BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0449.0005.p
         (127 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K5G8.1 B3K5G8_9BACI Transport system permease protein               134   3e-30
Q9K6E0.1 Q9K6E0_BACHD Iron (III) dicitrate transport system (Per...   106   7e-22
B3K922.1 B3K922_9BACI Transport system permease protein               103   4e-21
A3I5R7.1 A3I5R7_9BACI Iron (III) dicitrate transport system (Per...   100   3e-20
B1HRI5.1 B1HRI5_LYSSC Achromobactin transport system permease pr...   100   3e-20

>B3K5G8.1 B3K5G8_9BACI Transport system permease protein
          Length = 347

 Score =  134 bits (336), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 85/112 (75%)

Query: 3   MIRLVNPRTKKSGVYFQMERTTVWALAIGFALYVTAVAAGTGWGNGYISPPDVLRTIFGS 62
           M R  + R++   +  Q E  ++  + +G   +V A+A GTGWG+ YISP  VL T+FG+
Sbjct: 1   MKRYTHIRSRTGSMDLQFETISLIWILLGLLAFVVAIAMGTGWGDTYISPNAVLSTLFGT 60

Query: 63  SQGEYDFIIMTLRLPRVLTALLVGSALGVSGAILQGVIRNPLASPDIIGITG 114
             GE+DFI++TLRLPRVLTAL VG+ALGV+GAILQG+IRNPLASPDIIGITG
Sbjct: 61  GSGEHDFILLTLRLPRVLTALFVGAALGVAGAILQGIIRNPLASPDIIGITG 112


>Q9K6E0.1 Q9K6E0_BACHD Iron (III) dicitrate transport system (Permease)
          Length = 346

 Score =  106 bits (264), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 74/111 (66%)

Query: 3   MIRLVNPRTKKSGVYFQMERTTVWALAIGFALYVTAVAAGTGWGNGYISPPDVLRTIFGS 62
           M +L+  RTK   + FQ+ER TV    +   + +         G+ +I P DV++ +FG 
Sbjct: 1   MSKLLTVRTKSGSISFQVERRTVVVFGLLLLVSLLLFIGSLSVGSTFIPPHDVIKQLFGY 60

Query: 63  SQGEYDFIIMTLRLPRVLTALLVGSALGVSGAILQGVIRNPLASPDIIGIT 113
             GEYDF I TLRLPRVL A +VG+ALGV+G ILQG++RNPLA+PDIIGIT
Sbjct: 61  GTGEYDFTINTLRLPRVLLAFMVGAALGVAGLILQGIVRNPLAAPDIIGIT 111


>B3K922.1 B3K922_9BACI Transport system permease protein
          Length = 348

 Score =  103 bits (258), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 72/104 (69%)

Query: 10  RTKKSGVYFQMERTTVWALAIGFALYVTAVAAGTGWGNGYISPPDVLRTIFGSSQGEYDF 69
           R++ + V F +ER T+W   I   L +  +   TG G+ ++SP  V++ +FG +      
Sbjct: 8   RSRNAKVSFMLERRTLWVCLILSVLCIATMIISTGTGSQFVSPLHVVKALFGDAPPMEQV 67

Query: 70  IIMTLRLPRVLTALLVGSALGVSGAILQGVIRNPLASPDIIGIT 113
           I+M LRLPR++ A+L+G+AL V+GAILQGVIRNPLASPD+IGIT
Sbjct: 68  IVMQLRLPRIIIAVLIGAALAVAGAILQGVIRNPLASPDVIGIT 111


>A3I5R7.1 A3I5R7_9BACI Iron (III) dicitrate transport system (Permease)
          Length = 346

 Score =  100 bits (250), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 70/104 (67%)

Query: 10  RTKKSGVYFQMERTTVWALAIGFALYVTAVAAGTGWGNGYISPPDVLRTIFGSSQGEYDF 69
           R K   + FQ+ + T W + +   L V     G   G+ +I P  V++ + G   GEYDF
Sbjct: 8   RMKSDRISFQIAKRTCWIILLLSLLLVIITIIGLSAGSDFIHPFIVVKELLGYGNGEYDF 67

Query: 70  IIMTLRLPRVLTALLVGSALGVSGAILQGVIRNPLASPDIIGIT 113
           ++ TLRLPR+L ALLVG+ALGV+G ILQG+IRNPLA+PDIIG+T
Sbjct: 68  VLHTLRLPRILMALLVGAALGVAGLILQGIIRNPLAAPDIIGVT 111


>B1HRI5.1 B1HRI5_LYSSC Achromobactin transport system permease protein
          Length = 346

 Score =  100 bits (250), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 70/104 (67%)

Query: 10  RTKKSGVYFQMERTTVWALAIGFALYVTAVAAGTGWGNGYISPPDVLRTIFGSSQGEYDF 69
           RTK   + FQ+ + T W + +   L V     G   G+ +I P  V++ + G   GEYDF
Sbjct: 8   RTKSDRISFQIAKKTCWIILLLSLLLVIITIIGLSAGSDFIHPVTVVKELLGYGNGEYDF 67

Query: 70  IIMTLRLPRVLTALLVGSALGVSGAILQGVIRNPLASPDIIGIT 113
           ++ TLRLPR+L ALLVG+ALGV+G ILQG+I NPLA+PDIIG+T
Sbjct: 68  VLHTLRLPRILMALLVGAALGVAGLILQGIIGNPLAAPDIIGVT 111


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.142    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 768,176,220
Number of extensions: 30221503
Number of successful extensions: 101802
Number of sequences better than 1.0e-05: 3175
Number of HSP's gapped: 101771
Number of HSP's successfully gapped: 3202
Length of query: 127
Length of database: 3,060,696,203
Length adjustment: 92
Effective length of query: 35
Effective length of database: 2,193,962,823
Effective search space: 76788698805
Effective search space used: 76788698805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)