDYQ KL+LEDLV Sbjct: 121 QVGLYDIEQQYPRELSGGMRQRAALVRTLATDPKILLLDEPFSALDYQTKLKLEDLVFTL 180 Query: 182 LRRRGTTAILVTHDLSEAIAVSSRVILLQPNPGKIRKIFTVPEAIRSTPPLYARDLPGFA 241 LR T++LVTHD+ EAIA+S R+ LLQ NPGKI K F VPE+IRS PL AR F Sbjct: 181 LRNYKKTSLLVTHDIEEAIAMSDRIYLLQANPGKIAKTFIVPESIRSLSPLEARHHHDFP 240 Query: 242 ELFHEVWKEMELAG 255 LF E+WKE+E G Sbjct: 241 SLFQEIWKELERLG 254 >C2Y0Q1.1 C2Y0Q1_BACCE ABC transporter-related protein Length = 254 Score = 302 bits (774), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 145/254 (57%), Positives = 185/254 (72%) Query: 2 LPIVQLKEVTHAYLGDREASLAVENFSLYVEAGEFVSLVGPSGCGKTTLLSIIAGLLQPS 61 + +Q++ V+H + A L +E+ SL VE GEF+S++GPSGCGKTTLLSIIAGLL P Sbjct: 1 MSFLQIRNVSHCFFAKENAKLILEDMSLQVEEGEFISILGPSGCGKTTLLSIIAGLLDPI 60 Query: 62 RGEVFVSGHTVSGPSPEVGYMLQQDYLFPWRTILDNALLGLELTGRLNESSRQKTIGLLG 121 G VF+ G ++ +P +GYMLQQDYLFPW+TI +N +LGL + +E++++ T+ LL Sbjct: 61 EGIVFLDGEPITTKTPSMGYMLQQDYLFPWKTIEENIMLGLHIRKVYDENTKEHTLKLLK 120 Query: 122 EMGLAGKEHAYPAQLSGGMRQRVALVRTLSTDPGLLLLDEPFSALDYQIKLQLEDLVSET 181 ++GL E YP +LSGGMRQR ALVRTL+TDP +LLLDEPFSALDYQ KL+LEDLV Sbjct: 121 QVGLYDIEQQYPRELSGGMRQRAALVRTLATDPKILLLDEPFSALDYQTKLKLEDLVFTL 180 Query: 182 LRRRGTTAILVTHDLSEAIAVSSRVILLQPNPGKIRKIFTVPEAIRSTPPLYARDLPGFA 241 LR T++LVTHD+ EAIA+S R+ LLQ NPGKI K F VPE+IRS PL AR F Sbjct: 181 LRNYKKTSLLVTHDIEEAIAMSDRIYLLQANPGKIAKTFIVPESIRSLSPLEARHHHDFP 240 Query: 242 ELFHEVWKEMELAG 255 LF E+WKE+E G Sbjct: 241 SLFQEIWKELERLG 254 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.138 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,520,261,654 Number of extensions: 60261360 Number of successful extensions: 501807 Number of sequences better than 1.0e-05: 95346 Number of HSP's gapped: 390303 Number of HSP's successfully gapped: 102948 Length of query: 259 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 126 Effective length of database: 1,807,701,208 Effective search space: 227770352208 Effective search space used: 227770352208 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)