BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0450.0004.p (201 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6T9.1 B3K6T9_9BACI Binding-protein-dependent transport system... 259 9e-68 B1DG13.1 B1DG13_9BACL Binding-protein-dependent transport system... 219 1e-55 C1P923.1 C1P923_BACCO Binding-protein-dependent transport system... 211 2e-53 C0ZBP5.1 C0ZBP5_BREBN ABC transporter permease protein 207 5e-52 B1HPU3.1 B1HPU3_LYSSC Putative aliphatic sulfonates transport pe... 206 7e-52 >B3K6T9.1 B3K6T9_9BACI Binding-protein-dependent transport systems inner membrane component Length = 277 Score = 259 bits (662), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 129/201 (64%), Positives = 149/201 (74%) Query: 1 MASGSLWPHLGMXXXXXXXXXXXXXXXXXXXAIVIWWSPFLSAVLDPYMVVFNSMPKVAL 60 M SG LW HLG+ A++IWWSPFL+ VLDPYMVVFNSMPKVAL Sbjct: 77 MISGELWGHLGVTVGETVVGFLLGTLVGTLMAVLIWWSPFLNKVLDPYMVVFNSMPKVAL 136 Query: 61 GPIFIVMFGAGFTAXXXXXXXXXXXXXXXXXYNSFCSVDPNLVKVARSFGASRVQVFNKV 120 GPIFIVMFGAGFTA YNSF VD NL+KV R+FG ++ QVF +V Sbjct: 137 GPIFIVMFGAGFTAIVVTTLSITVIVTTLVVYNSFNEVDSNLIKVVRTFGGTKRQVFQRV 196 Query: 121 ILPSSFPTVVSTLKVNVGMSWVGVIVGEFLAAKSGLGYLIIYGFQVFNFTLVMSSLLIIA 180 ILP+S+P +VSTLKVNVGM+WVGVIVGEFL AKSGLGYLI+YGFQVFNFTLV+SSLLIIA Sbjct: 197 ILPASYPAIVSTLKVNVGMAWVGVIVGEFLVAKSGLGYLIMYGFQVFNFTLVLSSLLIIA 256 Query: 181 AVATAMYQLVVYVEKLILSRR 201 VATAMYQ+VVY+E+ +L+ R Sbjct: 257 VVATAMYQIVVYIERKLLTHR 277 >B1DG13.1 B1DG13_9BACL Binding-protein-dependent transport systems inner membrane component Length = 288 Score = 219 bits (558), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 108/199 (54%), Positives = 134/199 (67%) Query: 1 MASGSLWPHLGMXXXXXXXXXXXXXXXXXXXAIVIWWSPFLSAVLDPYMVVFNSMPKVAL 60 MA GS+WPH+GM A ++WW PFLS VLDPY+VV NS+PKVAL Sbjct: 85 MADGSIWPHIGMTVSETIIGFLLGTLVGTGIAALLWWFPFLSRVLDPYLVVLNSLPKVAL 144 Query: 61 GPIFIVMFGAGFTAXXXXXXXXXXXXXXXXXYNSFCSVDPNLVKVARSFGASRVQVFNKV 120 GP+FIV G GFT+ YN F ++ +KV R FGASR Q+F V Sbjct: 145 GPLFIVTLGPGFTSIVAVTLSVTVIITTINIYNRFREIEAGYIKVVRLFGASRAQLFRLV 204 Query: 121 ILPSSFPTVVSTLKVNVGMSWVGVIVGEFLAAKSGLGYLIIYGFQVFNFTLVMSSLLIIA 180 ILP+SFP ++S LKVNVG++W+GVIVGEFL AK GLGYL+IYGFQVFNFTLV+S+L++IA Sbjct: 205 ILPASFPVIISALKVNVGLAWIGVIVGEFLVAKLGLGYLMIYGFQVFNFTLVLSTLIVIA 264 Query: 181 AVATAMYQLVVYVEKLILS 199 VAT MYQLV +E+ + S Sbjct: 265 VVATIMYQLVAILERKLTS 283 >C1P923.1 C1P923_BACCO Binding-protein-dependent transport systems inner membrane component Length = 268 Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 106/201 (52%), Positives = 133/201 (66%) Query: 1 MASGSLWPHLGMXXXXXXXXXXXXXXXXXXXAIVIWWSPFLSAVLDPYMVVFNSMPKVAL 60 + GSL+ HLG+ A V+WWSPFLS +LDPY+VV N+MPKVAL Sbjct: 68 LEDGSLYVHLGITVFETVMGFILGTVLGAALAAVLWWSPFLSKILDPYLVVLNAMPKVAL 127 Query: 61 GPIFIVMFGAGFTAXXXXXXXXXXXXXXXXXYNSFCSVDPNLVKVARSFGASRVQVFNKV 120 GPI IV G GF++ Y +F VDPN KV SFGASR+QVF + Sbjct: 128 GPILIVSMGPGFSSIVAMGVIISVIVTTIVIYTAFRDVDPNYTKVLHSFGASRLQVFREA 187 Query: 121 ILPSSFPTVVSTLKVNVGMSWVGVIVGEFLAAKSGLGYLIIYGFQVFNFTLVMSSLLIIA 180 I P+S P ++STLKVNVG++WVGVIVGE+L + GLGY+IIYGFQVFNFTLVM S+++IA Sbjct: 188 IFPASIPVIISTLKVNVGLAWVGVIVGEYLVSSKGLGYMIIYGFQVFNFTLVMLSMILIA 247 Query: 181 AVATAMYQLVVYVEKLILSRR 201 VAT MYQLV ++EK ++ R Sbjct: 248 IVATIMYQLVGWLEKKLVKDR 268 >C0ZBP5.1 C0ZBP5_BREBN ABC transporter permease protein Length = 268 Score = 207 bits (526), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 105/200 (52%), Positives = 132/200 (66%) Query: 1 MASGSLWPHLGMXXXXXXXXXXXXXXXXXXXAIVIWWSPFLSAVLDPYMVVFNSMPKVAL 60 + GSL PH+G+ A +IWWSPFLS VL+PY+V+ NSMPKVAL Sbjct: 67 LQDGSLLPHVGLTVWETIIGFLLGTILGTVMATIIWWSPFLSRVLEPYLVIANSMPKVAL 126 Query: 61 GPIFIVMFGAGFTAXXXXXXXXXXXXXXXXXYNSFCSVDPNLVKVARSFGASRVQVFNKV 120 GP+FIV FG G + Y SF V+ N VKV ++ G S+ Q+F V Sbjct: 127 GPVFIVGFGPGLLSVIAMGCAISVIITTINVYTSFKEVNQNYVKVVQTLGGSKRQIFTLV 186 Query: 121 ILPSSFPTVVSTLKVNVGMSWVGVIVGEFLAAKSGLGYLIIYGFQVFNFTLVMSSLLIIA 180 ILP++ PT+++TLKVNVG+SWVGVIVGEFL ++ GLGYLIIYGFQVFNFTLVM SL IIA Sbjct: 187 ILPATIPTLLATLKVNVGLSWVGVIVGEFLVSQQGLGYLIIYGFQVFNFTLVMMSLAIIA 246 Query: 181 AVATAMYQLVVYVEKLILSR 200 +AT MYQ V Y+E+ + S+ Sbjct: 247 VIATLMYQGVAYIERRLTSQ 266 >B1HPU3.1 B1HPU3_LYSSC Putative aliphatic sulfonates transport permease protein Length = 264 Score = 206 bits (525), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 106/199 (53%), Positives = 131/199 (65%) Query: 3 SGSLWPHLGMXXXXXXXXXXXXXXXXXXXAIVIWWSPFLSAVLDPYMVVFNSMPKVALGP 62 G+L H+G+ AI++WWSPFLS VLDPY+V+ N+MPKVALGP Sbjct: 65 DGTLTLHVGVTLMETVIGFIAGTLLGTLIAILLWWSPFLSKVLDPYLVILNAMPKVALGP 124 Query: 63 IFIVMFGAGFTAXXXXXXXXXXXXXXXXXYNSFCSVDPNLVKVARSFGASRVQVFNKVIL 122 I IV G G+ + Y +F VDPN KV ++FGA+R Q+F +VIL Sbjct: 125 ILIVALGPGYFSIIAMGALISIIITTIVVYTAFKGVDPNYSKVLQTFGATRWQIFREVIL 184 Query: 123 PSSFPTVVSTLKVNVGMSWVGVIVGEFLAAKSGLGYLIIYGFQVFNFTLVMSSLLIIAAV 182 P+SFPT++STLKVNVG+SWVGVIVGEFL A GLGYLIIYGFQVFNF LV+ SLLIIA Sbjct: 185 PASFPTIISTLKVNVGLSWVGVIVGEFLVASKGLGYLIIYGFQVFNFNLVLMSLLIIAFF 244 Query: 183 ATAMYQLVVYVEKLILSRR 201 AT MYQ+V +EK ++ Sbjct: 245 ATIMYQVVELIEKSVIKNN 263 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.140 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 887,406,611 Number of extensions: 27647945 Number of successful extensions: 145113 Number of sequences better than 1.0e-05: 2683 Number of HSP's gapped: 144407 Number of HSP's successfully gapped: 2684 Length of query: 201 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 72 Effective length of database: 1,845,385,268 Effective search space: 132867739296 Effective search space used: 132867739296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 128 (53.9 bits)