BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0449.0006.p (331 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K5G9.1 B3K5G9_9BACI Transport system permease protein 330 1e-88 Q9K6D9.1 Q9K6D9_BACHD Iron (III) dicitrate transport system (Per... 243 1e-62 A3I5R8.1 A3I5R8_9BACI Iron (III) dicitrate transport system (Per... 243 2e-62 Q2SGM1.1 Q2SGM1_HAHCH ABC-type Fe3+-siderophore transport system... 238 4e-61 B4AG43.1 B4AG43_BACPU Ferrichrome transport system permease prot... 226 2e-57 >B3K5G9.1 B3K5G9_9BACI Transport system permease protein Length = 331 Score = 330 bits (847), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 175/331 (52%), Positives = 208/331 (62%) Query: 1 MSKRNTXXXXXXXXXXCGAFTASLMLGRTVMSWSTLVLAFTDYDAGAVDQLIVRTERLAR 60 M+KRN GAF ASL+LGRT SW TLV +FT Y+ VD LI+RTERL+R Sbjct: 1 MNKRNALLLLSAFILMAGAFIASLLLGRTNYSWVTLVSSFTQYNPEQVDHLIIRTERLSR 60 Query: 61 AVIALAVGASLSVAGTLMQAMTRNPLASPDVFGISSGAIXXXXXXXXXXXXXXXXXXSXX 120 AVIAL+VGA++S+AG +MQA+TRNPLASPDVFGI+SGAI + Sbjct: 61 AVIALSVGAAVSLAGAMMQALTRNPLASPDVFGINSGAILLVVLATLLNPSSPMLHLALY 120 Query: 121 XXXXXXXXXXXXXXXXSLGRDGLTPVKLVLAGSAITALFASCTQALLVMNDSGLQDVLFW 180 SLGRDGLTP+KLVLAGSAITALF+S TQA+LVMN++GLQDVLFW Sbjct: 121 AVGGATVSAFIVYGLGSLGRDGLTPIKLVLAGSAITALFSSGTQAILVMNENGLQDVLFW 180 Query: 181 LAGSISGRSLENVRPLLPFIVFAGLIAMSLGRALNLLTTGEDIAKXXXXXXXXXXXXXXX 240 LAGS+SGRS++ V PL PF+ AG+ A+ +GRA+NLL TGED+AK Sbjct: 181 LAGSVSGRSIDQVLPLFPFMAAAGVAALFMGRAVNLLMTGEDVAKGLGQNTVQVKLMLGV 240 Query: 241 XXXXXXXXXXXXXXXXXFIGLFVPHMARGLAGNDYRWVLPFSXXXXXXXXXXXXXXXXXX 300 FIGLFVPH+AR L G DYRW LPFS Sbjct: 241 LIVVLAGGSVAIVGAVGFIGLFVPHLARSLTGRDYRWALPFSAVLGGLLLIIADIAARLL 300 Query: 301 IQPSEVPIGVMTAAIGVPFFIHVARKGGAWR 331 I P+E+PIGVMTAAIG+PFFIHVARKGGAW+ Sbjct: 301 IMPNEIPIGVMTAAIGIPFFIHVARKGGAWK 331 >Q9K6D9.1 Q9K6D9_BACHD Iron (III) dicitrate transport system (Permease) Length = 337 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 131/315 (41%), Positives = 180/315 (57%) Query: 17 CGAFTASLMLGRTVMSWSTLVLAFTDYDAGAVDQLIVRTERLARAVIALAVGASLSVAGT 76 G F AS+ LG+T +S T AF +D + +IVRT RL R VIA +G SL++AG Sbjct: 23 IGFFIASIALGKTAISLQTTYDAFFHFDESMTEHVIVRTSRLTRTVIAAVIGCSLALAGA 82 Query: 77 LMQAMTRNPLASPDVFGISSGAIXXXXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXXXX 136 LMQA+TRNPLA+PD+FGI++GA+ Sbjct: 83 LMQALTRNPLAAPDIFGINAGALFFIVVAVTFFNVNSMVGYMWIAFVGAGVAAMLVYFLG 142 Query: 137 SLGRDGLTPVKLVLAGSAITALFASCTQALLVMNDSGLQDVLFWLAGSISGRSLENVRPL 196 SLG+DGL+PVK+VLAG+AI+ALF S Q LLV+++ +Q VLFWLAGS++GR+++ + P+ Sbjct: 143 SLGKDGLSPVKIVLAGAAISALFISFAQGLLVIDEQKIQTVLFWLAGSVAGRNMDMLLPV 202 Query: 197 LPFIVFAGLIAMSLGRALNLLTTGEDIAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 256 LPFI A ++ + LG+ +N+L G+D+AK Sbjct: 203 LPFIAGAIVLTLFLGKGINILLLGDDVAKGLGQKTVVIKVLMGIMVVFLAGGSVAVAGSI 262 Query: 257 XFIGLFVPHMARGLAGNDYRWVLPFSXXXXXXXXXXXXXXXXXXIQPSEVPIGVMTAAIG 316 FIGL VPHMARGL G+DYRWV+P+S I P ++PIGVMTA +G Sbjct: 263 GFIGLIVPHMARGLVGSDYRWVIPYSALLGATLMIVADIGARFIIMPQDMPIGVMTAFMG 322 Query: 317 VPFFIHVARKGGAWR 331 VPFFI++AR+G A + Sbjct: 323 VPFFIYIARRGLAKK 337 >A3I5R8.1 A3I5R8_9BACI Iron (III) dicitrate transport system (Permease) Length = 312 Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 131/305 (42%), Positives = 178/305 (58%) Query: 23 SLMLGRTVMSWSTLVLAFTDYDAGAVDQLIVRTERLARAVIALAVGASLSVAGTLMQAMT 82 S+ +G+T + +S++ A YDA + +I+RT R RAVIA VGASL+++G LM+A+T Sbjct: 3 SITIGQTSIPFSSIYDAIFHYDAANKEHVIIRTSRFTRAVIATVVGASLAISGALMRALT 62 Query: 83 RNPLASPDVFGISSGAIXXXXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXXXXSLGRDG 142 RNPLA+PD+ GI++GAI SLGRDG Sbjct: 63 RNPLAAPDILGINAGAIFFIVSAITLFSVNSLMSYMWIAFLGAGAAGAMVFFLGSLGRDG 122 Query: 143 LTPVKLVLAGSAITALFASCTQALLVMNDSGLQDVLFWLAGSISGRSLENVRPLLPFIVF 202 LTP+K+VLAG+AITALF S TQ LLV+++ GLQ VLFWLAGS+SGRS++ + P+LPFI+ Sbjct: 123 LTPIKIVLAGAAITALFVSFTQGLLVIDEQGLQSVLFWLAGSVSGRSIDMLIPVLPFILG 182 Query: 203 AGLIAMSLGRALNLLTTGEDIAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFIGLF 262 ++A+ +GR++N+L +G+DIAK FIGL Sbjct: 183 GTVVAIGMGRSINILQSGDDIAKGLGQRTMLTKLTLGIIIIILAGSSVAVAGSIGFIGLI 242 Query: 263 VPHMARGLAGNDYRWVLPFSXXXXXXXXXXXXXXXXXXIQPSEVPIGVMTAAIGVPFFIH 322 VPH+A L G DYRW++P+S I P E+PIGVMTA IG PFFI+ Sbjct: 243 VPHIAIHLVGMDYRWIIPYSAVLGAILLLLADIAARYVIMPLEMPIGVMTALIGAPFFIY 302 Query: 323 VARKG 327 +ARKG Sbjct: 303 IARKG 307 >Q2SGM1.1 Q2SGM1_HAHCH ABC-type Fe3+-siderophore transport system, permease component Length = 340 Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 132/308 (42%), Positives = 176/308 (57%) Query: 20 FTASLMLGRTVMSWSTLVLAFTDYDAGAVDQLIVRTERLARAVIALAVGASLSVAGTLMQ 79 F+AS+ LG+ M S ++ AF +D G+ + +IV T RL+RA+ AL VG++L+VAG LMQ Sbjct: 29 FSASIALGQISMPLSVVMDAFIAFDPGSTEHIIVTTTRLSRALTALCVGSALAVAGALMQ 88 Query: 80 AMTRNPLASPDVFGISSGAIXXXXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXXXXSLG 139 A+TRNPLASP +FG+++GA+ +LG Sbjct: 89 ALTRNPLASPGIFGVNAGALFAIALSTTLFSVPSLQHYIWIAFAGAAVAGTLVYCLSALG 148 Query: 140 RDGLTPVKLVLAGSAITALFASCTQALLVMNDSGLQDVLFWLAGSISGRSLENVRPLLPF 199 RDGLTPV+ VLAG+AITALF S TQ LLV+N GL +LFWLAGS++GRSL+ V P+ PF Sbjct: 149 RDGLTPVRTVLAGAAITALFVSFTQGLLVINQEGLDSILFWLAGSVAGRSLDLVAPVAPF 208 Query: 200 IVFAGLIAMSLGRALNLLTTGEDIAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFI 259 I+FA + +M+LGR +N+L +G+++AK F+ Sbjct: 209 ILFAIVASMALGRHINVLMSGDEVAKGLGQRTVILRLLMGALIIGLAGAAVAIAGNIVFV 268 Query: 260 GLFVPHMARGLAGNDYRWVLPFSXXXXXXXXXXXXXXXXXXIQPSEVPIGVMTAAIGVPF 319 GL VPHM R G DYRWVLP I P EVPIGVMTA +G PF Sbjct: 269 GLIVPHMVRAWLGADYRWVLPGCAVLGAVLLLSADVAARFLIPPQEVPIGVMTALLGTPF 328 Query: 320 FIHVARKG 327 FI++AR+G Sbjct: 329 FIYLARRG 336 >B4AG43.1 B4AG43_BACPU Ferrichrome transport system permease protein FhuB Length = 338 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 121/308 (39%), Positives = 173/308 (56%) Query: 20 FTASLMLGRTVMSWSTLVLAFTDYDAGAVDQLIVRTERLARAVIALAVGASLSVAGTLMQ 79 F S+ LG+T +S + AF +D + +IV T RL+RA+IA VG+SL+++G LMQ Sbjct: 26 FILSISLGQTSISLKATIHAFLHFDESDPNSVIVMTSRLSRALIATVVGSSLAISGALMQ 85 Query: 80 AMTRNPLASPDVFGISSGAIXXXXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXXXXSLG 139 A+TRNPLA+PD+ GI++G + S+G Sbjct: 86 ALTRNPLAAPDLLGINAGGLFFIVISIVFFSTESLTGYMWTAFLGAAIAGMLVFLLGSIG 145 Query: 140 RDGLTPVKLVLAGSAITALFASCTQALLVMNDSGLQDVLFWLAGSISGRSLENVRPLLPF 199 RDGLTPVK+VLAG+AI+ALFAS TQ LL++N+ +Q +LFW+AGS+SGRS++ + P+LP+ Sbjct: 146 RDGLTPVKIVLAGAAISALFASFTQGLLIVNEQSIQSILFWMAGSVSGRSIDMLLPVLPY 205 Query: 200 IVFAGLIAMSLGRALNLLTTGEDIAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFI 259 I+ A ++A+ LGR++N+L +G+DIAK F+ Sbjct: 206 ILGATVVALLLGRSINVLLSGDDIAKGLGQRTLALKITMGVLVVFLAGGSVAVAGSIGFV 265 Query: 260 GLFVPHMARGLAGNDYRWVLPFSXXXXXXXXXXXXXXXXXXIQPSEVPIGVMTAAIGVPF 319 G VPH+ + L G D+RWVLP+ I P EVPIGVMTA G P Sbjct: 266 GFLVPHIVKKLVGPDHRWVLPYCAVVGASLLLVADLAARFLIMPQEVPIGVMTAVAGAPL 325 Query: 320 FIHVARKG 327 F+++ RKG Sbjct: 326 FVYLVRKG 333 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.137 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,256,052,798 Number of extensions: 34725387 Number of successful extensions: 132842 Number of sequences better than 1.0e-05: 3834 Number of HSP's gapped: 124949 Number of HSP's successfully gapped: 4943 Length of query: 331 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 195 Effective length of database: 1,779,438,163 Effective search space: 346990441785 Effective search space used: 346990441785 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)